Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_007767.1
Length=132959
Score E
Sequences producing significant alignments: (Bits) Value
seq796 107 2e-18
seq572 93.3 4e-14
seq545 84.2 2e-11
>seq796
Length=44438
Score = 107 bits (118), Expect = 2e-18
Identities = 152/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||| || ||||||||||| ||||| ||||| ||||| ||| | || ||| |
Sbjct 18605 ATGCAGATATTTGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCA 18664
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| ||| |||| || ||| || || || || |||||| | ||| || ||
Sbjct 18665 GACACCATTG-ACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 18723
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||| || || || | ||||||||| || | ||||||| | ||| | |||||||| ||
Sbjct 18724 GCAGAGGCTGATCTTTGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTCGCCGATTACAA 18783
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495
||||||||||||||| ||| | || |||||
Sbjct 18784 CATTCAAAAAGAGTCCACTCTTCACTTGGTG 18814
>seq572
Length=122185
Score = 93.3 bits (102), Expect = 4e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438
|||||||||||| | || ||||||||| ||||| |||| ||| || ||||| || |||
Sbjct 88079 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGAAAACAGTTGGAA 88020
Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498
|||| | |||| | || ||||| |||||||| ||||| || ||| | || | || ||
Sbjct 88019 GATGGGAGAACCCTCGCTGATTACAACATTCAGAAAGAATCAACTCTTCACCTTGTTCTG 87960
Query 115499 AGATTGCGAGGAGGAA 115514
|| | | |||||||
Sbjct 87959 AGGCTCAGGGGAGGAA 87944
>seq545
Length=31085
Score = 84.2 bits (92), Expect = 2e-11
Identities = 140/199 (70%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CG-GAGTCCA 115343
||||| || ||||| || || ||||| ||||| ||||| || | || || |||| |
Sbjct 1957 ATGCAGATATTTGTTAAGACACTCACCGGAAAGACCATCACTCTTGAGGTCGAGAGTTCT 2016
Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403
| |||| ||| | || ||| || ||| || || |||||| | || ||||
Sbjct 2017 G--ACACCATTGATAATGTCAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCCAGATC 2074
Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463
|||| ||||| || | ||| || ||||| | ||||||| | ||| | || ||||| |
Sbjct 2075 AGCAGAGACTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACA 2134
Query 115464 ACATTCAAAAAGAGTCTAC 115482
|||| ||||||||||||||
Sbjct 2135 ACATCCAAAAAGAGTCTAC 2153
Score = 82.4 bits (90), Expect = 6e-11
Identities = 145/207 (70%), Gaps = 6/207 (3%)
Strand=Plus/Plus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343
||||| || |||||||| || || || ||||| ||||| ||| | ||| || || |
Sbjct 2641 ATGCAGATCTTTGTCAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTC- 2699
Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402
||| || ||| |||| || || |||||| || || ||||| | || ||
Sbjct 2700 -CGATACCATTG-ACAACGTGAAGGCCAAAATTCAGGACAAGGAAGGGATTCCTCCAGAC 2757
Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462
||||| ||||| || | ||| ||||| ||| | || |||| | ||| |||| || ||
Sbjct 2758 CAGCAGAGACTGATCTTTGCCGGCAAGCAACTTGAGGATGGAAGGACCCTGGCTGACTAC 2817
Query 115463 AACATTCAAAAAGAGTCTACTATACAT 115489
|| ||||| ||||||||||| |||||
Sbjct 2818 AATATTCAGAAAGAGTCTACCTTACAT 2844
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425121144998800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |