Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq545 116 4e-21 seq796 107 2e-18 seq572 86.0 6e-12 >seq545 Length=31085 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | || | ||||| |||||||||||||| ||||| ||||| Sbjct 2411 CCACCACGTAGACGGAGGACAAGGTGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGCA 2352 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| |||||||| |||||| ||||||| | ||||| || || || Sbjct 2351 AGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 2292 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| |||| | ||| | | || | ||||| | | ||| || Sbjct 2291 ATACCTTCCTTGTC-TTGAATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCGAC 2233 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || | ||||| ||||||| ||||| || || |||||||| Sbjct 2232 CTCAAGAGTTATAGTCTTCCCGGTCAGAGTTTTAACAAAGATTTGCAT 2185 Score = 109 bits (120), Expect = 5e-19 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | || | |||| |||||||||||||| ||||| ||||| Sbjct 2183 CCACCACGTAGACGGAGGACAAGRTGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGCA 2124 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| |||||||| |||||| ||||||| | |||||||| ||||| Sbjct 2123 AGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAGGA 2064 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| | || | ||| | | || | ||||| | ||| || Sbjct 2063 ATGCCTTCCTTGTC-TTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCGAC 2005 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || | ||||| ||||| | || || || ||||| ||||| Sbjct 2004 CTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 1957 >seq796 Length=44438 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||||| || ||||||| || ||||| || || ||||| |||||| Sbjct 19743 CCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGCT 19684 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||||| | ||| || || ||| |||||| | ||||| || || || Sbjct 19683 AATGTCCTTCCATCTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 19624 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||| | ||| | | || | ||||| | ||||| Sbjct 19623 ATACCTTCTTTGTC-CTGAATTTTGGCCTTAACATTGTCAATGGTGTCAGAACTTTCCAC 19565 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | |||||||| ||||| || || || || |||||||| Sbjct 19564 CTCAAGGGTGATTGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 19517 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || ||||||||||||||||| |||||| Sbjct 18831 CCACCACGAAGACGGAGCACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCGGCG 18772 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| ||||| || || ||| ||||||| | ||||| || || || Sbjct 18771 AGGGTACGGCCATCTTCAAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 18712 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| || ||| | | || | ||||| | | |||||| Sbjct 18711 ATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTGTCAATGGTGTCTGAGCTTTCCACC 18652 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | ||||| || || | ||||| || ||||| ||||| Sbjct 18651 TCAAGGGTGATGGTCTTTCCAGTGAGGGTTTTGACAAATATCTGCAT 18605 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || ||||| || || ||||||||||| Sbjct 19515 CCACCGCGAAGACGAAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTATAATCAGCA 19456 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| || ||||| || || ||| |||||| | ||||| || || || Sbjct 19455 AGGGTCCGGCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGA 19396 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| || ||| | | || | ||||||| | || ||| Sbjct 19395 ATGCCTTCCTTGTCCTGGATCTTGGCTTTAACATTGTCAATAGTGTCGGAGCTTTCAACC 19336 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | ||||| |||||||| || || || || |||||||| Sbjct 19335 TCAAGGGTGATGGTCTTTCCGGTCAAGGTCTTCACAAAAATTTGCAT 19289 >seq572 Length=122185 Score = 86.0 bits (94), Expect = 6e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 || ||| | ||||| || || ||||| |||||||| ||||| | || ||| || Sbjct 87960 CAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGCGAGGGTTCTCCCATC 88019 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| | |||||| |||||| | ||||| | |||||||| ||||||||||||||||| || Sbjct 88020 TTCCAACTGTTTTCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGTATGCCTTCTTTATC 88079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495797427608000