Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq796 93.3 3e-14
seq3886 89.7 4e-13
seq545 82.4 6e-11
>seq796
Length=44438
Score = 93.3 bits (102), Expect = 3e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897
|||||| |||||||||||||| || ||||| ||||||| || | | || || |||||
Sbjct 20176 GTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGCTG 20117
Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957
|| || ||| | || ||||||||||| ||| || | ||||| ||||| ||| ||
Sbjct 20116 CTTCCCTGCAAAGATCAGTCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGAATCTT 20057
Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017
|| || | | | | ||||| | |||| || | || |||||||| || ||
Sbjct 20056 AGCCTTCACATTGTCAATGGTATCAGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGT 19997
Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041
|| || || |||||||| |||||
Sbjct 19996 CAAGGTCTTCACAAAAATCTGCAT 19973
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||| | || || ||||| || || |||||||| || | || || |||||||
Sbjct 19270 CACCAAGTGAAGRGTTGATTCCTTYTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTC 19211
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
||||| || || ||| | || | ||||||||| || ||| | ||| || |||||
Sbjct 19210 AAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTG 19151
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|| || ||| || | | | | ||| ||| || || | ||| ||||| ||
Sbjct 19150 GATCTTGGCTTTAACATTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTT 19091
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|| || ||||| || |||||||||||||||
Sbjct 19090 TCCGGTCAAAGTCTTCACAAAAATTTGCATT 19060
>seq3886
Length=20373
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
||||||| | || ||| | ||||| ||||| || ||||||||||| || ||||| ||||
Sbjct 12997 TTCCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCG 13056
Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932
||| || | | ||||| ||||| || || ||| |||| | |||||||| || ||
Sbjct 13057 CCAAAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGG 13116
Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992
| | ||||| ||||| || || || || | | | | || ||| |||
Sbjct 13117 GAATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAA 13176
Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| | ||| |||||||| || || | || || ||||| ||||||||
Sbjct 13177 CCTCCAGGGTGATGGTTTTCCCGGTAAGGGTCTTAACAAAGATTTGCAT 13225
>seq545
Length=31085
Score = 82.4 bits (90), Expect = 6e-11
Identities = 154/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
||||||| ||| | ||||||| || | || |||||||| || || ||||| || ||
Sbjct 3323 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 3264
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| || | | ||||| || |||||||| ||| | || | | ||| || || |||
Sbjct 3263 AGAGTCCTCCCRTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 3204
Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994
| ||||| ||||| ||| || ||| || | | | | ||||| | |||
Sbjct 3203 ATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACC 3144
Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| | ||||| || || || || ||||| |||||||||||||||||
Sbjct 3143 TCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 3097
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414355588468060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |