Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq3752 123 1e-23
seq2659 118 6e-22
seq13359 116 2e-21
seq33098 114 7e-21
seq21015 114 7e-21
seq36947 113 2e-20
seq30249 113 2e-20
seq24737 113 2e-20
seq17200 113 2e-20
seq15131 113 2e-20
seq6558 113 2e-20
seq35620 111 8e-20
seq1351 111 8e-20
seq1332 111 8e-20
seq415 111 8e-20
seq26922 109 3e-19
seq23633 109 3e-19
seq21178 109 3e-19
seq19348 109 3e-19
seq2200 109 3e-19
seq918 109 3e-19
seq740 109 3e-19
seq468 109 3e-19
seq31806 105 3e-18
seq14359 84.2 1e-11
>seq3752
Length=128668
Score = 123 bits (136), Expect = 1e-23
Identities = 87/100 (87%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499
||| |||| || ||| ||||||||| | | |||||||| ||||||||||||||||||||
Sbjct 75802 TAAAAAAATATAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 75743
Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGATT 11539
||||||||| |||||||||||||||||||| | || ||||
Sbjct 75742 CGACGCTCTAACCAACTGAGCTAATGGGCCCTTGATGATT 75703
>seq2659
Length=33090
Score = 118 bits (130), Expect = 6e-22
Identities = 87/101 (86%), Gaps = 1/101 (1%)
Strand=Plus/Plus
Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488
||||||| || | ||| ||| |||| |||||||| | | |||||||| |||||||||
Sbjct 31569 AAATATATAAACATTAACAAAAAAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCG 31627
Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||||||||| ||||||||||||||||||||
Sbjct 31628 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 31668
>seq13359
Length=14055
Score = 116 bits (128), Expect = 2e-21
Identities = 72/78 (92%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 8407 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 8348
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||||||||
Sbjct 8347 CAACTGAGCTAATGGGCC 8330
>seq33098
Length=14950
Score = 114 bits (126), Expect = 7e-21
Identities = 79/89 (89%), Gaps = 2/89 (2%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| ||||||| | |||||||||| | | |||||||| |||||||||||||||||||||
Sbjct 872 AAAAAAAAAT--ATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 929
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||||||||||
Sbjct 930 GACGCTCTAACCAACTGAGCTAATGGGCC 958
>seq21015
Length=38305
Score = 114 bits (126), Expect = 7e-21
Identities = 77/86 (90%), Gaps = 2/86 (2%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||||
Sbjct 11850 AAAAAA--AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 11793
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||||||||
Sbjct 11792 GCTCTAACCAACTGAGCTAATGGGCC 11767
Score = 107 bits (118), Expect = 1e-18
Identities = 75/86 (87%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||||| | | ||||||||| | | |||||||| |||| |||||||||||||||||||
Sbjct 31640 AAAAAATAATAATGGCCCATGCAGGTCTCGAACCTGCGACTTTCGCGTTATTAGCACGAC 31581
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| | ||||||||||||||||||
Sbjct 31580 GCTCTAATCAACTGAGCTAATGGGCC 31555
>seq36947
Length=3866
Score = 113 bits (124), Expect = 2e-20
Identities = 77/86 (90%), Gaps = 1/86 (1%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||||| | || |||||||| | | |||||||| ||||||||||||||||||||||||
Sbjct 1149 AAAAAATAAGAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 1207
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||||||||
Sbjct 1208 GCTCTAACCAACTGAGCTAATGGGCC 1233
>seq30249
Length=19729
Score = 113 bits (124), Expect = 2e-20
Identities = 83/96 (86%), Gaps = 1/96 (1%)
Strand=Plus/Minus
Query 11435 AGAATTAATA-AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493
|||| |||| ||||| | |||||||||| | | |||||||| ||||||||||||||
Sbjct 13945 AGAAAAAATAGAAAAACCGTTTTGGCCCATGCATGTCTCGAACCTGCGACCTTCGCGTTA 13886
Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||||| ||||||||||||||||||||
Sbjct 13885 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 13850
>seq24737
Length=12961
Score = 113 bits (124), Expect = 2e-20
Identities = 78/89 (88%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| || | || | ||||||||||| | | |||||||| |||||||||||||||||||||
Sbjct 4301 AAGAAGATATTATATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 4242
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||||||||||
Sbjct 4241 GACGCTCTAACCAACTGAGCTAATGGGCC 4213
>seq17200
Length=19839
Score = 113 bits (124), Expect = 2e-20
Identities = 76/86 (88%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||||| || ||||||||| ||| |||||||| |||||||||| |||||||||||||
Sbjct 6426 AAAAAAAAAAGATGGCCCATGCAAGTCTCGAACCTGCGACCTTCGCATTATTAGCACGAC 6485
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||||||||
Sbjct 6486 GCTCTAACCAACTGAGCTAATGGGCC 6511
>seq15131
Length=17871
Score = 113 bits (124), Expect = 2e-20
Identities = 87/103 (84%), Gaps = 2/103 (2%)
Strand=Plus/Minus
Query 11429 AAATATAGAATTAATAAAAAA--TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486
||||||| | | |||||||| | ||| ||||||||| | | |||||||| |||||||
Sbjct 693 AAATATAAATGTTATAAAAAAATTAAAACTGGCCCATGCAGGTTTCGAACCTGCGACCTT 634
Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 633 CACGTTATTAGCACGATGCTCTAACCAACTGAGCTAATGGGCC 591
>seq6558
Length=18099
Score = 113 bits (124), Expect = 2e-20
Identities = 77/86 (90%), Gaps = 1/86 (1%)
Strand=Plus/Minus
Query 11445 AAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||| |||| ||||||||| | | |||||||| ||||||||||||||||||||||||
Sbjct 2641 AAAAAAAAAATATGGCCCATGCAGGACTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 2582
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||||||||
Sbjct 2581 GCTCTAACCAACTGAGCTAATGGGCC 2556
>seq35620
Length=10007
Score = 111 bits (122), Expect = 8e-20
Identities = 71/78 (91%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 641 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 582
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||||||||
Sbjct 581 CAACTGAGCTAATGGGCC 564
>seq1351
Length=28217
Score = 111 bits (122), Expect = 8e-20
Identities = 69/75 (92%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 14740 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 14799
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||||||||
Sbjct 14800 CTGAGCTAATGGGCC 14814
>seq1332
Length=95695
Score = 111 bits (122), Expect = 8e-20
Identities = 77/88 (88%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501
|||||||| | ||||||||| | | |||||||| ||||||||||||||||||||||
Sbjct 90665 ATAAAAAAGTATTATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 90606
Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||| ||||||||||||||||||||
Sbjct 90605 ACGCTCTAACCAACTGAGCTAATGGGCC 90578
>seq415
Length=87348
Score = 111 bits (122), Expect = 8e-20
Identities = 69/75 (92%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 24197 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 24138
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||||||||
Sbjct 24137 CTGAGCTAATGGGCC 24123
>seq26922
Length=27932
Score = 109 bits (120), Expect = 3e-19
Identities = 70/77 (91%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 11833 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 11774
Query 11516 TGAGCTAATGGGCCGTC 11532
|||||||||||||| ||
Sbjct 11773 TGAGCTAATGGGCCATC 11757
>seq23633
Length=40397
Score = 109 bits (120), Expect = 3e-19
Identities = 77/88 (88%), Gaps = 2/88 (2%)
Strand=Plus/Minus
Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501
|| |||||| || ||||||||| | | ||||| || ||||||||||||||||||||||
Sbjct 34189 ATTAAAAATAAA--TGGCCCATGCAGGTCTCGAATCTGCGACCTTCGCGTTATTAGCACG 34132
Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||| ||||||||||||||||||||
Sbjct 34131 ACGCTCTAACCAACTGAGCTAATGGGCC 34104
>seq21178
Length=7503
Score = 109 bits (120), Expect = 3e-19
Identities = 77/88 (88%), Gaps = 3/88 (3%)
Strand=Plus/Minus
Query 11445 AAAAATCAAATT---GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501
|||||| ||| | |||||||| | | |||||||| ||||||||||||||||||||||
Sbjct 5097 AAAAATAAAAATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 5038
Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||| ||||||||||||||||||||
Sbjct 5037 ACGCTCTAACCAACTGAGCTAATGGGCC 5010
>seq19348
Length=27322
Score = 109 bits (120), Expect = 3e-19
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 14663 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 14722
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 14723 TGAGCTAATGGGCC 14736
>seq2200
Length=50812
Score = 109 bits (120), Expect = 3e-19
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 21778 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 21719
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 21718 TGAGCTAATGGGCC 21705
>seq918
Length=59895
Score = 109 bits (120), Expect = 3e-19
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 10808 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 10867
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 10868 TGAGCTAATGGGCC 10881
>seq740
Length=139510
Score = 109 bits (120), Expect = 3e-19
Identities = 76/86 (88%), Gaps = 2/86 (2%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||||| | ||||||||| | | |||||||| ||||||||||||||||||||||||
Sbjct 82224 AAAAAATTTA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 82167
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||||||||
Sbjct 82166 GCTCTAACCAACTGAGCTAATGGGCC 82141
>seq468
Length=185208
Score = 109 bits (120), Expect = 3e-19
Identities = 80/93 (86%), Gaps = 3/93 (3%)
Strand=Plus/Minus
Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496
|||| | ||||||| | ||||||||| | | |||||||| |||||||||| ||||||
Sbjct 141796 AATTGAAAAAAAATAA---TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCATTATTA 141740
Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||| ||||||||||||||||||||
Sbjct 141739 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 141707
>seq31806
Length=9518
Score = 105 bits (116), Expect = 3e-18
Identities = 74/84 (88%), Gaps = 2/84 (2%)
Strand=Plus/Minus
Query 11448 AATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505
||| |||| ||||||||| | | |||||||| |||||||||||||||||||| |||||
Sbjct 583 AATAAAATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCATGACGC 524
Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529
||| ||||||||||||||||||||
Sbjct 523 TCTAACCAACTGAGCTAATGGGCC 500
>seq14359
Length=22132
Score = 84.2 bits (92), Expect = 1e-11
Identities = 80/102 (78%), Gaps = 1/102 (1%)
Strand=Plus/Minus
Query 11429 AAATATAGAATTAATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487
||| | | ||| || ||| ||| | | ||||||||| | | |||||||| ||||||||
Sbjct 5409 AAAAAAAAAATAAAAAAATAATTTATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTC 5350
Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|| | | ||||||||||| ||||||||||||||||||||
Sbjct 5349 GCAAAAAAAACACGACGCTCTAACCAACTGAGCTAATGGGCC 5308
Lambda K H
0.638 0.409 0.919
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261354194137240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |