Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq3752 123 1e-23 seq2659 118 6e-22 seq13359 116 2e-21 seq33098 114 7e-21 seq21015 114 7e-21 seq36947 113 2e-20 seq30249 113 2e-20 seq24737 113 2e-20 seq17200 113 2e-20 seq15131 113 2e-20 seq6558 113 2e-20 seq35620 111 8e-20 seq1351 111 8e-20 seq1332 111 8e-20 seq415 111 8e-20 seq26922 109 3e-19 seq23633 109 3e-19 seq21178 109 3e-19 seq19348 109 3e-19 seq2200 109 3e-19 seq918 109 3e-19 seq740 109 3e-19 seq468 109 3e-19 seq31806 105 3e-18 seq14359 84.2 1e-11 >seq3752 Length=128668 Score = 123 bits (136), Expect = 1e-23 Identities = 87/100 (87%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||| |||| || ||| ||||||||| | | |||||||| |||||||||||||||||||| Sbjct 75802 TAAAAAAATATAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 75743 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGATT 11539 ||||||||| |||||||||||||||||||| | || |||| Sbjct 75742 CGACGCTCTAACCAACTGAGCTAATGGGCCCTTGATGATT 75703 >seq2659 Length=33090 Score = 118 bits (130), Expect = 6e-22 Identities = 87/101 (86%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||||| || | ||| ||| |||| |||||||| | | |||||||| ||||||||| Sbjct 31569 AAATATATAAACATTAACAAAAAAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCG 31627 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||||||||||||||||||| Sbjct 31628 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 31668 >seq13359 Length=14055 Score = 116 bits (128), Expect = 2e-21 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 8407 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 8348 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 8347 CAACTGAGCTAATGGGCC 8330 >seq33098 Length=14950 Score = 114 bits (126), Expect = 7e-21 Identities = 79/89 (89%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| | |||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 872 AAAAAAAAAT--ATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 929 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 930 GACGCTCTAACCAACTGAGCTAATGGGCC 958 >seq21015 Length=38305 Score = 114 bits (126), Expect = 7e-21 Identities = 77/86 (90%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 11850 AAAAAA--AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 11793 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 11792 GCTCTAACCAACTGAGCTAATGGGCC 11767 Score = 107 bits (118), Expect = 1e-18 Identities = 75/86 (87%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | | ||||||||| | | |||||||| |||| ||||||||||||||||||| Sbjct 31640 AAAAAATAATAATGGCCCATGCAGGTCTCGAACCTGCGACTTTCGCGTTATTAGCACGAC 31581 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| | |||||||||||||||||| Sbjct 31580 GCTCTAATCAACTGAGCTAATGGGCC 31555 >seq36947 Length=3866 Score = 113 bits (124), Expect = 2e-20 Identities = 77/86 (90%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | || |||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 1149 AAAAAATAAGAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 1207 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 1208 GCTCTAACCAACTGAGCTAATGGGCC 1233 >seq30249 Length=19729 Score = 113 bits (124), Expect = 2e-20 Identities = 83/96 (86%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 11435 AGAATTAATA-AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 |||| |||| ||||| | |||||||||| | | |||||||| |||||||||||||| Sbjct 13945 AGAAAAAATAGAAAAACCGTTTTGGCCCATGCATGTCTCGAACCTGCGACCTTCGCGTTA 13886 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||||||||||||||||||| Sbjct 13885 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 13850 >seq24737 Length=12961 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || || | || | ||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 4301 AAGAAGATATTATATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 4242 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 4241 GACGCTCTAACCAACTGAGCTAATGGGCC 4213 >seq17200 Length=19839 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || ||||||||| ||| |||||||| |||||||||| ||||||||||||| Sbjct 6426 AAAAAAAAAAGATGGCCCATGCAAGTCTCGAACCTGCGACCTTCGCATTATTAGCACGAC 6485 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 6486 GCTCTAACCAACTGAGCTAATGGGCC 6511 >seq15131 Length=17871 Score = 113 bits (124), Expect = 2e-20 Identities = 87/103 (84%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAA--TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 ||||||| | | |||||||| | ||| ||||||||| | | |||||||| ||||||| Sbjct 693 AAATATAAATGTTATAAAAAAATTAAAACTGGCCCATGCAGGTTTCGAACCTGCGACCTT 634 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 | |||||||||||||| ||||| |||||||||||||||||||| Sbjct 633 CACGTTATTAGCACGATGCTCTAACCAACTGAGCTAATGGGCC 591 >seq6558 Length=18099 Score = 113 bits (124), Expect = 2e-20 Identities = 77/86 (90%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| |||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 2641 AAAAAAAAAATATGGCCCATGCAGGACTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 2582 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 2581 GCTCTAACCAACTGAGCTAATGGGCC 2556 >seq35620 Length=10007 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 641 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 582 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 581 CAACTGAGCTAATGGGCC 564 >seq1351 Length=28217 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 14740 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 14799 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 14800 CTGAGCTAATGGGCC 14814 >seq1332 Length=95695 Score = 111 bits (122), Expect = 8e-20 Identities = 77/88 (88%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||||| | ||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 90665 ATAAAAAAGTATTATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 90606 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 90605 ACGCTCTAACCAACTGAGCTAATGGGCC 90578 >seq415 Length=87348 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 24197 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 24138 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 24137 CTGAGCTAATGGGCC 24123 >seq26922 Length=27932 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 11833 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 11774 Query 11516 TGAGCTAATGGGCCGTC 11532 |||||||||||||| || Sbjct 11773 TGAGCTAATGGGCCATC 11757 >seq23633 Length=40397 Score = 109 bits (120), Expect = 3e-19 Identities = 77/88 (88%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 || |||||| || ||||||||| | | ||||| || |||||||||||||||||||||| Sbjct 34189 ATTAAAAATAAA--TGGCCCATGCAGGTCTCGAATCTGCGACCTTCGCGTTATTAGCACG 34132 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 34131 ACGCTCTAACCAACTGAGCTAATGGGCC 34104 >seq21178 Length=7503 Score = 109 bits (120), Expect = 3e-19 Identities = 77/88 (88%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 11445 AAAAATCAAATT---GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||| ||| | |||||||| | | |||||||| |||||||||||||||||||||| Sbjct 5097 AAAAATAAAAATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 5038 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 5037 ACGCTCTAACCAACTGAGCTAATGGGCC 5010 >seq19348 Length=27322 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 14663 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 14722 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 14723 TGAGCTAATGGGCC 14736 >seq2200 Length=50812 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 21778 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 21719 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 21718 TGAGCTAATGGGCC 21705 >seq918 Length=59895 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 10808 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 10867 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 10868 TGAGCTAATGGGCC 10881 >seq740 Length=139510 Score = 109 bits (120), Expect = 3e-19 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 82224 AAAAAATTTA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 82167 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 82166 GCTCTAACCAACTGAGCTAATGGGCC 82141 >seq468 Length=185208 Score = 109 bits (120), Expect = 3e-19 Identities = 80/93 (86%), Gaps = 3/93 (3%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||| | ||||||| | ||||||||| | | |||||||| |||||||||| |||||| Sbjct 141796 AATTGAAAAAAAATAA---TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCATTATTA 141740 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 141739 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 141707 >seq31806 Length=9518 Score = 105 bits (116), Expect = 3e-18 Identities = 74/84 (88%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 11448 AATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||| |||| ||||||||| | | |||||||| |||||||||||||||||||| ||||| Sbjct 583 AATAAAATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCATGACGC 524 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||||||||| Sbjct 523 TCTAACCAACTGAGCTAATGGGCC 500 >seq14359 Length=22132 Score = 84.2 bits (92), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||| | | ||| || ||| ||| | | ||||||||| | | |||||||| |||||||| Sbjct 5409 AAAAAAAAAATAAAAAAATAATTTATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTC 5350 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 || | | ||||||||||| |||||||||||||||||||| Sbjct 5349 GCAAAAAAAACACGACGCTCTAACCAACTGAGCTAATGGGCC 5308 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261354194137240