Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq728 107 2e-18 >seq728 Length=46982 Score = 107 bits (118), Expect = 2e-18 Identities = 479/745 (64%), Gaps = 19/745 (3%) Strand=Plus/Plus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 |||||||| || ||| ||||| || | |||||| || ||||| || || || || ||| Sbjct 1943 GACATAACTGAGGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 2002 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTT---A 12961 | ||| ||| ||||| |||| || ||||| | || || | ||| | || | Sbjct 2003 TGTAAACTAATCAGCTCCATCCAATCAAATGGATTCT--GAGCATT-GTACATCTTGTCA 2059 Query 12962 CACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCA 13021 | || || | |||||||||||||| |||||||||||||| | |||| ||||| Sbjct 2060 TAACCCAAAGCATCCAACAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCT 2119 Query 13022 CAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCA 13081 | |||||||| | | ||| | ||| || | || | ||||||| || Sbjct 2120 CCATTCATTCCCACCAGAGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCC 2179 Query 13082 ACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGAT--TTGATAG-ATGC 13138 || || || ||| || | || | | || || || | || | | ||| | | Sbjct 2180 ACAGCATCTGCAACAATTCCCCTGACT-CGCTC-CTCAGTTAGCTTCGTCCTTAGCAAAC 2237 Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTT 13198 | || | || ||| ||||||||||||||||| ||||| ||||| |||| ||| ||| Sbjct 2238 TGTAA-AGCAAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTT 2296 Query 13199 GAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAA 13258 || || |||| || ||||| | ||| |||||||| | ||||||||| | | || | | Sbjct 2297 GAGAAGGTTAATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCG-AACAGAAGCT 2355 Query 13259 CCCG-aaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACT 13317 ||| || || || |||||||| ||||| || | ||| | || | | || Sbjct 2356 TCCGCTGAAGAAAATCCCTTCAACACAGGCAAAAGCCACCAAACGCTCCGCGAAGGT--- 2412 Query 13318 ATTTTTACTC-TCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATAT 13376 || || | || ||||| |||||| || || || | || ||| || || Sbjct 2413 -TTCGGACCCATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTG 2471 Query 13377 TTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCA 13436 | || || || || || | | ||||| | | || || || | || | || Sbjct 2472 TCTCAATCGCACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACA 2531 Query 13437 ATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATC 13496 || || ||||| || ||||| ||||| || || || |||||||| ||||| ||| | Sbjct 2532 GCAAACTGTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCAC 2591 Query 13497 TAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCC 13556 | |||| | ||||| || || || ||| | || | ||| || ||| || | Sbjct 2592 GAACCTCGGCAACCTGGACGTCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGC 2651 Query 13557 CGTCACTAGCAGCaaaaaaaGCAAG 13581 |||| ||||||||||| ||||| Sbjct 2652 CGTCTGAGGCAGCAAAAAAGGCAAG 2676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430756590811980