Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq728 107 2e-18
>seq728
Length=46982
Score = 107 bits (118), Expect = 2e-18
Identities = 479/745 (64%), Gaps = 19/745 (3%)
Strand=Plus/Plus
Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904
|||||||| || ||| ||||| || | |||||| || ||||| || || || || |||
Sbjct 1943 GACATAACTGAGGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 2002
Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTT---A 12961
| ||| ||| ||||| |||| || ||||| | || || | ||| | || |
Sbjct 2003 TGTAAACTAATCAGCTCCATCCAATCAAATGGATTCT--GAGCATT-GTACATCTTGTCA 2059
Query 12962 CACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCA 13021
| || || | |||||||||||||| |||||||||||||| | |||| |||||
Sbjct 2060 TAACCCAAAGCATCCAACAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCT 2119
Query 13022 CAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCA 13081
| |||||||| | | ||| | ||| || | || | ||||||| ||
Sbjct 2120 CCATTCATTCCCACCAGAGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCC 2179
Query 13082 ACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGAT--TTGATAG-ATGC 13138
|| || || ||| || | || | | || || || | || | | ||| | |
Sbjct 2180 ACAGCATCTGCAACAATTCCCCTGACT-CGCTC-CTCAGTTAGCTTCGTCCTTAGCAAAC 2237
Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTT 13198
| || | || ||| ||||||||||||||||| ||||| ||||| |||| ||| |||
Sbjct 2238 TGTAA-AGCAAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTT 2296
Query 13199 GAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAA 13258
|| || |||| || ||||| | ||| |||||||| | ||||||||| | | || | |
Sbjct 2297 GAGAAGGTTAATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCG-AACAGAAGCT 2355
Query 13259 CCCG-aaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACT 13317
||| || || || |||||||| ||||| || | ||| | || | | ||
Sbjct 2356 TCCGCTGAAGAAAATCCCTTCAACACAGGCAAAAGCCACCAAACGCTCCGCGAAGGT--- 2412
Query 13318 ATTTTTACTC-TCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATAT 13376
|| || | || ||||| |||||| || || || | || ||| || ||
Sbjct 2413 -TTCGGACCCATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTG 2471
Query 13377 TTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCA 13436
| || || || || || | | ||||| | | || || || | || | ||
Sbjct 2472 TCTCAATCGCACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACA 2531
Query 13437 ATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATC 13496
|| || ||||| || ||||| ||||| || || || |||||||| ||||| ||| |
Sbjct 2532 GCAAACTGTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCAC 2591
Query 13497 TAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCC 13556
| |||| | ||||| || || || ||| | || | ||| || ||| || |
Sbjct 2592 GAACCTCGGCAACCTGGACGTCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGC 2651
Query 13557 CGTCACTAGCAGCaaaaaaaGCAAG 13581
|||| ||||||||||| |||||
Sbjct 2652 CGTCTGAGGCAGCAAAAAAGGCAAG 2676
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430756590811980
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |