Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq11014 141 1e-28 seq20193 120 5e-22 seq46 116 6e-21 seq31657 111 3e-19 seq25757 109 9e-19 seq2712 102 1e-16 seq24530 89.7 8e-13 seq20218 86.0 1e-11 >seq11014 Length=29319 Score = 141 bits (156), Expect = 1e-28 Identities = 264/387 (68%), Gaps = 2/387 (1%) Strand=Plus/Plus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| ||||||||||| | |||||||| | ||| | | | || || | ||||| Sbjct 10076 TTGGACGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACGGCWACTTCTGTATTTATT 10134 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 | || ||||| | || ||||| || || || || || || ||||||| || | || Sbjct 10135 ATTGCCTTCATTGTTGCTCCTCCAGTAGACATTGATGGTATTGGTGAACCTGTTTCAGGG 10194 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | || || |||||||| || || ||||| || |||| |||| || || Sbjct 10195 TCTCTACTTTACGGAAACAACATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATA 10254 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 |||||||| || || || ||||||||||| ||| | ||||||| ||| | | ||| ||| Sbjct 10255 GGTTTACATTTTTACCCAATCTGGGAAGCGGCATCCGTTGATGAATGGTTATTCAACGGT 10314 Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908 |||||||| | | | | | |||||| | | || | | |||||||| Sbjct 10315 GGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTAGCTTGTTACATGGGTCRT 10374 Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968 ||||||| ||| | |||| | |||||||| |||||||| |||||| |||||||| Sbjct 10375 GAGTGGGAGCTTAGCTTCCGTSTRGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCT 10434 Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTC 211995 | ||| ||| ||| ||| || ||| Sbjct 10435 CTTGTTGCAGTTGCTACCGCAGTTTTC 10461 >seq20193 Length=7469 Score = 120 bits (132), Expect = 5e-22 Identities = 282/429 (66%), Gaps = 24/429 (6%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| |||||||||||| | |||||| | | ||| | | | ||||| ||||| Sbjct 6797 TTGGATGGTTTGGTGTTTTGATGATCTC-TACCTTATTGACGGCAACTTYTGTATTTATT 6739 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 | || ||||| || || ||||| || || || || || || |||||||| || | || Sbjct 6738 ATTGCCTTCATTGCTGCTCCTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCAGGG 6679 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | | || |||||||| || || ||||| || |||| |||| || || Sbjct 6678 TCTCTACTTHACGGAAACAACATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATA 6619 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 |||||||| || || || ||||||||||| || | ||||||| ||| | ||||| | | Sbjct 6618 GGTTTACATTTTTACCCAATCTGGGAAGCGACATCCGTTGATGAATGGTTATACAACGRT 6559 Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908 |||||||| | | | | | |||||| | | || | | |||||||| | Sbjct 6558 GGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTAGCTTGTTACATGGGTCGT 6499 Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGAT--CTG-------------- 211952 ||||||| ||| | || | | ||||||| |||||||| ||| Sbjct 6498 GAGTGGGAGCTTAGCTTCCATCTGGGTATGCAACCTTGGATTGCTGGGTATGCAACTTTG 6439 Query 211953 ------TGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCC 212006 |||||| |||||||| ||||| |||| ||| ||| || ||| | | ||||| Sbjct 6438 GATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCAGTTTTCTTAATCTACCC 6379 Query 212007 ATTCGGTCA 212015 | | ||||| Sbjct 6378 AATTGGTCA 6370 >seq46 Length=65133 Score = 116 bits (128), Expect = 6e-21 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 212332 TTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATC 212391 ||||||||||||| || | ||||| || | || | ||||| ||| || | |||||| Sbjct 51961 TTACACTTCTTCCGAGCTGCTTGGCCCGTAGTAGGTATCTGGTTTACCGCTTTAGGTATC 52020 Query 212392 TGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCA 212451 || | |||| |||| ||||||||| ||||| ||||||||||| || |||||| ||| Sbjct 52021 AGCGCTATGGGTTTCACCCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT-AGTCA 52079 Query 212452 G-GTAAGGTTGTTCCTACTTGGGGTGATGT---TC-TTAACAGAGCAAACCTTGGTATGG 212506 | || | || || ||||||| ||| | || | ||| | || ||||||||||||| Sbjct 52080 GTGTCATGTAATTAACACTTGGGCCGATATGTATCATCAACCGTGCTAACCTTGGTATGG 52139 Query 212507 AAGTTATGCACGAA 212520 |||||||||| ||| Sbjct 52140 AAGTTATGCATGAA 52153 >seq31657 Length=14304 Score = 111 bits (122), Expect = 3e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 211976 CAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTA 212035 |||| ||| ||| || ||| | | |||||| ||||||| || || || || |||| Sbjct 286 CAGCTGCTACCGCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTA 345 Query 212036 TGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACA 212095 ||||| |||| || || || || ||||| |||||| | ||||||| || ||||| |||| Sbjct 346 TGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTVTATTCCAGGCTGAACACAACA 405 Query 212096 TCCTTATGCACCCATTCCATATG 212118 |||||||||||||||| || ||| Sbjct 406 TCCTTATGCACCCATTTCACATG 428 >seq25757 Length=3733 Score = 109 bits (120), Expect = 9e-19 Identities = 128/169 (76%), Gaps = 7/169 (4%) Strand=Plus/Plus Query 212398 ATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCA-TCAG-GTA 212455 ||||| |||||||||||||| ||||| ||||| ||||| || ||||| || |||| || Sbjct 3563 ATGGCTTTCAACCTAAATGGTTTCAATTTCAATCAATCTGTAGTTGA--CAGTCAGAGTC 3620 Query 212456 AGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGC 212515 || || |||||| |||| | || | || |||||||||||||||||||||| Sbjct 3621 GTGTAATTAACACTTGGACTGATATATATATACGTGCTAACCTTGGTATGGAAGTTATGC 3680 Query 212516 ACGAAAGAAATGCACACAACTTCCCACTTGACTTAGCATCTGCTAACGA 212564 | ||| | ||||| || |||||||| || ||| ||| |||||| ||| Sbjct 3681 ATGAACGTAATGCTCATAACTTCCCTCTAGACCTAG---CTGCTATCGA 3726 >seq2712 Length=61353 Score = 102 bits (112), Expect = 1e-16 Identities = 261/390 (67%), Gaps = 12/390 (3%) Strand=Plus/Minus Query 194583 GAAACCTGAGTATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTAC 194642 ||| ||| | || || | || || || || || || || || ||| | ||| ||| Sbjct 13777 GAAGCCTCAATACGTCATCCTCGCAGCCGCGAAAGTCGGCGGCATACACGCAAACAATAC 13718 Query 194643 CTATCCTGCCGATTTCATCTATGACAATCTGATGATTCAGACAAATGTTATTG----ATG 194698 ||||| || ||||||||| | |||||| || || || || ||||| | || Sbjct 13717 TTATCCAGCTGATTTCATCACTATAAATCTGCAAATCCAAACGAACGTTATCGTTTCATC 13658 Query 194699 CTGCATATCGTAATGGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTA 194758 || || ||| || |||| |||| || |||| || ||||| || || || || |||| Sbjct 13657 CTTCA-ATCACAA---AGTTCAGAAGCTTCTGTTCCTTGGTTCTTCATGTATTTACCCTA 13602 Query 194759 AGTTTCCAAAGATACCTATTACAGAGGAT-CAGTTACTTGCTAGTCCTTTGGAAGAATCT 194817 | ||| | ||| ||| | || || || || | || |||||||||| | Sbjct 13601 AATTTGCTCCTCAACCAATTCCTGAAAATGCACTTT-TAACTGCTCCTTTGGAACCTACA 13543 Query 194818 AAT-AGTGCTTATGCAATTGCAAAGATAGCAGGTATGAGGATGTGTCAAGCATATCGTCA 194876 ||| | || | ||||||| || || || || ||||| | ||||||||||| ||| | Sbjct 13542 AATGAATGGT-ATGCAATAGCGAAAATTGCTGGTATTAAAATGTGTCAAGCTTATAGATT 13484 Query 194877 GCAGTATGGATTTAATGCAATATCATTAATGCCTACTAATCTATACGGACCTAATGATAA 194936 |||| || ||| ||||||| ||| ||||||||| ||| |||| || | ||||| || Sbjct 13483 GCAGCATAACTTTGATGCAATTTCAGCAATGCCTACGAATTTATATGGTACGAATGACAA 13424 Query 194937 TTTTGATATTAATAATGGTCATGTATTACC 194966 ||| || | | ||| |||||| || || Sbjct 13423 TTTCCATCCTGAGAATTCTCATGTTTTGCC 13394 >seq24530 Length=26533 Score = 89.7 bits (98), Expect = 8e-13 Identities = 173/256 (68%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 212053 GGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTC 212112 || || ||||| |||||| | |||||||| || || || |||||||||||||||||||| Sbjct 795 GGTACTTTCAATTTCATGATTGTATTCCAGGCTGAVCACAACATCCTTATGCACCCATTT 736 Query 212113 CATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCT 212172 || || ||| | || ||| | | || | ||||| | ||||||| | ||| Sbjct 735 CACATCTTAGGCCTAGCTGGTGTAAAATGCGGCTCCCTATTCAGTACTATGCATGCTTCA 676 Query 212173 CTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTAC 212232 |||| || ||| |||| | |||| ||| || || || | |||||| Sbjct 675 TTTGTAACTTCTAGTTTTATAAGGGAAAGCACATAAAATGAATCTGCTAATGAAGGTTAC 616 Query 212233 AAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGA 212292 | |||| ||||| ||||| || || || ||||| || | |||| || || || || Sbjct 615 AGATTCGATCAAGAGGAAGAAACTTAGAATATCGTAGCCGATCATGCTTATTTTGGCTGA 556 Query 212293 CTTATCTTCCAGTATG 212308 | |||||||| |||| Sbjct 555 TTGATCTTCCAATATG 540 >seq20218 Length=9351 Score = 86.0 bits (94), Expect = 1e-11 Identities = 78/98 (80%), Gaps = 3/98 (3%) Strand=Plus/Plus Query 212467 ACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAAT 212526 ||||||| |||| | | ||| | || ||||||||||||||||||||||| ||| | ||| Sbjct 2122 ACTTGGGTTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2181 Query 212527 GCACACAACTTCCCACTTGACTTAGCATCTGCTAACGA 212564 || || |||||||| || ||| ||| |||||| ||| Sbjct 2182 GCTCATAACTTCCCTCTAGACCTAG---CTGCTATCGA 2216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807121240024400