Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq728 111 2e-19 >seq728 Length=46982 Score = 111 bits (122), Expect = 2e-19 Identities = 300/453 (66%), Gaps = 12/453 (3%) Strand=Plus/Plus Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 ||| ||||| || | |||||| || || || ||||| ||||| |||| || || Sbjct 1957 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAG 2016 Query 21244 TTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAA 21303 ||||| ||||||||||||| | || || | || || | | |||||| | || Sbjct 2017 CTCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAA 2076 Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 ||||| || |||||||| ||||| |||| || ||| || || | |||||| || | || Sbjct 2077 CAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCTCCATTCATTCCCACCAG 2136 Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTC---AACAAT 21420 ||||||||| | || || ||||||| || || || |||||| Sbjct 2137 AGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAACAAT 2196 Query 21421 TATATTTATTA--TCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACAT 21478 | | | | |||| | || | || | || ||| | | |||||| Sbjct 2197 TCCCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAGCA-AACTGT----AAAGCAAACAC 2251 Query 21479 GCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCG 21538 ||||||||||| ||||||||||| || || ||||| ||||| || || ||||| || Sbjct 2252 GCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCA 2311 Query 21539 GGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC-TCCTGAAAAGAAAAT 21597 |||||||| || | ||||| ||||||||||| || || | || ||| |||||||| Sbjct 2312 GGCATTAACCCCCGTTTTTTCAACCAAAATATCGA-ACAGAAGCTTCCGCTGAAGAAAAT 2370 Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630 || ||||| ||||| || || || || || Sbjct 2371 CCCTTCAACACAGGCAAAAGCCACCAAACGCTC 2403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531614969807600