Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq796 107 2e-18 seq572 93.3 4e-14 seq545 84.2 2e-11 >seq796 Length=44438 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||||||||| ||||| ||||| ||||| ||| | || ||| | Sbjct 18605 ATGCAGATATTTGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCA 18664 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || ||| || || || || |||||| | ||| || || Sbjct 18665 GACACCATTG-ACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 18723 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || || | ||||||||| || | ||||||| | ||| | |||||||| || Sbjct 18724 GCAGAGGCTGATCTTTGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTCGCCGATTACAA 18783 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||||||||||||| ||| | || ||||| Sbjct 18784 CATTCAAAAAGAGTCCACTCTTCACTTGGTG 18814 >seq572 Length=122185 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 |||||||||||| | || ||||||||| ||||| |||| ||| || ||||| || ||| Sbjct 88079 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGAAAACAGTTGGAA 88020 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| | |||| | || ||||| |||||||| ||||| || ||| | || | || || Sbjct 88019 GATGGGAGAACCCTCGCTGATTACAACATTCAGAAAGAATCAACTCTTCACCTTGTTCTG 87960 Query 115499 AGATTGCGAGGAGGAA 115514 || | | ||||||| Sbjct 87959 AGGCTCAGGGGAGGAA 87944 >seq545 Length=31085 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CG-GAGTCCA 115343 ||||| || ||||| || || ||||| ||||| ||||| || | || || |||| | Sbjct 1957 ATGCAGATATTTGTTAAGACACTCACCGGAAAGACCATCACTCTTGAGGTCGAGAGTTCT 2016 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | |||| ||| | || ||| || ||| || || |||||| | || |||| Sbjct 2017 G--ACACCATTGATAATGTCAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCCAGATC 2074 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| ||||| || | ||| || ||||| | ||||||| | ||| | || ||||| | Sbjct 2075 AGCAGAGACTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACA 2134 Query 115464 ACATTCAAAAAGAGTCTAC 115482 |||| |||||||||||||| Sbjct 2135 ACATCCAAAAAGAGTCTAC 2153 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343 ||||| || |||||||| || || || ||||| ||||| ||| | ||| || || | Sbjct 2641 ATGCAGATCTTTGTCAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTC- 2699 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 ||| || ||| |||| || || |||||| || || ||||| | || || Sbjct 2700 -CGATACCATTG-ACAACGTGAAGGCCAAAATTCAGGACAAGGAAGGGATTCCTCCAGAC 2757 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| ||||| || | ||| ||||| ||| | || |||| | ||| |||| || || Sbjct 2758 CAGCAGAGACTGATCTTTGCCGGCAAGCAACTTGAGGATGGAAGGACCCTGGCTGACTAC 2817 Query 115463 AACATTCAAAAAGAGTCTACTATACAT 115489 || ||||| ||||||||||| ||||| Sbjct 2818 AATATTCAGAAAGAGTCTACCTTACAT 2844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425121144998800