Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq3956 93.3 3e-14
seq30006 87.8 1e-12
>seq3956
Length=148667
Score = 93.3 bits (102), Expect = 3e-14
Identities = 152/216 (70%), Gaps = 6/216 (3%)
Strand=Plus/Plus
Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216
||| || | ||| | ||| ||||| ||||| ||||||||||||| ||| | | || ||
Sbjct 117770 CAAGACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAG-CAAGTGTA--TGATC 117826
Query 33217 ATCC---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT 33273
|||| ||||| ||||||| | ||| ||| | ||| || || | ||| || ||||||||
Sbjct 117827 ATCCTTAAATTGTTTTCCACCATATACTAATCTTTGTTGATCTGAGGGAATTCCTTCTTT 117886
Query 33274 TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333
|| |||| ||| || | | ||| | || | | | || |||||||| ||
Sbjct 117887 GTCTTCAATCTTTGCTTTAACATTGTCAATGGAGTTGGTACTCTTCACATCCAGAGTAAT 117946
Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| ||||| | |||||||| || || ||||||||
Sbjct 117947 GGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCAT 117982
>seq30006
Length=21699
Score = 87.8 bits (96), Expect = 1e-12
Identities = 135/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 33180 CTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATA 33239
|||| || || |||||||||| | | | || || || | |||||||| || |
Sbjct 12893 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 12834
Query 33240 TTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTT 33299
| || || |||||||||| || || ||||| || || |||| ||| || | |
Sbjct 12833 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGT 12774
Query 33300 GAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGA 33359
||| |||||| | | || ||| || || || ||||| || |||||||||||||| ||||
Sbjct 12773 CAATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGA 12714
Query 33360 AAATTTGCATGTT 33372
| || ||||| ||
Sbjct 12713 AGATCTGCATTTT 12701
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318610579465020
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |