Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq545 122 6e-23
seq796 107 1e-18
seq558 95.1 9e-15
seq3956 91.5 1e-13
seq30006 82.4 6e-11
>seq545
Length=31085
Score = 122 bits (134), Expect = 6e-23
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|| |||||||| | || || | ||| || || || || || || |||||||| ||
Sbjct 3323 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 3264
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| | ||| | || || | |||||| ||||| | |||||||| |||||||| |||
Sbjct 3263 AGAGTCCTCCCRTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 3204
Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
|| || || ||||| ||| |||||| || ||| | || |||||||| | | || ||
Sbjct 3203 ATACCCTCCTTGTCTTGAATCTTTGCT-TTCACATTGTCAATGGTATCTGAACTCTCAAC 3145
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || ||||| || || || |||| ||| || ||||||||||||||
Sbjct 3144 CTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 3097
Score = 95.1 bits (104), Expect = 9e-15
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
|||||||| || |||||||| ||||||||||| || ||| | ||||| | |||
Sbjct 2387 TGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 2328
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT- 15279
|| ||||| | |||| | || ||||| ||||| ||||| ||||| ||||||
Sbjct 2327 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 2268
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
||| || ||| | || ||||| || | || || || | || || || || || ||
Sbjct 2267 GCT-TTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTCCCGGT 2209
Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363
||||||||| ||||| ||||||||
Sbjct 2208 CAGAGTTTTAACAAAGATTTGCAT 2185
Score = 95.1 bits (104), Expect = 9e-15
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
||||||||||| || ||||| ||||||||||| || ||| | ||||| | |||
Sbjct 2615 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 2556
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT- 15279
|| ||||| | |||| | || ||||| ||||| ||||| ||||| ||||||
Sbjct 2555 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 2496
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
||| || ||| | || ||||| || | || || || | || || || || || ||
Sbjct 2495 GCT-TTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTCCCGGT 2437
Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363
||||||||| ||||| ||||||||
Sbjct 2436 CAGAGTTTTAACAAAGATTTGCAT 2413
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
|||||||||| | | | ||| | || ||||| || ||||| || |||||||||||
Sbjct 3097 TGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCTG 3038
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
| | || | || || | ||| || ||||| | ||||| | || ||||| |
Sbjct 3037 CCAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGAG 2978
Query 15255 GAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313
|||| || || ||||| || |||||| || ||| | || |||||||| | | ||
Sbjct 2977 GAATACCCTCCTTGTCTTGGATCTTTGCT-TTAACATTGTCGATGGTATCTGAACTCTCA 2919
Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || ||||| || || ||||||| || || ||||| ||||||||
Sbjct 2918 ACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCAT 2869
>seq796
Length=44438
Score = 107 bits (118), Expect = 1e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || |||||||| || || || || |||||||||||| || | || | |||||
Sbjct 19725 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGCTAATGTCCTTCCATCTTCC 19666
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|| || || || || | ||||| | || ||||| |||||| ||||||||||| |
Sbjct 19665 AACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCTTCTTTGTCCTGA 19606
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|||||| ||| ||| | || ||||| || | |||| || || | ||| || || ||
Sbjct 19605 ATTTTGGCCTTAACATTGTCAATGGTGTCAGAACTTTCCACCTCAAGGGTGATTGTCTTG 19546
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| |||| || || ||||| ||||||||
Sbjct 19545 CCAGTCAAGGTCTTCACAAAGATTTGCAT 19517
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || |||||||| || || || || ||||||||||| || | || |||| ||
Sbjct 19041 ACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCA 18982
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| || || || || | ||||| | || ||||| ||||| ||||| |||||
Sbjct 18981 AGCTGCTTTCCCGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 18922
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| || ||| ||| | || ||||| || |||| || || | ||| ||||| ||
Sbjct 18921 ATCTTAGCCTTAACATTGTCAATGGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTTT 18862
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
||||||| |||||| || |||||||||||
Sbjct 18861 CCTGTCAAAGTTTTCACGAAAATTTGCAT 18833
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/209 (68%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || ||||| || || || || || ||||||||||| || | || |||| ||
Sbjct 19269 ACCAAGTGAAGRGTTGATTCCTTYTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCA 19210
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| || || || || | ||||| | || ||||| ||||| ||||| |||||
Sbjct 19209 AGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 19150
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| ||| || ||| | || || || ||| |||| || || | ||| ||||| ||
Sbjct 19149 ATCTTGGCTTTAACATTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTT 19090
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| |||| ||| || ||||||||||||||
Sbjct 19089 CCGGTCAAAGTCTTCACAAAAATTTGCAT 19061
>seq558
Length=67963
Score = 95.1 bits (104), Expect = 9e-15
Identities = 145/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
|| |||||||| || || || |||||||| || ||| ||| | || || | ||
Sbjct 17116 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGC 17175
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| || ||| | ||||| || || ||||| |||||| ||||| ||||| ||| ||
Sbjct 17176 TTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTA 17235
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
||| ||| | || ||||| || ||||| ||||||||||| || || || |||
Sbjct 17236 GCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTC 17295
Query 15341 AGAGTTTTTACAAAAATTTGCATATTT 15367
|| || || ||||| || ||||| |||
Sbjct 17296 AGGGTCTTCACAAAGATCTGCATTTTT 17322
>seq3956
Length=148667
Score = 91.5 bits (100), Expect = 1e-13
Identities = 169/244 (69%), Gaps = 3/244 (1%)
Strand=Plus/Plus
Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208
|| || || | ||||| || || || ||||| || |||||||| || | |
Sbjct 117768 CTCAAGACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAGCAAGTGTATGATCA 117827
Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268
|| | |||||||| ||| | |||| || | |||||| || |||||||||||||||
Sbjct 117828 TCCTTAAATTGTTTTCCACCATATACTAATCTTTGTTGATCTGAGGGAATTCCTTCTTTG 117887
Query 15269 TC-ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327
|| ||| |||||| || ||| | || |||| | | || | | ||||| | |||||
Sbjct 117888 TCTTCAATCTTTGCT-TTAACATTGTCAATGGAGTTGGTACTCTTCACATCCAGAGTAAT 117946
Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAAATTTTAATACT 15387
||| || || | |||||||| ||||| |||||||| | | || | ||| | || | | |
Sbjct 117947 GGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCATCTGT-AAGAGAAAGTATTGAAAGT 118005
Query 15388 TATA 15391
||||
Sbjct 118006 TATA 118009
>seq30006
Length=21699
Score = 82.4 bits (90), Expect = 6e-11
Identities = 136/194 (70%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15233
|||| || ||||||||||| |||| | | | ||||| | || || || ||| | |
Sbjct 12893 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 12834
Query 15234 TCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATT 15292
|||| || || ||||| |||||| ||||| ||||| ||| || ||| || ||| |
Sbjct 12833 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCT-TTGACATTG 12775
Query 15293 TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15352
|| || || ||||| ||| || || | || || || || || || |||||||| ||
Sbjct 12774 TCAATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 12715
Query 15353 AAAATTTGCATATT 15366
|| || ||||| ||
Sbjct 12714 AAGATCTGCATTTT 12701
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361989439603590
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |