Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq32410 145 1e-30 seq3161 140 5e-29 seq3163 138 2e-28 seq16437 136 6e-28 seq3918 136 6e-28 seq3159 134 2e-27 seq11718 129 9e-26 seq27161 109 9e-20 seq11494 107 3e-19 >seq32410 Length=16483 Score = 145 bits (160), Expect = 1e-30 Identities = 179/242 (74%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| ||||| || |||||||||||||| ||| | || |||||| | ||||| | Sbjct 12259 GAGATAACATTCAAGGTATTACCAAGCCAGCTATTCGTAGGCTTGCTCGTAGAGGTGGGG 12318 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | ||||||||| | ||||| || | ||||| ||| | |||||||| || Sbjct 12319 TGAAGCGTATTTCTGGATTGATTTATGAGGAAACTCGTGGGGTTCTTAAGATCTTTCTTG 12378 Query 16578 AGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | || || | ||||||| || || ||||| || || |||| | |||||||| || Sbjct 12379 AAAATGTGATTCGTGATGCTGTTACA-TATACTGAACATGCTAGGAGAAAGACTGTGACG 12437 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | |||||| | || ||||| | || | ||||| | | |||| || |||||| || Sbjct 12438 GCTATGGATGTTGTTTATGCTCTTAAGAGGCAAGGAAGGACCCTTTACGGATTTGGAGGT 12497 Query 16697 TA 16698 || Sbjct 12498 TA 12499 >seq3161 Length=10973 Score = 140 bits (154), Expect = 5e-29 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||||||||| ||||| ||||||||||| || | || |||||| | ||||| || Sbjct 2931 GACAACATCCAAGGTATCACTAAGCCAGCTATTCGAAGGCTTGCTCGTAGGGGTGGTGTG 2872 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| ||||||| | ||||||| |||| |||| || ||||||||||| | || Sbjct 2871 AAGCGTATCTCTGGTCTCATCTATGAGGAGACCCGTGGAGTGTTGAAGATCTTTTTGGAG 2812 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | |||| || || ||| || |||||||| | | ||||||||||| | Sbjct 2811 AATGTGATTCGTGATTCTGTCACCTACACTGAGCACGCCAGGAGGAAGACTGTCACTGCT 2752 Query 16640 ATGGATATCGTCTATGC 16656 |||||| | |||||||| Sbjct 2751 ATGGATGTTGTCTATGC 2735 >seq3163 Length=116021 Score = 138 bits (152), Expect = 2e-28 Identities = 175/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| || ||||| || ||||| ||||||||||| || | || |||||| | ||||| | Sbjct 20286 GAGACAATATCCAGGGTATCACTAAGCCAGCTATTCGCAGGCTTGCTCGTAGGGGTGGTG 20227 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| |||| || || ||||||| |||| |||| || ||||||||||| | Sbjct 20226 TGAAGCGTATCTCCGGTCTGATCTATGAGGAGACCCGTGGAGTATTGAAGATCTTTTTGG 20167 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||| || || ||| || |||||||| | | ||||||||||| Sbjct 20166 AGAATGTGATTCGTGACTCTGTCACCTACACTGAGCACGCCAGGAGGAAGACTGTCACTG 20107 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| |||||||||| | || | || || | | | ||||||||||| ||| Sbjct 20106 CTATGGATGTCGTCTATGCTCTTAAGAGACAGGGAAGGACTCTCTATGGTTTTGGCGGTT 20047 Query 16698 A 16698 | Sbjct 20046 A 20046 Score = 129 bits (142), Expect = 9e-26 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| || ||||| || ||||| ||||||||||| || | || |||||| | ||||| | Sbjct 15487 GAGACAATATCCAGGGTATCACTAAGCCAGCTATTCGCAGGCTTGCTCGTAGGGGTGGTG 15428 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| |||| || || ||||||| |||| |||| || ||||||||||| | Sbjct 15427 TGAAGCGTATCTCCGGTCTGATCTATGAGGAGACCCGTGGAGTATTGAAGATCTTTTTGG 15368 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||| || || ||| || |||||||| | | ||||||||||| Sbjct 15367 AGAATGTGATTCGTGACTCTGTCACCTACACTGAGCACGCCAGGAGGAAGACTGTCACTG 15308 Query 16638 CCATGGATATCGTCTATGC 16656 | |||||| | |||||||| Sbjct 15307 CGATGGATGTTGTCTATGC 15289 >seq16437 Length=43088 Score = 136 bits (150), Expect = 6e-28 Identities = 177/242 (73%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| ||||| || |||||||||||||| ||| | || |||||| | ||||| | Sbjct 40283 GAGATAACATTCAAGGTATTACCAAGCCAGCTATTCGTAGGCTTGCTCGTAGAGGTGGGG 40224 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | ||||||||| | ||||| || | ||||| ||| | |||||||| || Sbjct 40223 TGAAGCGTATTTCTGGATTGATTTATGAGGAAACTCGTGGGGTTCTTAAGATCTTTCTTG 40164 Query 16578 AGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | || || | ||||||| || || ||||| || || |||| | |||||||| Sbjct 40163 AAAATGTGATTCGTGATGCTGTTACA-TATACTGAACATGCTAGGAGAAAGACTGTTTTT 40105 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | |||||| | || ||||| | || | ||||| | | |||| || |||||| || Sbjct 40104 TTTATGGATGTTGTTTATGCTCTTAAGAGGCAAGGAAGGACCCTTTACGGATTTGGAGGT 40045 Query 16697 TA 16698 || Sbjct 40044 TA 40043 >seq3918 Length=46173 Score = 136 bits (150), Expect = 6e-28 Identities = 189/265 (71%), Gaps = 0/265 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | || || |||||||||||||| || || ||||| ||||| Sbjct 21447 GCGAAGCGTCACCGTAAGGTGCTCCGTGATAACATCCAAGGTATTACTAAGCCTGCTATT 21506 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||||||| | || ||||| |||||| | ||| || ||||||| |||| | Sbjct 21507 CGGCGTTTGGCTCGTAGAGGAGGAGTGAAGCGTATTAGTGGGCTGATCTATGAGGAGACT 21566 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||||||||||||| | ||| || || | ||| || | || || ||| Sbjct 21567 CGTGGGGTTTTGAAGATCTTTTTGGAGAATGTGATTCGTGACTCTGTTACTTACACTGAG 21626 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || |||| | ||||| || || | |||||| | || |||||| | || | ||||| Sbjct 21627 CATGCTAGGAGGAAGACGGTGACTGCTATGGATGTTGTGTATGCACTCAAGAGACAAGGA 21686 Query 16673 CGTAAGATTTATGGTTTTGGAAGTT 16697 | | | |||||||||||| ||| Sbjct 21687 AGGACTTTGTATGGTTTTGGAGGTT 21711 Score = 132 bits (146), Expect = 8e-27 Identities = 177/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||| ||||| ||||| ||||| || || | ||| | |||||| | || Sbjct 7712 CTCCGTGATAACATTCAAGGTATCACTAAGCCTGCAATTAGGCGTTTAGCTCGTAGAGGA 7653 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| || |||| | ||||||| |||| ||||| |||||||||||||| Sbjct 7652 GGAGTGAAGCGTATCAGTGGACTAATCTATGAGGAGACTCGTGGAGTTTTGAAGATCTTT 7593 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || || | |||| || | || || ||||| |||| | ||||| ||| Sbjct 7592 TTGGAGAATGTGATTCGTGATTCTGTTACTTACACTGAGCATGCTAGGAGGAAGACCGTC 7533 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | ||||| | ||||||||| | || | ||||| | | ||||||| ||||| Sbjct 7532 ACTGCTATGGACGTTGTCTATGCACTCAAGAGGCAAGGAAGGACTCTTTATGGATTTGGT 7473 Query 16694 AGTTAA 16699 ||||| Sbjct 7472 GGTTAA 7467 >seq3159 Length=16181 Score = 134 bits (148), Expect = 2e-27 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||| ||||| ||||||||||| || | || || ||| | ||||| | Sbjct 15182 GAGACAACATCCAAGGTATCACTAAGCCAGCTATTCGCAGGCTTGCACGTAGGGGTGGTG 15123 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| ||||||| | ||||||| |||| |||| || ||||||||||| | Sbjct 15122 TGAAGCGTATCTCTGGTCTAATCTATGAGGAGACCCGTGGAGTGTTGAAGATCTTTTTGG 15063 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||| || || ||| || |||||||| | | ||||||||||| Sbjct 15062 AGAATGTGATTCGTGACTCTGTCACCTACACTGAGCACGCCAGGAGGAAGACTGTCACTG 15003 Query 16638 CCATGGATATCGTCTATGC 16656 | |||||| | |||||||| Sbjct 15002 CTATGGATGTTGTCTATGC 14984 >seq11718 Length=44627 Score = 129 bits (142), Expect = 9e-26 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| || || |||||||| || ||||||||||| || | || |||||| | ||||| | Sbjct 31933 GAGACAATATTCAAGGAATTACAAAGCCAGCTATTCGAAGACTCGCTCGTAGAGGTGGTG 31992 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | ||||| ||| | || ||||||| ||||| |||||||||||||| | Sbjct 31993 TGAAGCGTATTTCTGGGTTGATTTACGAAGAGACTCGTGGGGTTTTGAAGATCTTTTTGG 32052 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | || || | |||| || | || || |||||||||| | ||||| || || Sbjct 32053 AAAATGTGATTCGTGATTCTGTTACTTACACAGAGCACGCTAGGAGAAAGACGGTTACTG 32112 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || |||||| | || | ||||| | | |||| || ||||| ||| Sbjct 32113 CTATGGATGTTGTTTATGCACTTAAGAGGCAAGGAAGGACCCTTTACGGATTTGGGGGTT 32172 Query 16698 A 16698 | Sbjct 32173 A 32173 Score = 120 bits (132), Expect = 5e-23 Identities = 171/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| || ||||||||||| || ||||||||||| || | || |||||| | ||||| | Sbjct 34905 GAGACAATATCCAAGGAATTACAAAGCCAGCTATTCGAAGACTAGCTCGTAGAGGTGGTG 34964 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | ||||| ||| | || ||||||| ||||| ||| |||||||||| | Sbjct 34965 TGAAGCGTATTTCTGGGTTGATTTACGAAGAGACTCGTGGGGTTCTGAAGATCTTTTTGG 35024 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | || || | |||| | | || || |||||||||| | ||||| || || Sbjct 35025 AAAATGTGATTCGTGATTCCGTGACATACACAGAGCACGCTAGGAGAAAGACGGTTACTG 35084 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || ||||| | || | ||||| | | |||| || ||||| ||| Sbjct 35085 CTATGGATGTTGTTTATGCGCTTAAGAGGCAAGGAAGGACCCTTTACGGATTTGGGGGTT 35144 Query 16698 A 16698 | Sbjct 35145 A 35145 >seq27161 Length=29341 Score = 109 bits (120), Expect = 9e-20 Identities = 185/268 (69%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || ||||| || | | ||| || |||||||| || |||||||| ||||| || || Sbjct 12836 GCAAAACGTCACCGGAAAGTTCTCCGTGATAACATTCAGGGAATCACTAAGCCGGCGATA 12777 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | |||| | | |||||||| ||| | || |||||| |||||||||| | Sbjct 12776 AGGAGGTTGGCGAGAAGAGGTGGAGTGAAGAGAATCAGTGGATTAATCTATGAAGAAACA 12717 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | |||||||||||||| | ||| || || | |||| || | ||||| || Sbjct 12716 AGAGGCGTTTTGAAGATCTTTTTGGAGAATGTGATTCGTGATTCTGTGACTTATACTGAA 12657 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || |||| | |||||||| || | |||||| | || ||||| ||||| | ||||| Sbjct 12656 CATGCTAGGAGAAAGACTGTTACTGCTATGGATGTTGTTTATGCTTTGAAGAGACAAGGA 12597 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | ||||||| ||||| ||| || Sbjct 12596 AGGACTCTTTATGGATTTGGTGGTTGAT 12569 >seq11494 Length=37673 Score = 107 bits (118), Expect = 3e-19 Identities = 184/267 (69%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | ||||| || |||||||| |||||||||||||| ||||| Sbjct 1229 GCAAAACGTCATCGTAAGGTGCTTCGTGACAACATCCAGGGAATCACCAAGCCTGCTATT 1288 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | |||| | | |||||||| ||| | || ||| ||| | |||||||||| Sbjct 1289 AGGAGGTTGGCGAGAAGAGGTGGAGTAAAGAGAATCAGTGGGTTGATTTATGAAGAGACA 1348 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | |||| | |||||||| | ||| || || | |||| || | ||| || || Sbjct 1349 AGAGGTGTTCTTAAGATCTTTTTGGAGAATGTGATTCGTGATTCTGTTACCTACACAGAA 1408 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || |||| | |||||||| || | |||||| | || ||||| ||||| | ||||| Sbjct 1409 CATGCTAGGAGAAAGACTGTTACTGCTATGGATGTTGTTTATGCTTTGAAGAGACAAGGA 1468 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | ||||| || || ||||| Sbjct 1469 AGAACTCTCTATGGGTTCGGTGGTTAA 1495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79035893942070