Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq796 104 2e-17
seq545 104 2e-17
seq572 91.5 1e-13
seq3956 89.7 4e-13
>seq796
Length=44438
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| ||||| | |||||||| | || ||| | || || || |
Sbjct 18605 ATGCAGATATTTGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCA 18664
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| || | || ||| ||||| ||||| |||||||| || || || ||
Sbjct 18665 GACACCATTGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 18724
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||| ||||| | | |||||||| || ||||||| | | | | || |||||| |||
Sbjct 18725 CAGAGGCTGATCTTTGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTCGCCGATTACAAC 18784
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200
||||||||||| || || |||| || |||
Sbjct 18785 ATTCAAAAAGAGTCCACTCTTCACTTGGTG 18814
>seq545
Length=31085
Score = 104 bits (114), Expect = 2e-17
Identities = 148/205 (72%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || ||| | || ||||| | || || | || ||||||
Sbjct 1957 ATGCAGATATTTGTTAAGACACTCACCGGAAAGACCATCACTCTTGAGGTCGAGAGTTCT 2016
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| || | |||||| |||||| ||||| |||||||| ||||| |||||
Sbjct 2017 GACACCATTGATAATGTCAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAG 2076
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGTCAGC-GATTATA 24168
||||||||||| | | || || || || ||||||| | ||| || | || ||||| |
Sbjct 2077 CAGAGACTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTT--GCTGATTACA 2134
Query 24169 ACATTCAAAAAGAATCTACAATTCA 24193
|||| |||||||| ||||| ||||
Sbjct 2135 ACATCCAAAAAGAGTCTACCCTTCA 2159
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/206 (71%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
||||||| | ||||| ||||| | || || || | || || | || |||||| |
Sbjct 2184 AATGCAAATCTTTGTTAAAACTCTGACCGGGAAGACTATAACTCTTGAGGTCGAGAGCTC 2243
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
||||||||||| | |||||| || ||| ||||| ||||| || || || || ||
Sbjct 2244 AGACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCA 2303
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGTCAGC-GATTAT 24167
||||| ||||| | | || || || || ||||||| | ||| || | || |||||
Sbjct 2304 GCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTT--GCTGATTAC 2361
Query 24168 AACATTCAAAAAGAATCTACAATTCA 24193
||||| |||||||| ||||| ||||
Sbjct 2362 AACATCCAAAAAGAGTCTACCCTTCA 2387
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || ||| | |||||||| | || ||| | ||||| || |
Sbjct 2641 ATGCAGATCTTTGTCAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTCC 2700
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| ||||| || | || || || ||| ||||| ||||| || ||||| || ||
Sbjct 2701 GATACCATTGACAACGTGAAGGCCAAAATTCAGGACAAGGAAGGGATTCCTCCAGACCAG 2760
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||||||||| | | |||||||||||| || |||| || | | | || || ||
Sbjct 2761 CAGAGACTGATCTTTGCCGGCAAGCAACTTGAGGATGGAAGGACCCTGGCTGACTACAAT 2820
Query 24171 ATTCAAAAAGAATCTAC 24187
||||| ||||| |||||
Sbjct 2821 ATTCAGAAAGAGTCTAC 2837
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/206 (70%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
||||||| | ||||| ||||| | || || || | || || | || |||||| |
Sbjct 2412 AATGCAAATCTTTGTTAAAACTCTGACCGGGAAGACTATAACTCTTGAGGTCGAGAGCTC 2471
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
||||||||||| | |||||| || ||| ||||| ||||| || || || || ||
Sbjct 2472 AGACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCA 2531
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGTCAGC-GATTAT 24167
||||| ||||| | | || || || || ||||||| | ||| || | || |||||
Sbjct 2532 GCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTT--GCTGATTAC 2589
Query 24168 AACATTCAAAAAGAATCTACAATTCA 24193
||||| ||||| || || || ||||
Sbjct 2590 AACATCCAAAAGGAGTCCACCCTTCA 2615
>seq572
Length=122185
Score = 91.5 bits (100), Expect = 1e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143
|| ||||||||||||||||| ||||| ||||||||||||| | || || || | |||
Sbjct 88079 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGAAAACAGTTGGAA 88020
Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCA 24193
|||| |||| | || ||||| |||||||| |||||||| || ||||
Sbjct 88019 GATGGGAGAACCCTCGCTGATTACAACATTCAGAAAGAATCAACTCTTCA 87970
>seq3956
Length=148667
Score = 89.7 bits (98), Expect = 4e-13
Identities = 152/217 (70%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| ||||| | | |||||| | ||||| | || || || | |
Sbjct 117982 ATGCAAATCTTTGTTAAAACTCTCATTGGAAAGACCATTACTCTGGATGTGAAGAGTACC 117923
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| |||| || | || ||| ||||||| ||||||||||| || || | ||||||
Sbjct 117922 AACTCCATTGACAATGTTAAAGCAAAGATTGAAGACAAAGAAGGAATTCCCTCAGATCAA 117863
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGA-CAGAAACGTCAGC-GATTATA 24168
|| ||| | | || || || || ||| | | ||||| || | || | || ||||| |
Sbjct 117862 CAAAGATTAGTATATGGTGGAAAACAATTTAAGGATGATCATACACTT--GCTGATTACA 117805
Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205
| |||||||| || |||||||||||| | || || ||
Sbjct 117804 ATATTCAAAAGGAGTCTACAATTCATCTTGTCTTGAG 117768
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429710739063450
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |