Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq3956 93.3 3e-14 seq30006 87.8 1e-12 >seq3956 Length=148667 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 ||| || | ||| | ||| ||||| ||||| ||||||||||||| ||| | | || || Sbjct 117770 CAAGACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAG-CAAGTGTA--TGATC 117826 Query 33217 ATCC---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT 33273 |||| ||||| ||||||| | ||| ||| | ||| || || | ||| || |||||||| Sbjct 117827 ATCCTTAAATTGTTTTCCACCATATACTAATCTTTGTTGATCTGAGGGAATTCCTTCTTT 117886 Query 33274 TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 || |||| ||| || | | ||| | || | | | || |||||||| || Sbjct 117887 GTCTTCAATCTTTGCTTTAACATTGTCAATGGAGTTGGTACTCTTCACATCCAGAGTAAT 117946 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| | |||||||| || || |||||||| Sbjct 117947 GGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCAT 117982 >seq30006 Length=21699 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 33180 CTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATA 33239 |||| || || |||||||||| | | | || || || | |||||||| || | Sbjct 12893 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 12834 Query 33240 TTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTT 33299 | || || |||||||||| || || ||||| || || |||| ||| || | | Sbjct 12833 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGT 12774 Query 33300 GAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGA 33359 ||| |||||| | | || ||| || || || ||||| || |||||||||||||| |||| Sbjct 12773 CAATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGA 12714 Query 33360 AAATTTGCATGTT 33372 | || ||||| || Sbjct 12713 AGATCTGCATTTT 12701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318610579465020