Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq3956 91.5 1e-13 seq16835 86.0 6e-12 seq796 82.4 7e-11 seq545 82.4 7e-11 >seq3956 Length=148667 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATT--AGAATCAA 26826 |||||| | ||||| ||||| | | |||||| | || || | || | ||| | | Sbjct 117982 ATGCAAATCTTTGTTAAAACTCTCATTGGAAAGACCATTACTCTGGATGTGAAGAGT--A 117925 Query 26827 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886 | || |||| || | || ||| ||||||| ||||||||||| || || | |||| Sbjct 117924 CCAACTCCATTGACAATGTTAAAGCAAAGATTGAAGACAAAGAAGGAATTCCCTCAGATC 117865 Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGAT-AGAAACGTCAGC-GACTA 26944 |||||||| | | || || || |||||| | | |||||| | | || | || || || Sbjct 117864 AACAAAGATTAGTATATGGTGGAAAACAATTTAAGGATGATCATACACTT--GCTGATTA 117807 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || |||||||| || ||||| || ||||| ||| |||| ||| | ||||| Sbjct 117806 CAATATTCAAAAGGAGTCTACAATTCATCTTGTCTTGAGTCTTTGTGGAGG 117756 >seq16835 Length=8075 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || |||||||| | || | || || Sbjct 7104 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTAGAGGTTGAGTCT 7045 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | |||||| ||||| ||||| |||||||| || || || Sbjct 7044 TCCGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGGATTCCCCCAGAC 6985 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | | |||| || ||| || || || || |||| | | | | |||||| Sbjct 6984 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACTCTTGCCGACTAC 6925 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || ||| ||||||| || || Sbjct 6924 AACATCCAGAAGGAGTCCACTCTCCATCTCGTGCT 6890 >seq796 Length=44438 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/232 (68%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TCA 26825 ||||| | ||||| ||||| | |||||||| | |||||| | || | ||| ||| Sbjct 18605 ATGCAGATATTTGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCA 18664 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||| || | || ||| ||||| ||||| ||||| || || || || Sbjct 18665 ---GACACCATTGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGAC 18721 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || || || || | | ||||| || || ||||||| | | | || ||| || Sbjct 18722 CAGCAGAGGCTGATCTTTGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTCGCCGATTAC 18781 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||||||||||| || ||| | || |||| || | ||| | || |||| Sbjct 18782 AACATTCAAAAAGAGTCCACTCTTCACTTGGTGCTCCGTCTTCGTGGTGGAA 18833 >seq545 Length=31085 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 26844 GTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTAC 26903 || ||| |||||| ||||| |||||||| || || |||||||| || ||||| | Sbjct 3628 GTGAAAGCAAAGATACAGGACAAGGAAGGGATCCCACCAGATCAACAGAGGCTCATCTTT 3687 Query 26904 GGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCT 26963 | || || || || || |||| | | | | | ||||||||||| || ||||| ||| Sbjct 3688 GCTGGTAAGCAGCTTGAGGATGGTCGCACCCTTGCAGACTATAACATCCAGAAAGAGTCT 3747 Query 26964 ACTATCCATCTGGTCCTGAGACT 26986 ||| | ||||| |||||||| || Sbjct 3748 ACTCTTCATCTTGTCCTGAGGCT 3770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478405178792800