Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_006882.2
Length=45176
Score E
Sequences producing significant alignments: (Bits) Value
seq11014 161 3e-35
seq20193 152 1e-32
seq31657 123 7e-24
seq25757 104 7e-18
seq24530 104 7e-18
seq8181 100 8e-17
seq15728 98.7 3e-16
seq46 98.7 3e-16
seq3149 80.6 8e-11
>seq11014
Length=29319
Score = 161 bits (178), Expect = 3e-35
Identities = 267/382 (70%), Gaps = 4/382 (1%)
Strand=Plus/Plus
Query 19308 AGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTACTA 19367
|| || || ||||| ||||| | || ||||||| || | ||||| ||| |||| |
Sbjct 10054 AGCACTGAAAACCGTCTTTACATTGGACGGTTTGGTGTTTTGATGATCCCTACCTTATTG 10113
Query 19368 GCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGC 19427
| || ||| || ||||| | ||||| || | || || || ||||| || |||||
Sbjct 10114 ACGGCWACTTCTGTATTTATTATTGCCTTCATTGTTGCTCCTCCAGTAGACATTGATGGT 10173
Query 19428 ATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCAGTA 19487
|| |||| || ||||| || || || | ||||||||||| |||||||| || || |
Sbjct 10174 ATTGGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAACATTATTTCCGGTGCCATT 10233
Query 19488 GTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCA-CTTT 19546
|||| | || || ||||| | || ||||| || |||||||||| ||||| | |
Sbjct 10234 ATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAG-CGGCATCCGT 10292
Query 19547 AGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGG 19606
||||| ||||||| |||||| ||||| ||| |||| |||| | ||||||||| | ||
Sbjct 10293 TGATGAATGGTTATTCAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGG 10352
Query 19607 AGTAGCAGCATACGCTGGTAGACAGTGGGAAC-TATCTTACAGATTAGGAATGAGACCAT 19665
||||| ||| ||| ||||||| | || ||| | | | || ||| |||| |
Sbjct 10353 CGTAGCTTGTTACATGGGTCRTGAGTGGGAGCTTAGCTT-CCGTSTRGGTATGCGACCTT 10411
Query 19666 GGATATTCGTAGCATATACAGC 19687
|||| || |||||| ||||
Sbjct 10412 GGATTGCTGTTGCATATTCAGC 10433
>seq20193
Length=7469
Score = 152 bits (168), Expect = 1e-32
Identities = 224/315 (71%), Gaps = 3/315 (1%)
Strand=Plus/Minus
Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358
||| | || || || || ||||| ||||| | || |||||||| || | ||||| ||
Sbjct 6827 TGGATAACTAGCACTGA-AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCTCT 6769
Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418
|||| | | || ||| | ||||| | ||||| || || || || || |||||
Sbjct 6768 ACCTTATTGACGGCAACTTYTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGAC 6709
Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478
|| ||||| || ||||| || ||||| || || || | |||||||||| ||||||||
Sbjct 6708 ATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTHACGGAAACAACATTATTTCC 6649
Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538
|| || | |||| | || || ||||| | || ||||| || |||||||||||
Sbjct 6648 GGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGC- 6590
Query 19539 GGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTT 19597
| || | | ||||| ||||||||||||| ||||| ||| |||| |||| | |||||
Sbjct 6589 GACATCCGTTGATGAATGGTTATACAACGRTGGTCCTTATGAACTAATTGTTCTACACTT 6530
Query 19598 CTTAATAGGAGTAGC 19612
|||| | || |||||
Sbjct 6529 CTTACTTGGCGTAGC 6515
>seq31657
Length=14304
Score = 123 bits (136), Expect = 7e-24
Identities = 104/127 (82%), Gaps = 1/127 (1%)
Strand=Plus/Plus
Query 19713 TTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTC 19771
||||| | | |||||| | || ||||| |||||| ||||||||||||||| || |||||
Sbjct 302 TTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTC 361
Query 19772 TGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTT 19831
||||||||| || || ||| | ||||||| || |||||||| ||||||||||| || ||
Sbjct 362 TGGTACTTTCAATTTCATGATTVTATTCCAGGCTGAACACAACATCCTTATGCACCCATT 421
Query 19832 CCACATG 19838
||||||
Sbjct 422 TCACATG 428
>seq25757
Length=3733
Score = 104 bits (114), Expect = 7e-18
Identities = 122/160 (76%), Gaps = 4/160 (3%)
Strand=Plus/Plus
Query 20116 CTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGA 20174
|||||||||||||||| |||||||| || || || || || |||||||| |||| |
Sbjct 3561 CTATGGCTTTCAACCTAAATGGTTTCAATTTCAATCAATCTGTAGTTGACAGTCAGAGTC 3620
Query 20175 AAGATAATCCCAACATGGGCTGATGTATTAAATA-GAGCTAACCTCGGATTTGAAGTTAT 20233
| |||| || ||| ||||| ||| | ||| | |||||||| || | ||||||||
Sbjct 3621 GTG-TAATTAACACTTGGACTGATATAT-ATATACGTGCTAACCTTGGTATGGAAGTTAT 3678
Query 20234 GCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCT 20273
||| || || ||||||||||||||||| || || |||||
Sbjct 3679 GCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCT 3718
>seq24530
Length=26533
Score = 104 bits (114), Expect = 7e-18
Identities = 201/295 (68%), Gaps = 2/295 (1%)
Strand=Plus/Minus
Query 19773 GGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTC 19832
|||||||| || || ||| | |||||||| || || ||||| ||||||||||| || ||
Sbjct 795 GGTACTTTCAATTTCATGATTGTATTCCAGGCTGAVCACAACATCCTTATGCACCCATTT 736
Query 19833 CACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGT 19892
||||| | || | ||||| ||| | || || || ||| | ||||||| |
Sbjct 735 CACATCTTAGGCCTAGCTGGTGTAAAATGCGGCTCCCTATTCAGTACTATGCATGCTTCA 676
Query 19893 TTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTAT 19952
|| || ||||| | || | ||||| || | ||| ||| || | || ||
Sbjct 675 TTTGTAACTTCTAGTTTTATAAGGGAAAGCACATAAAATGAATCTGCTAATGAAGGTTAC 616
Query 19953 AAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGA 20012
| |||| ||||| ||||| || || ||||| || || | || | || ||||| ||
Sbjct 615 AGATTCGATCAAGAGGAAGAAACTTAGAATATCGTAGCCGATCATGCTTATTTTGGCTGA 556
Query 20013 TTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTT-TCTT 20066
||||| || ||||||| | ||| || || |||| ||| ||||| |||| ||||
Sbjct 555 TTGATCTTCCAATATGATAGTTTTAACAACTCTCATTC-GTACATATCTTCTCTT 502
>seq8181
Length=32328
Score = 100 bits (110), Expect = 8e-17
Identities = 189/278 (68%), Gaps = 0/278 (0%)
Strand=Plus/Minus
Query 19773 GGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTC 19832
||||||| || || ||| | |||||| || || |||| ||||||||||| || ||
Sbjct 12081 GGTACTTCCAATTTCATGATTCTATTCCTTGCTGAGTACAACATCCTTATGCACCCATTT 12022
Query 19833 CACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGT 19892
||||| | || | ||| | ||| | || || || || | || |||||| |
Sbjct 12021 CACATCTTAGGCCTAGCTTGTGTAAAAAGCGGCTCCCTATTATGTGTTATGCATGCTTCC 11962
Query 19893 TTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTAT 19952
||||| ||||| | |||| |||||| || || ||| ||| || | || ||
Sbjct 11961 TTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 11902
Query 19953 AAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGA 20012
| || || |||| ||||| ||||| ||||| || ||||| | || ||||| | |
Sbjct 11901 AGATTTGGTTAAGAGGAAGAAACATAGAATATCGTAGCTGCTTATTCTTATTTTGGCAAA 11842
Query 20013 TTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTC 20050
|| || |||||||||||| |||||| || ||| ||||
Sbjct 11841 TTAATCTTTCAATATGCTAGTTTCAACAACTCTTGTTC 11804
>seq15728
Length=57915
Score = 98.7 bits (108), Expect = 3e-16
Identities = 149/211 (71%), Gaps = 1/211 (0%)
Strand=Plus/Plus
Query 19956 TTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTG 20015
||| | ||||| ||| | || ||||||||||| | | || || || ||||| |||||
Sbjct 13140 TTCTGTCAAGAGGAAAAAACTTATAATATTGTAGTCGTTCATGGTTATTTTGGCTGATTG 13199
Query 20016 ATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTC 20075
|| | | ||||| | ||||||| | |||||||| ||||| ||||| |||||| |||
Sbjct 13200 ATCTACCGATATGTTAGTTTCAATGACTCTCGTTCGTTACACTTCTTCCTTGCTGCTTGG 13259
Query 20076 CCCGTGGTTGGCATATGGCTTACCTC-CATGGGAATCTGCACTATGGCTTTCAACCTTAA 20134
| | || || || ||| ||||| | | || || |||| ||| |||||| || ||
Sbjct 13260 CATATAGTAGGTATCTGGTTTACCACTTTTAGGTATTAGCACAATGCTTTTCAATCTAAA 13319
Query 20135 TGGTTTTAACTTTAACCAGTCAGTAGTTGAT 20165
||| || || | ||| || ||||||||
Sbjct 13320 AAATTTCAATTTCAGCCAATCTATAGTTGAT 13350
>seq46
Length=65133
Score = 98.7 bits (108), Expect = 3e-16
Identities = 142/196 (72%), Gaps = 6/196 (3%)
Strand=Plus/Plus
Query 20052 TTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATC 20111
||||| ||||| | ||| ||| ||||| || || || ||| ||||| | | || |||
Sbjct 51961 TTACACTTCTTCCGAGCTGCTTGGCCCGTAGTAGGTATCTGGTTTACCGCTTTAGGTATC 52020
Query 20112 TGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAA 20170
|| |||||| ||||| ||| |||||||| || || ||||| || ||||||||| ||||
Sbjct 52021 AGCGCTATGGGTTTCACCCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAG 52080
Query 20171 CGGAAAGATAATCCCAACATGGGCTGAT--GTATTA--AATAGAGCTAACCTCGGATTTG 20226
| | | |||| || ||||| ||| |||| | || | |||||||| || | |
Sbjct 52081 TGTCATG-TAATTAACACTTGGGCCGATATGTATCATCAACCGTGCTAACCTTGGTATGG 52139
Query 20227 AAGTTATGCACGAGCG 20242
|||||||||| || ||
Sbjct 52140 AAGTTATGCATGAACG 52155
>seq3149
Length=150756
Score = 80.6 bits (88), Expect = 8e-11
Identities = 68/84 (81%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 19722 TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTT 19781
|||||| | || |||| |||||| ||||||||||||||| || ||||||||||||||
Sbjct 11613 TACCCAATCGGTTAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTC 11672
Query 19782 AACTTTATGTTCGTATTCCAAGCA 19805
|| | ||| | ||||||||| ||
Sbjct 11673 AATTACATGATTGTATTCCAACCA 11696
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 144367861660440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |