Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq796 104 2e-17 seq545 104 2e-17 seq572 91.5 1e-13 seq3956 89.7 4e-13 >seq796 Length=44438 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | |||||||| | || ||| | || || || | Sbjct 18605 ATGCAGATATTTGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCA 18664 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || ||| ||||| ||||| |||||||| || || || || Sbjct 18665 GACACCATTGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 18724 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | |||||||| || ||||||| | | | | || |||||| ||| Sbjct 18725 CAGAGGCTGATCTTTGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTCGCCGATTACAAC 18784 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||||||||| || || |||| || ||| Sbjct 18785 ATTCAAAAAGAGTCCACTCTTCACTTGGTG 18814 >seq545 Length=31085 Score = 104 bits (114), Expect = 2e-17 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||| | || ||||| | || || | || |||||| Sbjct 1957 ATGCAGATATTTGTTAAGACACTCACCGGAAAGACCATCACTCTTGAGGTCGAGAGTTCT 2016 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | |||||| |||||| ||||| |||||||| ||||| ||||| Sbjct 2017 GACACCATTGATAATGTCAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAG 2076 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGTCAGC-GATTATA 24168 ||||||||||| | | || || || || ||||||| | ||| || | || ||||| | Sbjct 2077 CAGAGACTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTT--GCTGATTACA 2134 Query 24169 ACATTCAAAAAGAATCTACAATTCA 24193 |||| |||||||| ||||| |||| Sbjct 2135 ACATCCAAAAAGAGTCTACCCTTCA 2159 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| | || || || | || || | || |||||| | Sbjct 2184 AATGCAAATCTTTGTTAAAACTCTGACCGGGAAGACTATAACTCTTGAGGTCGAGAGCTC 2243 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | |||||| || ||| ||||| ||||| || || || || || Sbjct 2244 AGACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCA 2303 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGTCAGC-GATTAT 24167 ||||| ||||| | | || || || || ||||||| | ||| || | || ||||| Sbjct 2304 GCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTT--GCTGATTAC 2361 Query 24168 AACATTCAAAAAGAATCTACAATTCA 24193 ||||| |||||||| ||||| |||| Sbjct 2362 AACATCCAAAAAGAGTCTACCCTTCA 2387 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||| | |||||||| | || ||| | ||||| || | Sbjct 2641 ATGCAGATCTTTGTCAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTCC 2700 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | || || || ||| ||||| ||||| || ||||| || || Sbjct 2701 GATACCATTGACAACGTGAAGGCCAAAATTCAGGACAAGGAAGGGATTCCTCCAGACCAG 2760 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||| | | |||||||||||| || |||| || | | | || || || Sbjct 2761 CAGAGACTGATCTTTGCCGGCAAGCAACTTGAGGATGGAAGGACCCTGGCTGACTACAAT 2820 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| ||||| ||||| Sbjct 2821 ATTCAGAAAGAGTCTAC 2837 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| | || || || | || || | || |||||| | Sbjct 2412 AATGCAAATCTTTGTTAAAACTCTGACCGGGAAGACTATAACTCTTGAGGTCGAGAGCTC 2471 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | |||||| || ||| ||||| ||||| || || || || || Sbjct 2472 AGACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCA 2531 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGTCAGC-GATTAT 24167 ||||| ||||| | | || || || || ||||||| | ||| || | || ||||| Sbjct 2532 GCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTT--GCTGATTAC 2589 Query 24168 AACATTCAAAAAGAATCTACAATTCA 24193 ||||| ||||| || || || |||| Sbjct 2590 AACATCCAAAAGGAGTCCACCCTTCA 2615 >seq572 Length=122185 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 || ||||||||||||||||| ||||| ||||||||||||| | || || || | ||| Sbjct 88079 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGAAAACAGTTGGAA 88020 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCA 24193 |||| |||| | || ||||| |||||||| |||||||| || |||| Sbjct 88019 GATGGGAGAACCCTCGCTGATTACAACATTCAGAAAGAATCAACTCTTCA 87970 >seq3956 Length=148667 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | | |||||| | ||||| | || || || | | Sbjct 117982 ATGCAAATCTTTGTTAAAACTCTCATTGGAAAGACCATTACTCTGGATGTGAAGAGTACC 117923 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||| || | || ||| ||||||| ||||||||||| || || | |||||| Sbjct 117922 AACTCCATTGACAATGTTAAAGCAAAGATTGAAGACAAAGAAGGAATTCCCTCAGATCAA 117863 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGA-CAGAAACGTCAGC-GATTATA 24168 || ||| | | || || || || ||| | | ||||| || | || | || ||||| | Sbjct 117862 CAAAGATTAGTATATGGTGGAAAACAATTTAAGGATGATCATACACTT--GCTGATTACA 117805 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 | |||||||| || |||||||||||| | || || || Sbjct 117804 ATATTCAAAAGGAGTCTACAATTCATCTTGTCTTGAG 117768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429710739063450