Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq545 96.9 2e-15
seq796 91.5 1e-13
>seq545
Length=31085
Score = 96.9 bits (106), Expect = 2e-15
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954
||||||||||| | ||||||| ||| || || ||| || || || || || || |
Sbjct 3323 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTC-TGC 3265
Query 43955 AATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013
|| | | | | || || | |||||| || ||||| ||||| || || ||||| | ||
Sbjct 3264 AAGAGTCCTCCCRTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGG 3205
Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073
| ||| || || ||| ||| ||| ||| || | ||| ||||||| ||| ||
Sbjct 3204 AATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAAC 3145
Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122
|| | |||||||| || || || |||||||| ||||| |||||||||
Sbjct 3144 CTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 3096
Score = 87.8 bits (96), Expect = 1e-12
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954
||||||||||| | ||||||| ||| || || ||| || || || || || || |
Sbjct 3551 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTC-TGC 3493
Query 43955 AATTGACG-CTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013
|| | | | | || || | ||||| || ||||| ||||| || || ||||| | ||
Sbjct 3492 AAGAGTCCTCCCRTCCTCAAGWTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGG 3433
Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073
| ||| || || ||| ||| ||| ||| || | ||| ||||||| ||| ||
Sbjct 3432 AATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAAC 3373
Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| | || ||||| || || || |||||||||||||| || |||||
Sbjct 3372 CTCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 3325
Score = 82.4 bits (90), Expect = 5e-11
Identities = 113/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024
|||| || | ||| ||||| ||||| ||||| | |||||||| |||| | ||| || |
Sbjct 3025 CATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGAGGAATACCCTCCT 2966
Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084
| ||| || ||| ||| || | | | ||||||| ||| || || | ||||
Sbjct 2965 TGTCTTGGATCTTTGCTTTAACATTGTCGATGGTATCTGAACTCTCAACCTCCAAAGTAA 2906
Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122
|||| || || || || ||||| |||||||||||||||
Sbjct 2905 TTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCATG 2868
>seq796
Length=44438
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972
||||| || || || ||| || || || || |||||| |||| | |||| |||
Sbjct 19725 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGCTAATGTCCTTCCATCTTCC 19666
Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC-TGA 44031
|| || ||||| ||||| ||||||| |||||||| | || | ||||||||| || |||
Sbjct 19665 AACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCTTCTTTGTCCTGA 19606
Query 44032 AATTTTTTGTTTGACCATAG-CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090
| |||| | | | ||| | ||| || || | ||||| || | || ||||| |
Sbjct 19605 A--TTTTGGCCTTAACATTGTCAATGGTGTCAGAACTTTCCACCTCAAGGGTGATTGTCT 19548
Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
| || || || ||||||||||| ||||||||
Sbjct 19547 TGCCAGTCAAGGTCTTCACAAAGATTTGCAT 19517
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354591717602520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |