Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq30480 107 2e-18
seq728 105 6e-18
>seq30480
Length=20585
Score = 107 bits (118), Expect = 2e-18
Identities = 181/257 (70%), Gaps = 9/257 (4%)
Strand=Plus/Minus
Query 38384 TAAAACAAC-TAGACAT--TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATG 38440
||||| ||| ||||| | ||||||| |||||| || || ||||||| ||| |||||||
Sbjct 14668 TAAAAGAACGTAGACCTACTTGAGGCCTTGGAGTGCCAGCATTAAATAGTGTTGGAGATG 14609
Query 38441 CATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCAC 38500
|||| ||||||| || |||| ||| |||||| | || ||| || |||||
Sbjct 14608 CATGAGTGAACCAGCGTTGAGACATCAAATGATATGTCTTGATGACAGATTCAATATCCT 14549
Query 38501 CGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT-- 38558
| ||| || || | |||||| ||||| |||||||||||||| ||||| | || ||
Sbjct 14548 CTTTGTGGATTCCAACAGATACTCTCATCAGCATATGTTGTGGCCTTTCCACAATCTTTC 14489
Query 38559 -ATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATG 38617
| | || ||||| || || || |||| | ||||| | ||||| ||| |||
Sbjct 14488 CCTGAATC--TTTAA-AAGGTAAGACCTTTCAAGGGTTTTGAAACCAAAGTAATCATAGT 14432
Query 38618 AATAATCTCTATCGTAT 38634
| | ||||| ||||||
Sbjct 14431 CAAAGTCTCTGTCGTAT 14415
>seq728
Length=46982
Score = 105 bits (116), Expect = 6e-18
Identities = 373/580 (64%), Gaps = 2/580 (0%)
Strand=Plus/Plus
Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686
||||||||||||||||| || |||||||||||||| |||| ||||| || || |||
Sbjct 2246 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 2305
Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746
||||| ||||| || || |||||||| | ||||||||| | | || || |||
Sbjct 2306 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAG 2365
Query 11747 AATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT 11806
|| || || || ||| ||||| || || | | || | | | | | |
Sbjct 2366 AAAATCCCTTCAACACAGGCAAAAGCCACCAAACGCTCCGCGAAGGTTTCGGACCCATCG 2425
Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTA 11866
||||| |||||| | || ||||||| || || ||||| || || ||
Sbjct 2426 ATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATCGCACGG 2485
Query 11867 AATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATT 11926
|| || | | ||||| | ||| | | || | || | | ||||| |||||
Sbjct 2486 AACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACATC 2545
Query 11927 TCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC 11986
|| ||||| ||||| || || || ||||| || ||||||||| || |||| | | |
Sbjct 2546 TCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAACCTCGGCAACC 2605
Query 11987 TGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGC 12045
|| || || ||| || ||| | || | ||||| || || || || | ||
Sbjct 2606 TGGACGTCTTTCAT-GAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCAGC 2664
Query 12046 AAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATC 12105
|||||| || || | ||| | || || | |||| | |||| || ||||| |
Sbjct 2665 AAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAGTG 2724
Query 12106 ATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTT 12165
| ||| | || | ||| |||||||| || ||||| ||| ||||| | || ||
Sbjct 2725 ACGAGTATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTT 2784
Query 12166 ATACATTTTCCAGATATCATGATACTTAATAGGGAAAATA 12205
||||||| ||| || | |||||| ||| ||||| |||
Sbjct 2785 GTACATTTCCCAAATCTGTGGATACTGAATTGGGAACATA 2824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468273026485600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |