Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq16835 113 4e-20
seq3886 113 4e-20
seq796 96.9 3e-15
seq30006 91.5 1e-13
seq558 84.2 2e-11
>seq16835
Length=8075
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| ||||| | ||| | || |||||||| || |||||||| |||
Sbjct 6875 CCACCACGGAGACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCA 6934
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || ||||| |||||||| || ||| | || |||||||||||||| || ||
Sbjct 6935 AGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGA 6994
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| ||||| ||||| ||| || |||| | || | || |||| ||||| |
Sbjct 6995 ATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACC 7054
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | || || || ||||| ||||| ||||| ||||||||
Sbjct 7055 TCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 7101
>seq3886
Length=20373
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| ||| || || | || | |||||||||||| || |||||||| |||
Sbjct 13227 CCACCACGCAGACGGAGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCA 13286
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| |||||| |||||||| || ||| |||| || | ||||||||| || ||
Sbjct 13287 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 13346
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
||||| || ||||| ||| || ||| | | || | || |||| | || |
Sbjct 13347 ATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATTATCAATGGTGTCGGAGCTTTCCACC 13406
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | ||| || ||||| || || || || |||||||||||
Sbjct 13407 TCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTCACAAAAATCTGCAT 13453
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082
||||| || || | ||||||||||||||| |||||||| || || ||||| |||
Sbjct 13014 AGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGCCAAAGTGCGGCCATCC 13073
Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142
|| ||||||||||| || | || || | ||||||||| || || || || || |||||
Sbjct 13074 TCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCT 13133
Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202
||| || ||||| | || | || |||| | ||| | || | ||| | ||||
Sbjct 13134 TGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTT 13193
Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| ||||| || || || || || || |||||
Sbjct 13194 TTCCCGGTAAGGGTCTTAACAAAGATTTGCAT 13225
>seq796
Length=44438
Score = 96.9 bits (106), Expect = 3e-15
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| ||||| || || | || || ||||| || |||||||||||
Sbjct 19287 CCACCACGAAGACGGAGCACCAAGTGAAGRGTTGATTCCTTYTGGATGTTGTAATCAGCA 19228
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| | |||||| |||||||| || || |||| || | ||||||||| || ||
Sbjct 19227 AGGGTCCTGCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGA 19168
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186
|| ||||| ||||| ||| || |||| | | | || | ||| |||| | || |
Sbjct 19167 ATGCCTTCCTTGTCCTGGATCTT-GGCTTTAACATTGTCAATAGTGTCGGAGCTTTCAAC 19109
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | ||| || ||||| | ||| || || ||||| |||||
Sbjct 19108 CTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAAATTTGCAT 19061
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| ||||| || || | ||| || ||||| || |||||||||||
Sbjct 19059 CCACCACGAAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCA 19000
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| | |||||| |||||||| || || |||| || | ||||||||| || ||
Sbjct 18999 AGGGTCCTGCCGTCCTCAAGCTGCTTTCCCGCAAAGATCAATCTCTGCTGGTCTGGGGGA 18940
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| ||||| ||||| ||| || ||| | | || | || || | | || |
Sbjct 18939 ATGCCTTCCTTGTCCTGGATCTTAGCCTTAACATTGTCAATGGTGTCAGAGCTTTCAACC 18880
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | ||| || || || | |||||| |||||||| |||||
Sbjct 18879 TCAAGGGTGATGGTCTTTCCTGTCAAAGTTTTCACGAAAATTTGCAT 18833
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| ||||| || || | || ||||| ||||||||||||||||||
Sbjct 18831 CCACCACGAAGACGGAGCACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCGGCG 18772
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || || || ||||||||||| || |||| | | ||||||||| || ||
Sbjct 18771 AGGGTACGGCCATCTTCAAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 18712
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186
|| ||||| ||||| ||| || |||| | | | || | || || | | || |
Sbjct 18711 ATGCCTTCCTTGTCCTGGATCTT-GGCTTTAACGTTGTCAATGGTGTCTGAGCTTTCCAC 18653
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | ||| || || || || ||||| || || ||||||||
Sbjct 18652 CTCAAGGGTGATGGTCTTTCCAGTGAGGGTTTTGACAAATATCTGCAT 18605
Score = 84.2 bits (92), Expect = 2e-11
Identities = 101/135 (75%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066
||||| || | |||||| || || || | ||| |||||||| || ||||||||||| |||
Sbjct 19743 CCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGCT 19684
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
|| || | || || | |||||| || || |||| || | ||||||||| || ||
Sbjct 19683 AAT-GTCCTTCCATCTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGG 19625
Query 131127 GATTCCTTCTTTGTC 131141
|| |||||||||||
Sbjct 19624 AATACCTTCTTTGTC 19610
>seq30006
Length=21699
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/193 (73%), Gaps = 5/193 (3%)
Strand=Plus/Minus
Query 131045 CCTTT-TGAATGTTGTAATC-GCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102
||||| |||||||||||||| ||| | || || || || |||||||| || ||| |
Sbjct 12894 CCTTTCTGAATGTTGTAATCAGCT-AGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAA 12836
Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCT 131161
||| || |||||||||||||| || || ||||| ||||| ||| | | || |||| |
Sbjct 12835 GATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTC-TTGAATCTTAGCTTTGACAT 12777
Query 131162 GCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTA 131221
|| | ||| ||| | || || | || | || | || || || || |||||||| |
Sbjct 12776 TGTCAATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCA 12717
Query 131222 CGAAAATCTGCAT 131234
|||| ||||||||
Sbjct 12716 CGAAGATCTGCAT 12704
>seq558
Length=67963
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066
||||| || | ||| || || | || | ||| |||||||| || |||||||| || |||
Sbjct 17092 CCACCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 17151
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| | || | ||||| |||||||| || ||| | || || ||||||||||| || ||
Sbjct 17152 AGCGTTCGGCCA-TCCTCGAGCTGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGG 17210
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|| ||||| ||||| || || ||| | | || | || || | ||||| |
Sbjct 17211 AATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTAC 17270
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||||| || || || || || || || || || ||||||||
Sbjct 17271 CTCTAAGGTAATAGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 17318
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471759152121600
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