Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq545 122 6e-23 seq796 107 1e-18 seq558 95.1 9e-15 seq3956 91.5 1e-13 seq30006 82.4 6e-11 >seq545 Length=31085 Score = 122 bits (134), Expect = 6e-23 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||| | || || | ||| || || || || || || |||||||| || Sbjct 3323 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 3264 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | ||| | || || | |||||| ||||| | |||||||| |||||||| ||| Sbjct 3263 AGAGTCCTCCCRTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 3204 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || || || ||||| ||| |||||| || ||| | || |||||||| | | || || Sbjct 3203 ATACCCTCCTTGTCTTGAATCTTTGCT-TTCACATTGTCAATGGTATCTGAACTCTCAAC 3145 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || || || |||| ||| || |||||||||||||| Sbjct 3144 CTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 3097 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| || |||||||| ||||||||||| || ||| | ||||| | ||| Sbjct 2387 TGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 2328 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT- 15279 || ||||| | |||| | || ||||| ||||| ||||| ||||| |||||| Sbjct 2327 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 2268 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | || ||||| || | || || || | || || || || || || Sbjct 2267 GCT-TTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTCCCGGT 2209 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||||||| ||||| |||||||| Sbjct 2208 CAGAGTTTTAACAAAGATTTGCAT 2185 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || ||||| ||||||||||| || ||| | ||||| | ||| Sbjct 2615 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 2556 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT- 15279 || ||||| | |||| | || ||||| ||||| ||||| ||||| |||||| Sbjct 2555 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 2496 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | || ||||| || | || || || | || || || || || || Sbjct 2495 GCT-TTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTCCCGGT 2437 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||||||| ||||| |||||||| Sbjct 2436 CAGAGTTTTAACAAAGATTTGCAT 2413 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||| | | | ||| | || ||||| || ||||| || ||||||||||| Sbjct 3097 TGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCTG 3038 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | | || | || || | ||| || ||||| | ||||| | || ||||| | Sbjct 3037 CCAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGAG 2978 Query 15255 GAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||| || || ||||| || |||||| || ||| | || |||||||| | | || Sbjct 2977 GAATACCCTCCTTGTCTTGGATCTTTGCT-TTAACATTGTCGATGGTATCTGAACTCTCA 2919 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || || ||||||| || || ||||| |||||||| Sbjct 2918 ACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCAT 2869 >seq796 Length=44438 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || || || || |||||||||||| || | || | ||||| Sbjct 19725 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGCTAATGTCCTTCCATCTTCC 19666 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || || || || | ||||| | || ||||| |||||| ||||||||||| | Sbjct 19665 AACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCTTCTTTGTCCTGA 19606 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| ||| ||| | || ||||| || | |||| || || | ||| || || || Sbjct 19605 ATTTTGGCCTTAACATTGTCAATGGTGTCAGAACTTTCCACCTCAAGGGTGATTGTCTTG 19546 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| || || ||||| |||||||| Sbjct 19545 CCAGTCAAGGTCTTCACAAAGATTTGCAT 19517 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || || || || ||||||||||| || | || |||| || Sbjct 19041 ACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCA 18982 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || || | ||||| | || ||||| ||||| ||||| ||||| Sbjct 18981 AGCTGCTTTCCCGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 18922 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || ||||| || |||| || || | ||| ||||| || Sbjct 18921 ATCTTAGCCTTAACATTGTCAATGGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTTT 18862 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||| |||||| || ||||||||||| Sbjct 18861 CCTGTCAAAGTTTTCACGAAAATTTGCAT 18833 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/209 (68%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| || || || || || ||||||||||| || | || |||| || Sbjct 19269 ACCAAGTGAAGRGTTGATTCCTTYTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCA 19210 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || || | ||||| | || ||||| ||||| ||||| ||||| Sbjct 19209 AGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 19150 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| || ||| | || || || ||| |||| || || | ||| ||||| || Sbjct 19149 ATCTTGGCTTTAACATTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTT 19090 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| ||| || |||||||||||||| Sbjct 19089 CCGGTCAAAGTCTTCACAAAAATTTGCAT 19061 >seq558 Length=67963 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || || || |||||||| || ||| ||| | || || | || Sbjct 17116 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGC 17175 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | ||||| || || ||||| |||||| ||||| ||||| ||| || Sbjct 17176 TTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTA 17235 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| || ||||| ||||||||||| || || || ||| Sbjct 17236 GCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTC 17295 Query 15341 AGAGTTTTTACAAAAATTTGCATATTT 15367 || || || ||||| || ||||| ||| Sbjct 17296 AGGGTCTTCACAAAGATCTGCATTTTT 17322 >seq3956 Length=148667 Score = 91.5 bits (100), Expect = 1e-13 Identities = 169/244 (69%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208 || || || | ||||| || || || ||||| || |||||||| || | | Sbjct 117768 CTCAAGACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAGCAAGTGTATGATCA 117827 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 || | |||||||| ||| | |||| || | |||||| || ||||||||||||||| Sbjct 117828 TCCTTAAATTGTTTTCCACCATATACTAATCTTTGTTGATCTGAGGGAATTCCTTCTTTG 117887 Query 15269 TC-ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || ||| |||||| || ||| | || |||| | | || | | ||||| | ||||| Sbjct 117888 TCTTCAATCTTTGCT-TTAACATTGTCAATGGAGTTGGTACTCTTCACATCCAGAGTAAT 117946 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAAATTTTAATACT 15387 ||| || || | |||||||| ||||| |||||||| | | || | ||| | || | | | Sbjct 117947 GGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCATCTGT-AAGAGAAAGTATTGAAAGT 118005 Query 15388 TATA 15391 |||| Sbjct 118006 TATA 118009 >seq30006 Length=21699 Score = 82.4 bits (90), Expect = 6e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15233 |||| || ||||||||||| |||| | | | ||||| | || || || ||| | | Sbjct 12893 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 12834 Query 15234 TCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATT 15292 |||| || || ||||| |||||| ||||| ||||| ||| || ||| || ||| | Sbjct 12833 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCT-TTGACATTG 12775 Query 15293 TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15352 || || || ||||| ||| || || | || || || || || || |||||||| || Sbjct 12774 TCAATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 12715 Query 15353 AAAATTTGCATATT 15366 || || ||||| || Sbjct 12714 AAGATCTGCATTTT 12701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361989439603590