Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq11014 161 3e-35 seq20193 152 1e-32 seq31657 123 7e-24 seq25757 104 7e-18 seq24530 104 7e-18 seq8181 100 8e-17 seq15728 98.7 3e-16 seq46 98.7 3e-16 seq3149 80.6 8e-11 >seq11014 Length=29319 Score = 161 bits (178), Expect = 3e-35 Identities = 267/382 (70%), Gaps = 4/382 (1%) Strand=Plus/Plus Query 19308 AGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTACTA 19367 || || || ||||| ||||| | || ||||||| || | ||||| ||| |||| | Sbjct 10054 AGCACTGAAAACCGTCTTTACATTGGACGGTTTGGTGTTTTGATGATCCCTACCTTATTG 10113 Query 19368 GCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGC 19427 | || ||| || ||||| | ||||| || | || || || ||||| || ||||| Sbjct 10114 ACGGCWACTTCTGTATTTATTATTGCCTTCATTGTTGCTCCTCCAGTAGACATTGATGGT 10173 Query 19428 ATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCAGTA 19487 || |||| || ||||| || || || | ||||||||||| |||||||| || || | Sbjct 10174 ATTGGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAACATTATTTCCGGTGCCATT 10233 Query 19488 GTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCA-CTTT 19546 |||| | || || ||||| | || ||||| || |||||||||| ||||| | | Sbjct 10234 ATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAG-CGGCATCCGT 10292 Query 19547 AGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGG 19606 ||||| ||||||| |||||| ||||| ||| |||| |||| | ||||||||| | || Sbjct 10293 TGATGAATGGTTATTCAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGG 10352 Query 19607 AGTAGCAGCATACGCTGGTAGACAGTGGGAAC-TATCTTACAGATTAGGAATGAGACCAT 19665 ||||| ||| ||| ||||||| | || ||| | | | || ||| |||| | Sbjct 10353 CGTAGCTTGTTACATGGGTCRTGAGTGGGAGCTTAGCTT-CCGTSTRGGTATGCGACCTT 10411 Query 19666 GGATATTCGTAGCATATACAGC 19687 |||| || |||||| |||| Sbjct 10412 GGATTGCTGTTGCATATTCAGC 10433 >seq20193 Length=7469 Score = 152 bits (168), Expect = 1e-32 Identities = 224/315 (71%), Gaps = 3/315 (1%) Strand=Plus/Minus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| | || || || || ||||| ||||| | || |||||||| || | ||||| || Sbjct 6827 TGGATAACTAGCACTGA-AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCTCT 6769 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 |||| | | || ||| | ||||| | ||||| || || || || || ||||| Sbjct 6768 ACCTTATTGACGGCAACTTYTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGAC 6709 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || ||||| || ||||| || ||||| || || || | |||||||||| |||||||| Sbjct 6708 ATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTHACGGAAACAACATTATTTCC 6649 Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538 || || | |||| | || || ||||| | || ||||| || ||||||||||| Sbjct 6648 GGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGC- 6590 Query 19539 GGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTT 19597 | || | | ||||| ||||||||||||| ||||| ||| |||| |||| | ||||| Sbjct 6589 GACATCCGTTGATGAATGGTTATACAACGRTGGTCCTTATGAACTAATTGTTCTACACTT 6530 Query 19598 CTTAATAGGAGTAGC 19612 |||| | || ||||| Sbjct 6529 CTTACTTGGCGTAGC 6515 >seq31657 Length=14304 Score = 123 bits (136), Expect = 7e-24 Identities = 104/127 (82%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 19713 TTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTC 19771 ||||| | | |||||| | || ||||| |||||| ||||||||||||||| || ||||| Sbjct 302 TTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTC 361 Query 19772 TGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTT 19831 ||||||||| || || ||| | ||||||| || |||||||| ||||||||||| || || Sbjct 362 TGGTACTTTCAATTTCATGATTVTATTCCAGGCTGAACACAACATCCTTATGCACCCATT 421 Query 19832 CCACATG 19838 |||||| Sbjct 422 TCACATG 428 >seq25757 Length=3733 Score = 104 bits (114), Expect = 7e-18 Identities = 122/160 (76%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 20116 CTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGA 20174 |||||||||||||||| |||||||| || || || || || |||||||| |||| | Sbjct 3561 CTATGGCTTTCAACCTAAATGGTTTCAATTTCAATCAATCTGTAGTTGACAGTCAGAGTC 3620 Query 20175 AAGATAATCCCAACATGGGCTGATGTATTAAATA-GAGCTAACCTCGGATTTGAAGTTAT 20233 | |||| || ||| ||||| ||| | ||| | |||||||| || | |||||||| Sbjct 3621 GTG-TAATTAACACTTGGACTGATATAT-ATATACGTGCTAACCTTGGTATGGAAGTTAT 3678 Query 20234 GCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCT 20273 ||| || || ||||||||||||||||| || || ||||| Sbjct 3679 GCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCT 3718 >seq24530 Length=26533 Score = 104 bits (114), Expect = 7e-18 Identities = 201/295 (68%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 19773 GGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTC 19832 |||||||| || || ||| | |||||||| || || ||||| ||||||||||| || || Sbjct 795 GGTACTTTCAATTTCATGATTGTATTCCAGGCTGAVCACAACATCCTTATGCACCCATTT 736 Query 19833 CACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGT 19892 ||||| | || | ||||| ||| | || || || ||| | ||||||| | Sbjct 735 CACATCTTAGGCCTAGCTGGTGTAAAATGCGGCTCCCTATTCAGTACTATGCATGCTTCA 676 Query 19893 TTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTAT 19952 || || ||||| | || | ||||| || | ||| ||| || | || || Sbjct 675 TTTGTAACTTCTAGTTTTATAAGGGAAAGCACATAAAATGAATCTGCTAATGAAGGTTAC 616 Query 19953 AAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGA 20012 | |||| ||||| ||||| || || ||||| || || | || | || ||||| || Sbjct 615 AGATTCGATCAAGAGGAAGAAACTTAGAATATCGTAGCCGATCATGCTTATTTTGGCTGA 556 Query 20013 TTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTT-TCTT 20066 ||||| || ||||||| | ||| || || |||| ||| ||||| |||| |||| Sbjct 555 TTGATCTTCCAATATGATAGTTTTAACAACTCTCATTC-GTACATATCTTCTCTT 502 >seq8181 Length=32328 Score = 100 bits (110), Expect = 8e-17 Identities = 189/278 (68%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 19773 GGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTC 19832 ||||||| || || ||| | |||||| || || |||| ||||||||||| || || Sbjct 12081 GGTACTTCCAATTTCATGATTCTATTCCTTGCTGAGTACAACATCCTTATGCACCCATTT 12022 Query 19833 CACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGT 19892 ||||| | || | ||| | ||| | || || || || | || |||||| | Sbjct 12021 CACATCTTAGGCCTAGCTTGTGTAAAAAGCGGCTCCCTATTATGTGTTATGCATGCTTCC 11962 Query 19893 TTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTAT 19952 ||||| ||||| | |||| |||||| || || ||| ||| || | || || Sbjct 11961 TTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 11902 Query 19953 AAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGA 20012 | || || |||| ||||| ||||| ||||| || ||||| | || ||||| | | Sbjct 11901 AGATTTGGTTAAGAGGAAGAAACATAGAATATCGTAGCTGCTTATTCTTATTTTGGCAAA 11842 Query 20013 TTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTC 20050 || || |||||||||||| |||||| || ||| |||| Sbjct 11841 TTAATCTTTCAATATGCTAGTTTCAACAACTCTTGTTC 11804 >seq15728 Length=57915 Score = 98.7 bits (108), Expect = 3e-16 Identities = 149/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 19956 TTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTG 20015 ||| | ||||| ||| | || ||||||||||| | | || || || ||||| ||||| Sbjct 13140 TTCTGTCAAGAGGAAAAAACTTATAATATTGTAGTCGTTCATGGTTATTTTGGCTGATTG 13199 Query 20016 ATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTC 20075 || | | ||||| | ||||||| | |||||||| ||||| ||||| |||||| ||| Sbjct 13200 ATCTACCGATATGTTAGTTTCAATGACTCTCGTTCGTTACACTTCTTCCTTGCTGCTTGG 13259 Query 20076 CCCGTGGTTGGCATATGGCTTACCTC-CATGGGAATCTGCACTATGGCTTTCAACCTTAA 20134 | | || || || ||| ||||| | | || || |||| ||| |||||| || || Sbjct 13260 CATATAGTAGGTATCTGGTTTACCACTTTTAGGTATTAGCACAATGCTTTTCAATCTAAA 13319 Query 20135 TGGTTTTAACTTTAACCAGTCAGTAGTTGAT 20165 ||| || || | ||| || |||||||| Sbjct 13320 AAATTTCAATTTCAGCCAATCTATAGTTGAT 13350 >seq46 Length=65133 Score = 98.7 bits (108), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 20052 TTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATC 20111 ||||| ||||| | ||| ||| ||||| || || || ||| ||||| | | || ||| Sbjct 51961 TTACACTTCTTCCGAGCTGCTTGGCCCGTAGTAGGTATCTGGTTTACCGCTTTAGGTATC 52020 Query 20112 TGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAA 20170 || |||||| ||||| ||| |||||||| || || ||||| || ||||||||| |||| Sbjct 52021 AGCGCTATGGGTTTCACCCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAG 52080 Query 20171 CGGAAAGATAATCCCAACATGGGCTGAT--GTATTA--AATAGAGCTAACCTCGGATTTG 20226 | | | |||| || ||||| ||| |||| | || | |||||||| || | | Sbjct 52081 TGTCATG-TAATTAACACTTGGGCCGATATGTATCATCAACCGTGCTAACCTTGGTATGG 52139 Query 20227 AAGTTATGCACGAGCG 20242 |||||||||| || || Sbjct 52140 AAGTTATGCATGAACG 52155 >seq3149 Length=150756 Score = 80.6 bits (88), Expect = 8e-11 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 19722 TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTT 19781 |||||| | || |||| |||||| ||||||||||||||| || |||||||||||||| Sbjct 11613 TACCCAATCGGTTAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTC 11672 Query 19782 AACTTTATGTTCGTATTCCAAGCA 19805 || | ||| | ||||||||| || Sbjct 11673 AATTACATGATTGTATTCCAACCA 11696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144367861660440