Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq728 111 2e-19
>seq728
Length=46982
Score = 111 bits (122), Expect = 2e-19
Identities = 300/453 (66%), Gaps = 12/453 (3%)
Strand=Plus/Plus
Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243
||| ||||| || | |||||| || || || ||||| ||||| |||| || ||
Sbjct 1957 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAG 2016
Query 21244 TTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAA 21303
||||| ||||||||||||| | || || | || || | | |||||| | ||
Sbjct 2017 CTCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAA 2076
Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363
||||| || |||||||| ||||| |||| || ||| || || | |||||| || | ||
Sbjct 2077 CAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCTCCATTCATTCCCACCAG 2136
Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTC---AACAAT 21420
||||||||| | || || ||||||| || || || ||||||
Sbjct 2137 AGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAACAAT 2196
Query 21421 TATATTTATTA--TCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACAT 21478
| | | | |||| | || | || | || ||| | | ||||||
Sbjct 2197 TCCCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAGCA-AACTGT----AAAGCAAACAC 2251
Query 21479 GCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCG 21538
||||||||||| ||||||||||| || || ||||| ||||| || || ||||| ||
Sbjct 2252 GCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCA 2311
Query 21539 GGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC-TCCTGAAAAGAAAAT 21597
|||||||| || | ||||| ||||||||||| || || | || ||| ||||||||
Sbjct 2312 GGCATTAACCCCCGTTTTTTCAACCAAAATATCGA-ACAGAAGCTTCCGCTGAAGAAAAT 2370
Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630
|| ||||| ||||| || || || || ||
Sbjct 2371 CCCTTCAACACAGGCAAAAGCCACCAAACGCTC 2403
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531614969807600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |