Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_006883.2
Length=252401
Score E
Sequences producing significant alignments: (Bits) Value
seq11014 141 1e-28
seq20193 120 5e-22
seq46 116 6e-21
seq31657 111 3e-19
seq25757 109 9e-19
seq2712 102 1e-16
seq24530 89.7 8e-13
seq20218 86.0 1e-11
>seq11014
Length=29319
Score = 141 bits (156), Expect = 1e-28
Identities = 264/387 (68%), Gaps = 2/387 (1%)
Strand=Plus/Plus
Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668
|||| ||||||||||| | |||||||| | ||| | | | || || | |||||
Sbjct 10076 TTGGACGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACGGCWACTTCTGTATTTATT 10134
Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728
| || ||||| | || ||||| || || || || || || ||||||| || | ||
Sbjct 10135 ATTGCCTTCATTGTTGCTCCTCCAGTAGACATTGATGGTATTGGTGAACCTGTTTCAGGG 10194
Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788
|| | | || || |||||||| || || ||||| || |||| |||| || ||
Sbjct 10195 TCTCTACTTTACGGAAACAACATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATA 10254
Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848
|||||||| || || || ||||||||||| ||| | ||||||| ||| | | ||| |||
Sbjct 10255 GGTTTACATTTTTACCCAATCTGGGAAGCGGCATCCGTTGATGAATGGTTATTCAACGGT 10314
Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908
|||||||| | | | | | |||||| | | || | | ||||||||
Sbjct 10315 GGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTAGCTTGTTACATGGGTCRT 10374
Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968
||||||| ||| | |||| | |||||||| |||||||| |||||| ||||||||
Sbjct 10375 GAGTGGGAGCTTAGCTTCCGTSTRGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCT 10434
Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTC 211995
| ||| ||| ||| ||| || |||
Sbjct 10435 CTTGTTGCAGTTGCTACCGCAGTTTTC 10461
>seq20193
Length=7469
Score = 120 bits (132), Expect = 5e-22
Identities = 282/429 (66%), Gaps = 24/429 (6%)
Strand=Plus/Minus
Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668
|||| |||||||||||| | |||||| | | ||| | | | ||||| |||||
Sbjct 6797 TTGGATGGTTTGGTGTTTTGATGATCTC-TACCTTATTGACGGCAACTTYTGTATTTATT 6739
Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728
| || ||||| || || ||||| || || || || || || |||||||| || | ||
Sbjct 6738 ATTGCCTTCATTGCTGCTCCTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGG 6679
Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788
|| | | | || |||||||| || || ||||| || |||| |||| || ||
Sbjct 6678 TCTCTACTTHACGGAAACAACATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATA 6619
Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848
|||||||| || || || ||||||||||| || | ||||||| ||| | ||||| | |
Sbjct 6618 GGTTTACATTTTTACCCAATCTGGGAAGCGACATCCGTTGATGAATGGTTATACAACGRT 6559
Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908
|||||||| | | | | | |||||| | | || | | |||||||| |
Sbjct 6558 GGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTAGCTTGTTACATGGGTCGT 6499
Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGAT--CTG-------------- 211952
||||||| ||| | || | | ||||||| |||||||| |||
Sbjct 6498 GAGTGGGAGCTTAGCTTCCATCTGGGTATGCAACCTTGGATTGCTGGGTATGCAACTTTG 6439
Query 211953 ------TGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCC 212006
|||||| |||||||| ||||| |||| ||| ||| || ||| | | |||||
Sbjct 6438 GATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCTTAATCTACCC 6379
Query 212007 ATTCGGTCA 212015
| | |||||
Sbjct 6378 AATTGGTCA 6370
>seq46
Length=65133
Score = 116 bits (128), Expect = 6e-21
Identities = 145/194 (75%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 212332 TTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATC 212391
||||||||||||| || | ||||| || | || | ||||| ||| || | ||||||
Sbjct 51961 TTACACTTCTTCCGAGCTGCTTGGCCCGTAGTAGGTATCTGGTTTACCGCTTTAGGTATC 52020
Query 212392 TGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCA 212451
|| | |||| |||| ||||||||| ||||| ||||||||||| || |||||| |||
Sbjct 52021 AGCGCTATGGGTTTCACCCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT-AGTCA 52079
Query 212452 G-GTAAGGTTGTTCCTACTTGGGGTGATGT---TC-TTAACAGAGCAAACCTTGGTATGG 212506
| || | || || ||||||| ||| | || | ||| | || |||||||||||||
Sbjct 52080 GTGTCATGTAATTAACACTTGGGCCGATATGTATCATCAACCGTGCTAACCTTGGTATGG 52139
Query 212507 AAGTTATGCACGAA 212520
|||||||||| |||
Sbjct 52140 AAGTTATGCATGAA 52153
>seq31657
Length=14304
Score = 111 bits (122), Expect = 3e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 211976 CAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTA 212035
|||| ||| ||| || ||| | | |||||| ||||||| || || || || ||||
Sbjct 286 CAGCTGCTACCGCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTA 345
Query 212036 TGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACA 212095
||||| |||| || || || || ||||| |||||| | ||||||| || ||||| ||||
Sbjct 346 TGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTVTATTCCAGGCTGAACACAACA 405
Query 212096 TCCTTATGCACCCATTCCATATG 212118
|||||||||||||||| || |||
Sbjct 406 TCCTTATGCACCCATTTCACATG 428
>seq25757
Length=3733
Score = 109 bits (120), Expect = 9e-19
Identities = 128/169 (76%), Gaps = 7/169 (4%)
Strand=Plus/Plus
Query 212398 ATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCA-TCAG-GTA 212455
||||| |||||||||||||| ||||| ||||| ||||| || ||||| || |||| ||
Sbjct 3563 ATGGCTTTCAACCTAAATGGTTTCAATTTCAATCAATCTGTAGTTGA--CAGTCAGAGTC 3620
Query 212456 AGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGC 212515
|| || |||||| |||| | || | || ||||||||||||||||||||||
Sbjct 3621 GTGTAATTAACACTTGGACTGATATATATATACGTGCTAACCTTGGTATGGAAGTTATGC 3680
Query 212516 ACGAAAGAAATGCACACAACTTCCCACTTGACTTAGCATCTGCTAACGA 212564
| ||| | ||||| || |||||||| || ||| ||| |||||| |||
Sbjct 3681 ATGAACGTAATGCTCATAACTTCCCTCTAGACCTAG---CTGCTATCGA 3726
>seq2712
Length=61353
Score = 102 bits (112), Expect = 1e-16
Identities = 261/390 (67%), Gaps = 12/390 (3%)
Strand=Plus/Minus
Query 194583 GAAACCTGAGTATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTAC 194642
||| ||| | || || | || || || || || || || || ||| | ||| |||
Sbjct 13777 GAAGCCTCAATACGTCATCCTCGCAGCCGCGAAAGTCGGCGGCATACACGCAAACAATAC 13718
Query 194643 CTATCCTGCCGATTTCATCTATGACAATCTGATGATTCAGACAAATGTTATTG----ATG 194698
||||| || ||||||||| | |||||| || || || || ||||| | ||
Sbjct 13717 TTATCCAGCTGATTTCATCACTATAAATCTGCAAATCCAAACGAACGTTATCGTTTCATC 13658
Query 194699 CTGCATATCGTAATGGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTA 194758
|| || ||| || |||| |||| || |||| || ||||| || || || || ||||
Sbjct 13657 CTTCA-ATCACAA---AGTTCAGAAGCTTCTGTTCCTTGGTTCTTCATGTATTTACCCTA 13602
Query 194759 AGTTTCCAAAGATACCTATTACAGAGGAT-CAGTTACTTGCTAGTCCTTTGGAAGAATCT 194817
| ||| | ||| ||| | || || || || | || |||||||||| |
Sbjct 13601 AATTTGCTCCTCAACCAATTCCTGAAAATGCACTTT-TAACTGCTCCTTTGGAACCTACA 13543
Query 194818 AAT-AGTGCTTATGCAATTGCAAAGATAGCAGGTATGAGGATGTGTCAAGCATATCGTCA 194876
||| | || | ||||||| || || || || ||||| | ||||||||||| ||| |
Sbjct 13542 AATGAATGGT-ATGCAATAGCGAAAATTGCTGGTATTAAAATGTGTCAAGCTTATAGATT 13484
Query 194877 GCAGTATGGATTTAATGCAATATCATTAATGCCTACTAATCTATACGGACCTAATGATAA 194936
|||| || ||| ||||||| ||| ||||||||| ||| |||| || | ||||| ||
Sbjct 13483 GCAGCATAACTTTGATGCAATTTCAGCAATGCCTACGAATTTATATGGTACGAATGACAA 13424
Query 194937 TTTTGATATTAATAATGGTCATGTATTACC 194966
||| || | | ||| |||||| || ||
Sbjct 13423 TTTCCATCCTGAGAATTCTCATGTTTTGCC 13394
>seq24530
Length=26533
Score = 89.7 bits (98), Expect = 8e-13
Identities = 173/256 (68%), Gaps = 0/256 (0%)
Strand=Plus/Minus
Query 212053 GGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTC 212112
|| || ||||| |||||| | |||||||| || || || ||||||||||||||||||||
Sbjct 795 GGTACTTTCAATTTCATGATTGTATTCCAGGCTGAVCACAACATCCTTATGCACCCATTT 736
Query 212113 CATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCT 212172
|| || ||| | || ||| | | || | ||||| | ||||||| | |||
Sbjct 735 CACATCTTAGGCCTAGCTGGTGTAAAATGCGGCTCCCTATTCAGTACTATGCATGCTTCA 676
Query 212173 CTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTAC 212232
|||| || ||| |||| | |||| ||| || || || | ||||||
Sbjct 675 TTTGTAACTTCTAGTTTTATAAGGGAAAGCACATAAAATGAATCTGCTAATGAAGGTTAC 616
Query 212233 AAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGA 212292
| |||| ||||| ||||| || || || ||||| || | |||| || || || ||
Sbjct 615 AGATTCGATCAAGAGGAAGAAACTTAGAATATCGTAGCCGATCATGCTTATTTTGGCTGA 556
Query 212293 CTTATCTTCCAGTATG 212308
| |||||||| ||||
Sbjct 555 TTGATCTTCCAATATG 540
>seq20218
Length=9351
Score = 86.0 bits (94), Expect = 1e-11
Identities = 78/98 (80%), Gaps = 3/98 (3%)
Strand=Plus/Plus
Query 212467 ACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAAT 212526
||||||| |||| | | ||| | || ||||||||||||||||||||||| ||| | |||
Sbjct 2122 ACTTGGGTTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2181
Query 212527 GCACACAACTTCCCACTTGACTTAGCATCTGCTAACGA 212564
|| || |||||||| || ||| ||| |||||| |||
Sbjct 2182 GCTCATAACTTCCCTCTAGACCTAG---CTGCTATCGA 2216
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 807121240024400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |