Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq3886 105 5e-18 seq796 93.3 3e-14 >seq3886 Length=20373 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | ||||| || |||| ||||| || ||||||||||| ||||||||||| ||| Sbjct 12999 CCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGCC 13058 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | || ||||| ||| |||| | || ||| ||||| || Sbjct 13059 AAAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGA 13118 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | | |||||| | ||| Sbjct 13119 ATACCCTCCTTGTCTTGGATCTTGGC--CTTGACATTGTCAATGGTGTCGGAGCTCTCAA 13176 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||||||| ||||| || || || ||||| || ||||| Sbjct 13177 CCTCCAGGGTGATGGTTTTCCCGGTAAGGGTCTTAACAAAGATTTGCAT 13225 >seq796 Length=44438 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || |||||||| ||||| |||||||| ||||| | ||| | | || Sbjct 18816 AGCACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCGGCGAGGGTACGGCCATCT 18757 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || ||||||||| | || |||| ||| ||||| || | ||| || ||||| Sbjct 18756 TCAAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 18697 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| || || | | | | ||||| | ||| || | |||||||| Sbjct 18696 TGGATCTTGGCT--TTAACGTTGTCAATGGTGTCTGAGCTTTCCACCTCAAGGGTGATGG 18639 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||| || || ||||||||||| |||||||| Sbjct 18638 TCTTTCCAGTGAGGGTTTTGACAAATATCTGCAT 18605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404875757940100