Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq728 174 2e-38
seq23166 86.0 8e-12
>seq728
Length=46982
Score = 174 bits (192), Expect = 2e-38
Identities = 588/909 (65%), Gaps = 20/909 (2%)
Strand=Plus/Plus
Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818
||||||||| ||| || || || || || | || || || ||||||||||| |||
Sbjct 1943 GACATAACTGAGGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 2002
Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 41878
| || || ||||| ||||||| ||||| | |||| || || || | | |
Sbjct 2003 TGTAAACTAATCAGCTCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAA 2062
Query 41879 CCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAA 41938
||||| || | |||||| || || | || ||||| ||| | |||||| || | |
Sbjct 2063 CCCAAAGCATCCAACAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCTCCA 2122
Query 41939 TTCATTCCTATAAGTTTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATAGAGA 41996
|||||||| | || | |||||||| |||| | ||| | | | ||| || |
Sbjct 2123 TTCATTCCCACCAGAGCACAAGGAAGAGCATCACAC-ACGAACTCCCT-TTCTATCTCCA 2180
Query 41997 CCGCGTCTGTTATAATAGATCTTACTGTTTCTTCA-----CTCGGTGGATACAATAAATG 42051
| || |||| | ||| || ||| || ||| || || || | || ||
Sbjct 2181 CAGCATCTGCAACAATTCCCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAGCA-AACTG 2239
Query 42052 TTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTT 42111
| | | |||||| || ||||| ||||||| ||| || ||||| |||||| || ||
Sbjct 2240 T----AAAGCAAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATT 2295
Query 42112 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGA 42171
|| || || | ||| ||||||| || || ||||| | ||||||||| || ||
Sbjct 2296 TGAGAAGGTTAATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCT 2355
Query 42172 TCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---C 42228
||| ||||| || ||||| || ||||| || | | | ||| | | |
Sbjct 2356 TCCGCTGAAGAAAATCCCTTCAACACAGGCAAAAGCCACCAAACGCTCCGCGAAGGTTTC 2415
Query 42229 GGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 42288
|| | ||| ||||| | ||||| | |||||||||| |||||||| || ||
Sbjct 2416 GGACC---CATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGT 2472
Query 42289 TTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAA 42348
|| || ||| || | | | | ||||| | | ||| || | || | || | ||
Sbjct 2473 CTCAATCGCACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAG 2532
Query 42349 AAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 42408
| ||| ||||| || ||||| || || |||||||| || || || || |||||| |
Sbjct 2533 CAAACTGTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACG 2592
Query 42409 GGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCC 42468
|||||| |||||| || ||| | || | | |||| | || || || || ||
Sbjct 2593 AACCTCGGCAACCTGGACGTCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCC 2652
Query 42469 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA 42528
||| ||| |||||||| || | ||||| | || |||| |||| | | |||||
Sbjct 2653 GTCTGAGGCAGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAG 2712
Query 42529 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGC 42588
|| | ||| | | |||| | || | ||| ||||||||||||||||| || |||||
Sbjct 2713 GTTTTCCCAGTGACGAGTATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGATGC 2772
Query 42589 TTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCT 42648
|| || || ||||| | ||| || | |||| ||||||||||| ||| ||||
Sbjct 2773 CATGGCTTTCTTGTACATTTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCG 2832
Query 42649 ATTTGGATT 42657
|| ||| ||
Sbjct 2833 ATCTGGGTT 2841
>seq23166
Length=18651
Score = 86.0 bits (94), Expect = 8e-12
Identities = 152/222 (68%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237
||||| || || | |||| ||| |||| |||| | || | | ||| |||||||| |||
Sbjct 8359 CCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATCGGAATAATTCCA 8418
Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297
|| |||| ||||| || || ||||| || ||| || ||||||||||| | |||
Sbjct 8419 TTTGATGTCCCATTTGTTCCACGAATATAACTCCCAGTGCCACGAATATTGTGCACAGAT 8478
Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357
| || ||||| || || ||| || | || || || | || ||||| |||
Sbjct 8479 ACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACACTCCTTAAGAGTGTCATATATG 8538
Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399
||||| |||||||| || ||||| | || || ||||||
Sbjct 8539 CCCTCAATACTATCGTCTTTCATGCATATCAGGAAGCAGCTA 8580
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670778546572400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |