Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq32410 145 1e-30
seq3161 140 5e-29
seq3163 138 2e-28
seq16437 136 6e-28
seq3918 136 6e-28
seq3159 134 2e-27
seq11718 129 9e-26
seq27161 109 9e-20
seq11494 107 3e-19
>seq32410
Length=16483
Score = 145 bits (160), Expect = 1e-30
Identities = 179/242 (74%), Gaps = 2/242 (1%)
Strand=Plus/Plus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||||||||| ||||| || |||||||||||||| ||| | || |||||| | ||||| |
Sbjct 12259 GAGATAACATTCAAGGTATTACCAAGCCAGCTATTCGTAGGCTTGCTCGTAGAGGTGGGG 12318
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| |||||| | ||||||||| | ||||| || | ||||| ||| | |||||||| ||
Sbjct 12319 TGAAGCGTATTTCTGGATTGATTTATGAGGAAACTCGTGGGGTTCTTAAGATCTTTCTTG 12378
Query 16578 AGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
| | || || | ||||||| || || ||||| || || |||| | |||||||| ||
Sbjct 12379 AAAATGTGATTCGTGATGCTGTTACA-TATACTGAACATGCTAGGAGAAAGACTGTGACG 12437
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696
| |||||| | || ||||| | || | ||||| | | |||| || |||||| ||
Sbjct 12438 GCTATGGATGTTGTTTATGCTCTTAAGAGGCAAGGAAGGACCCTTTACGGATTTGGAGGT 12497
Query 16697 TA 16698
||
Sbjct 12498 TA 12499
>seq3161
Length=10973
Score = 140 bits (154), Expect = 5e-29
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|| ||||||||||| ||||| ||||||||||| || | || |||||| | ||||| ||
Sbjct 2931 GACAACATCCAAGGTATCACTAAGCCAGCTATTCGAAGGCTTGCTCGTAGGGGTGGTGTG 2872
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
|||||| ||||||| | ||||||| |||| |||| || ||||||||||| | ||
Sbjct 2871 AAGCGTATCTCTGGTCTCATCTATGAGGAGACCCGTGGAGTGTTGAAGATCTTTTTGGAG 2812
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| || || | |||| || || ||| || |||||||| | | ||||||||||| |
Sbjct 2811 AATGTGATTCGTGATTCTGTCACCTACACTGAGCACGCCAGGAGGAAGACTGTCACTGCT 2752
Query 16640 ATGGATATCGTCTATGC 16656
|||||| | ||||||||
Sbjct 2751 ATGGATGTTGTCTATGC 2735
>seq3163
Length=116021
Score = 138 bits (152), Expect = 2e-28
Identities = 175/241 (73%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| || ||||| || ||||| ||||||||||| || | || |||||| | ||||| |
Sbjct 20286 GAGACAATATCCAGGGTATCACTAAGCCAGCTATTCGCAGGCTTGCTCGTAGGGGTGGTG 20227
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| |||||| |||| || || ||||||| |||| |||| || ||||||||||| |
Sbjct 20226 TGAAGCGTATCTCCGGTCTGATCTATGAGGAGACCCGTGGAGTATTGAAGATCTTTTTGG 20167
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| || || | ||| || || ||| || |||||||| | | |||||||||||
Sbjct 20166 AGAATGTGATTCGTGACTCTGTCACCTACACTGAGCACGCCAGGAGGAAGACTGTCACTG 20107
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
| |||||| |||||||||| | || | || || | | | ||||||||||| |||
Sbjct 20106 CTATGGATGTCGTCTATGCTCTTAAGAGACAGGGAAGGACTCTCTATGGTTTTGGCGGTT 20047
Query 16698 A 16698
|
Sbjct 20046 A 20046
Score = 129 bits (142), Expect = 9e-26
Identities = 148/199 (74%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| || ||||| || ||||| ||||||||||| || | || |||||| | ||||| |
Sbjct 15487 GAGACAATATCCAGGGTATCACTAAGCCAGCTATTCGCAGGCTTGCTCGTAGGGGTGGTG 15428
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| |||||| |||| || || ||||||| |||| |||| || ||||||||||| |
Sbjct 15427 TGAAGCGTATCTCCGGTCTGATCTATGAGGAGACCCGTGGAGTATTGAAGATCTTTTTGG 15368
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| || || | ||| || || ||| || |||||||| | | |||||||||||
Sbjct 15367 AGAATGTGATTCGTGACTCTGTCACCTACACTGAGCACGCCAGGAGGAAGACTGTCACTG 15308
Query 16638 CCATGGATATCGTCTATGC 16656
| |||||| | ||||||||
Sbjct 15307 CGATGGATGTTGTCTATGC 15289
>seq16437
Length=43088
Score = 136 bits (150), Expect = 6e-28
Identities = 177/242 (73%), Gaps = 2/242 (1%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||||||||| ||||| || |||||||||||||| ||| | || |||||| | ||||| |
Sbjct 40283 GAGATAACATTCAAGGTATTACCAAGCCAGCTATTCGTAGGCTTGCTCGTAGAGGTGGGG 40224
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| |||||| | ||||||||| | ||||| || | ||||| ||| | |||||||| ||
Sbjct 40223 TGAAGCGTATTTCTGGATTGATTTATGAGGAAACTCGTGGGGTTCTTAAGATCTTTCTTG 40164
Query 16578 AGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
| | || || | ||||||| || || ||||| || || |||| | ||||||||
Sbjct 40163 AAAATGTGATTCGTGATGCTGTTACA-TATACTGAACATGCTAGGAGAAAGACTGTTTTT 40105
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696
| |||||| | || ||||| | || | ||||| | | |||| || |||||| ||
Sbjct 40104 TTTATGGATGTTGTTTATGCTCTTAAGAGGCAAGGAAGGACCCTTTACGGATTTGGAGGT 40045
Query 16697 TA 16698
||
Sbjct 40044 TA 40043
>seq3918
Length=46173
Score = 136 bits (150), Expect = 6e-28
Identities = 189/265 (71%), Gaps = 0/265 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| || | || || |||||||||||||| || || ||||| |||||
Sbjct 21447 GCGAAGCGTCACCGTAAGGTGCTCCGTGATAACATCCAAGGTATTACTAAGCCTGCTATT 21506
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||| |||||||| | || ||||| |||||| | ||| || ||||||| |||| |
Sbjct 21507 CGGCGTTTGGCTCGTAGAGGAGGAGTGAAGCGTATTAGTGGGCTGATCTATGAGGAGACT 21566
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| |||||||||||||| | ||| || || | ||| || | || || |||
Sbjct 21567 CGTGGGGTTTTGAAGATCTTTTTGGAGAATGTGATTCGTGACTCTGTTACTTACACTGAG 21626
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| |||| | ||||| || || | |||||| | || |||||| | || | |||||
Sbjct 21627 CATGCTAGGAGGAAGACGGTGACTGCTATGGATGTTGTGTATGCACTCAAGAGACAAGGA 21686
Query 16673 CGTAAGATTTATGGTTTTGGAAGTT 16697
| | | |||||||||||| |||
Sbjct 21687 AGGACTTTGTATGGTTTTGGAGGTT 21711
Score = 132 bits (146), Expect = 8e-27
Identities = 177/246 (72%), Gaps = 0/246 (0%)
Strand=Plus/Minus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || |||||||| ||||| ||||| ||||| || || | ||| | |||||| | ||
Sbjct 7712 CTCCGTGATAACATTCAAGGTATCACTAAGCCTGCAATTAGGCGTTTAGCTCGTAGAGGA 7653
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
||||| |||||| || |||| | ||||||| |||| ||||| ||||||||||||||
Sbjct 7652 GGAGTGAAGCGTATCAGTGGACTAATCTATGAGGAGACTCGTGGAGTTTTGAAGATCTTT 7593
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
| ||| || || | |||| || | || || ||||| |||| | ||||| |||
Sbjct 7592 TTGGAGAATGTGATTCGTGATTCTGTTACTTACACTGAGCATGCTAGGAGGAAGACCGTC 7533
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693
|| | ||||| | ||||||||| | || | ||||| | | ||||||| |||||
Sbjct 7532 ACTGCTATGGACGTTGTCTATGCACTCAAGAGGCAAGGAAGGACTCTTTATGGATTTGGT 7473
Query 16694 AGTTAA 16699
|||||
Sbjct 7472 GGTTAA 7467
>seq3159
Length=16181
Score = 134 bits (148), Expect = 2e-27
Identities = 149/199 (75%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| ||||||||||| ||||| ||||||||||| || | || || ||| | ||||| |
Sbjct 15182 GAGACAACATCCAAGGTATCACTAAGCCAGCTATTCGCAGGCTTGCACGTAGGGGTGGTG 15123
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| |||||| ||||||| | ||||||| |||| |||| || ||||||||||| |
Sbjct 15122 TGAAGCGTATCTCTGGTCTAATCTATGAGGAGACCCGTGGAGTGTTGAAGATCTTTTTGG 15063
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| || || | ||| || || ||| || |||||||| | | |||||||||||
Sbjct 15062 AGAATGTGATTCGTGACTCTGTCACCTACACTGAGCACGCCAGGAGGAAGACTGTCACTG 15003
Query 16638 CCATGGATATCGTCTATGC 16656
| |||||| | ||||||||
Sbjct 15002 CTATGGATGTTGTCTATGC 14984
>seq11718
Length=44627
Score = 129 bits (142), Expect = 9e-26
Identities = 173/241 (72%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| || || |||||||| || ||||||||||| || | || |||||| | ||||| |
Sbjct 31933 GAGACAATATTCAAGGAATTACAAAGCCAGCTATTCGAAGACTCGCTCGTAGAGGTGGTG 31992
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| |||||| | ||||| ||| | || ||||||| ||||| |||||||||||||| |
Sbjct 31993 TGAAGCGTATTTCTGGGTTGATTTACGAAGAGACTCGTGGGGTTTTGAAGATCTTTTTGG 32052
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
| | || || | |||| || | || || |||||||||| | ||||| || ||
Sbjct 32053 AAAATGTGATTCGTGATTCTGTTACTTACACAGAGCACGCTAGGAGAAAGACGGTTACTG 32112
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
| |||||| | || |||||| | || | ||||| | | |||| || ||||| |||
Sbjct 32113 CTATGGATGTTGTTTATGCACTTAAGAGGCAAGGAAGGACCCTTTACGGATTTGGGGGTT 32172
Query 16698 A 16698
|
Sbjct 32173 A 32173
Score = 120 bits (132), Expect = 5e-23
Identities = 171/241 (71%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| || ||||||||||| || ||||||||||| || | || |||||| | ||||| |
Sbjct 34905 GAGACAATATCCAAGGAATTACAAAGCCAGCTATTCGAAGACTAGCTCGTAGAGGTGGTG 34964
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| |||||| | ||||| ||| | || ||||||| ||||| ||| |||||||||| |
Sbjct 34965 TGAAGCGTATTTCTGGGTTGATTTACGAAGAGACTCGTGGGGTTCTGAAGATCTTTTTGG 35024
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
| | || || | |||| | | || || |||||||||| | ||||| || ||
Sbjct 35025 AAAATGTGATTCGTGATTCCGTGACATACACAGAGCACGCTAGGAGAAAGACGGTTACTG 35084
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
| |||||| | || ||||| | || | ||||| | | |||| || ||||| |||
Sbjct 35085 CTATGGATGTTGTTTATGCGCTTAAGAGGCAAGGAAGGACCCTTTACGGATTTGGGGGTT 35144
Query 16698 A 16698
|
Sbjct 35145 A 35145
>seq27161
Length=29341
Score = 109 bits (120), Expect = 9e-20
Identities = 185/268 (69%), Gaps = 0/268 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| || ||||| || | | ||| || |||||||| || |||||||| ||||| || ||
Sbjct 12836 GCAAAACGTCACCGGAAAGTTCTCCGTGATAACATTCAGGGAATCACTAAGCCGGCGATA 12777
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
| | |||| | | |||||||| ||| | || |||||| |||||||||| |
Sbjct 12776 AGGAGGTTGGCGAGAAGAGGTGGAGTGAAGAGAATCAGTGGATTAATCTATGAAGAAACA 12717
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
| | |||||||||||||| | ||| || || | |||| || | ||||| ||
Sbjct 12716 AGAGGCGTTTTGAAGATCTTTTTGGAGAATGTGATTCGTGATTCTGTGACTTATACTGAA 12657
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| |||| | |||||||| || | |||||| | || ||||| ||||| | |||||
Sbjct 12656 CATGCTAGGAGAAAGACTGTTACTGCTATGGATGTTGTTTATGCTTTGAAGAGACAAGGA 12597
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700
| | ||||||| ||||| ||| ||
Sbjct 12596 AGGACTCTTTATGGATTTGGTGGTTGAT 12569
>seq11494
Length=37673
Score = 107 bits (118), Expect = 3e-19
Identities = 184/267 (69%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| || |||||||| | ||||| || |||||||| |||||||||||||| |||||
Sbjct 1229 GCAAAACGTCATCGTAAGGTGCTTCGTGACAACATCCAGGGAATCACCAAGCCTGCTATT 1288
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
| | |||| | | |||||||| ||| | || ||| ||| | ||||||||||
Sbjct 1289 AGGAGGTTGGCGAGAAGAGGTGGAGTAAAGAGAATCAGTGGGTTGATTTATGAAGAGACA 1348
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
| | |||| | |||||||| | ||| || || | |||| || | ||| || ||
Sbjct 1349 AGAGGTGTTCTTAAGATCTTTTTGGAGAATGTGATTCGTGATTCTGTTACCTACACAGAA 1408
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| |||| | |||||||| || | |||||| | || ||||| ||||| | |||||
Sbjct 1409 CATGCTAGGAGAAAGACTGTTACTGCTATGGATGTTGTTTATGCTTTGAAGAGACAAGGA 1468
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | | ||||| || || |||||
Sbjct 1469 AGAACTCTCTATGGGTTCGGTGGTTAA 1495
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79035893942070
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