Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq30480 107 2e-18 seq728 105 6e-18 >seq30480 Length=20585 Score = 107 bits (118), Expect = 2e-18 Identities = 181/257 (70%), Gaps = 9/257 (4%) Strand=Plus/Minus Query 38384 TAAAACAAC-TAGACAT--TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATG 38440 ||||| ||| ||||| | ||||||| |||||| || || ||||||| ||| ||||||| Sbjct 14668 TAAAAGAACGTAGACCTACTTGAGGCCTTGGAGTGCCAGCATTAAATAGTGTTGGAGATG 14609 Query 38441 CATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCAC 38500 |||| ||||||| || |||| ||| |||||| | || ||| || ||||| Sbjct 14608 CATGAGTGAACCAGCGTTGAGACATCAAATGATATGTCTTGATGACAGATTCAATATCCT 14549 Query 38501 CGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT-- 38558 | ||| || || | |||||| ||||| |||||||||||||| ||||| | || || Sbjct 14548 CTTTGTGGATTCCAACAGATACTCTCATCAGCATATGTTGTGGCCTTTCCACAATCTTTC 14489 Query 38559 -ATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATG 38617 | | || ||||| || || || |||| | ||||| | ||||| ||| ||| Sbjct 14488 CCTGAATC--TTTAA-AAGGTAAGACCTTTCAAGGGTTTTGAAACCAAAGTAATCATAGT 14432 Query 38618 AATAATCTCTATCGTAT 38634 | | ||||| |||||| Sbjct 14431 CAAAGTCTCTGTCGTAT 14415 >seq728 Length=46982 Score = 105 bits (116), Expect = 6e-18 Identities = 373/580 (64%), Gaps = 2/580 (0%) Strand=Plus/Plus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 ||||||||||||||||| || |||||||||||||| |||| ||||| || || ||| Sbjct 2246 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 2305 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 ||||| ||||| || || |||||||| | ||||||||| | | || || ||| Sbjct 2306 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAG 2365 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT 11806 || || || || ||| ||||| || || | | || | | | | | | Sbjct 2366 AAAATCCCTTCAACACAGGCAAAAGCCACCAAACGCTCCGCGAAGGTTTCGGACCCATCG 2425 Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTA 11866 ||||| |||||| | || ||||||| || || ||||| || || || Sbjct 2426 ATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATCGCACGG 2485 Query 11867 AATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATT 11926 || || | | ||||| | ||| | | || | || | | ||||| ||||| Sbjct 2486 AACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACATC 2545 Query 11927 TCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC 11986 || ||||| ||||| || || || ||||| || ||||||||| || |||| | | | Sbjct 2546 TCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAACCTCGGCAACC 2605 Query 11987 TGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGC 12045 || || || ||| || ||| | || | ||||| || || || || | || Sbjct 2606 TGGACGTCTTTCAT-GAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCAGC 2664 Query 12046 AAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATC 12105 |||||| || || | ||| | || || | |||| | |||| || ||||| | Sbjct 2665 AAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAGTG 2724 Query 12106 ATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTT 12165 | ||| | || | ||| |||||||| || ||||| ||| ||||| | || || Sbjct 2725 ACGAGTATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTT 2784 Query 12166 ATACATTTTCCAGATATCATGATACTTAATAGGGAAAATA 12205 ||||||| ||| || | |||||| ||| ||||| ||| Sbjct 2785 GTACATTTCCCAAATCTGTGGATACTGAATTGGGAACATA 2824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468273026485600