Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq16835 96.9 3e-15
seq558 87.8 2e-12
seq3886 86.0 5e-12
>seq16835
Length=8075
Score = 96.9 bits (106), Expect = 3e-15
Identities = 157/222 (71%), Gaps = 3/222 (1%)
Strand=Plus/Plus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575
||| | ||| || ||| |||||| || |||||||| || || || || || | ||||
Sbjct 6892 CACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC-AAGAGTACGACCATCCT 6950
Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635
| |||||||| ||| || |||| ||||||||||| || || | | ||||||||||
Sbjct 6951 CAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCT 7010
Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695
|| || |||| | | ||||| |||| |||||| ||| | || || || |
Sbjct 7011 GGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCT 7070
Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATCGT-GTCTTGA 48736
| || || || |||||||| || ||||||||| | |||| ||
Sbjct 7071 TCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTCGTCTGGA 7112
>seq558
Length=67963
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
|| || ||| |||||| || |||||||| ||||| | ||| | ||||| ||||||
Sbjct 17116 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGC 17175
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|||||| || |||| || |||||||| || || | | ||||||||| ||| ||
Sbjct 17176 TTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTA 17235
Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703
||| | | | ||||| || | ||||| ||| | || || || || || ||
Sbjct 17236 GCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTC 17295
Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726
|| || |||||||| ||||||||
Sbjct 17296 AGGGTCTTCACAAAGATCTGCAT 17318
>seq3886
Length=20373
Score = 86.0 bits (94), Expect = 5e-12
Identities = 148/213 (69%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| ||||| || ||| |||||| || ||||| |||||||| | || |||||||
Sbjct 13928 CACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCTAGAGTCCGTCCGTCCTC 13987
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|| |||||| ||| || | || | | |||||||| || | | ||||||||||
Sbjct 13988 CAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCAGGGGGAATCCCTTCCTTGTCCTG 14047
Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694
|| || ||| | | | || || ||||| | | ||| ||| | || || ||
Sbjct 14048 GATCTTAGCCTTAACGTTGTCG--ATTGTATCAGAACTTTCCACCTCTAGGGTGATAGTC 14105
Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
|| ||||||||||||||||| || |||||||||
Sbjct 14106 TTTCCGGTGAGAGTTTTCACGAAGATCTGCATC 14138
Score = 82.4 bits (90), Expect = 6e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582
||||| || |||||| || |||||||| || || || || || ||||||| |||||
Sbjct 13251 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC-AAGGGTGCGGCCGTCCTCGAGCTG 13309
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
|||||| || | || || | |||||| || || | | ||||||||| || ||
Sbjct 13310 CTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTT 13369
Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702
||| | | | ||||| |||| ||| ||| | || ||||| || |||||
Sbjct 13370 AGCCTTAACATTATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGT 13429
Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726
||| || |||||||||||||||||
Sbjct 13430 GAGGGTCTTCACAAAAATCTGCAT 13453
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421030489382990
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |