Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq3956 91.5 1e-13
seq16835 86.0 6e-12
seq796 82.4 7e-11
seq545 82.4 7e-11
>seq3956
Length=148667
Score = 91.5 bits (100), Expect = 1e-13
Identities = 162/231 (70%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATT--AGAATCAA 26826
|||||| | ||||| ||||| | | |||||| | || || | || | ||| | |
Sbjct 117982 ATGCAAATCTTTGTTAAAACTCTCATTGGAAAGACCATTACTCTGGATGTGAAGAGT--A 117925
Query 26827 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886
| || |||| || | || ||| ||||||| ||||||||||| || || | ||||
Sbjct 117924 CCAACTCCATTGACAATGTTAAAGCAAAGATTGAAGACAAAGAAGGAATTCCCTCAGATC 117865
Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGAT-AGAAACGTCAGC-GACTA 26944
|||||||| | | || || || |||||| | | |||||| | | || | || || ||
Sbjct 117864 AACAAAGATTAGTATATGGTGGAAAACAATTTAAGGATGATCATACACTT--GCTGATTA 117807
Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|| |||||||| || ||||| || ||||| ||| |||| ||| | |||||
Sbjct 117806 CAATATTCAAAAGGAGTCTACAATTCATCTTGTCTTGAGTCTTTGTGGAGG 117756
>seq16835
Length=8075
Score = 86.0 bits (94), Expect = 6e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
|| ||||| | || || ||||| |||| || || |||||||| | || | || ||
Sbjct 7104 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTAGAGGTTGAGTCT 7045
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
|||||||||||| | |||||| ||||| ||||| |||||||| || || ||
Sbjct 7044 TCCGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGGATTCCCCCAGAC 6985
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945
|| || | | |||| || ||| || || || || |||| | | | | ||||||
Sbjct 6984 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACTCTTGCCGACTAC 6925
Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||||| || || || || ||| ||||||| || ||
Sbjct 6924 AACATCCAGAAGGAGTCCACTCTCCATCTCGTGCT 6890
>seq796
Length=44438
Score = 82.4 bits (90), Expect = 7e-11
Identities = 158/232 (68%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TCA 26825
||||| | ||||| ||||| | |||||||| | |||||| | || | ||| |||
Sbjct 18605 ATGCAGATATTTGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCA 18664
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
|||||||| || | || ||| ||||| ||||| ||||| || || || ||
Sbjct 18665 ---GACACCATTGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGAC 18721
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945
|| || || || || | | ||||| || || ||||||| | | | || ||| ||
Sbjct 18722 CAGCAGAGGCTGATCTTTGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTCGCCGATTAC 18781
Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997
|||||||||||||| || ||| | || |||| || | ||| | || ||||
Sbjct 18782 AACATTCAAAAAGAGTCCACTCTTCACTTGGTGCTCCGTCTTCGTGGTGGAA 18833
>seq545
Length=31085
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 26844 GTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTAC 26903
|| ||| |||||| ||||| |||||||| || || |||||||| || ||||| |
Sbjct 3628 GTGAAAGCAAAGATACAGGACAAGGAAGGGATCCCACCAGATCAACAGAGGCTCATCTTT 3687
Query 26904 GGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCT 26963
| || || || || || |||| | | | | | ||||||||||| || ||||| |||
Sbjct 3688 GCTGGTAAGCAGCTTGAGGATGGTCGCACCCTTGCAGACTATAACATCCAGAAAGAGTCT 3747
Query 26964 ACTATCCATCTGGTCCTGAGACT 26986
||| | ||||| |||||||| ||
Sbjct 3748 ACTCTTCATCTTGTCCTGAGGCT 3770
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478405178792800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |