Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq796 118 9e-22
seq16835 100 2e-16
seq545 98.7 9e-16
seq3886 89.7 4e-13
seq544 86.0 5e-12
>seq796
Length=44438
Score = 118 bits (130), Expect = 9e-22
Identities = 167/232 (72%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| ||||| || || | ||||| | || ||||| |||
Sbjct 19517 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTCT 19576
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || || || || | || |||| ||| ||||||||||| |||||||| |||
Sbjct 19577 GACACCATTGA--CAATGTTAAGGCCAAAATTCAG-GACAAAGAAGGTATTCCACCAGAC 19633
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||| || | || |||||||| || || || ||||||| | || | | |||||||
Sbjct 19634 CAGCAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTAC 19693
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
|| || || || || || || || || || || || | || |||| ||||
Sbjct 19694 AACATCCAGAAGGAGTCAACCCTTCACTTGGTCCTGCGTCTCCGAGGTGGAA 19745
Score = 113 bits (124), Expect = 4e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| || || ||||| ||||| || || | || || | || ||||| ||
Sbjct 19744 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTC 19803
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| || || | ||| | || | ||| |||||||| || || ||||| ||||
Sbjct 19804 CGACACCATTGACAACGTAAAGGCCAAGATTCAG-GACAAAGAGGGTATCCCACCAGACC 19862
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| || || | |||||||| ||||| || || ||||||| | || | | ||||||||
Sbjct 19863 AGCAAAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACA 19922
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||||||| || ||||| || || ||| | ||| | ||||| || |||||
Sbjct 19923 ATATTCAGAAGGAATCAACCCTTCATCTTGTGTTGAGGCTCAGGGGAGG 19971
Score = 107 bits (118), Expect = 2e-18
Identities = 153/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| |||||||| || || | || || || ||||||| | || ||||| ||
Sbjct 18605 ATGCAGATATTTGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCA 18664
Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| || || | | |||| || | || ||||| ||||| ||||| || |||||
Sbjct 18665 GACACCATTGACAACGTTAAAGCCAAGATCCAG-GACAAGGAAGGCATTCCCCCAGACCA 18723
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | || ||||| ||||| || | ||||||| || || | | |||||||||
Sbjct 18724 GCAGAGGCTGATCTTTGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTCGCCGATTACAA 18783
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||||||||| ||||| || || || |||||
Sbjct 18784 CATTCAAAAAGAGTCCACTCTTCACTTGGTGCT 18816
Score = 100 bits (110), Expect = 2e-16
Identities = 153/216 (71%), Gaps = 6/216 (3%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| ||||| |||||||||||||| || ||||||| | || || || ||
Sbjct 19060 AATGCAAATTTTTGTGAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTTGAAAGCTC 19119
Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|||||||| || || || |||| || ||| ||||| ||||| ||||| || ||
Sbjct 19120 CGACACTATTGA--CAATGTTAAAGC-CAAGATCCAGGACAAGGAAGGCATTCCCCCAGA 19176
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| ||| | | || |||||||| || || | || || | | || | | |||||
Sbjct 19177 CCAGCAGAGATTGATCTTTGCCGGAAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTA 19236
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||| || || || ||||| || || || || |||||
Sbjct 19237 CAACATCCARAAGGAATCAACYCTTCACTTGGTGCT 19272
>seq16835
Length=8075
Score = 100 bits (110), Expect = 2e-16
Identities = 153/215 (71%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || || | || || || | ||||| | || || ||||| ||
Sbjct 7101 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTAGAGGTTGAGTCTTCC 7042
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| ||||| || || |||| || | || ||||| ||||||||||| || |||
Sbjct 7041 GACACCATCGA--CAATGTCAAAGCCAAGATCCAG-GACAAGGAAGGGATTCCCCCAGAC 6985
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||||| | ||||| ||||| || || | || |||| ||| ||| | | ||| |||
Sbjct 6984 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACTCTTGCCGACTAC 6925
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || || ||||| || ||| | |||||
Sbjct 6924 AACATCCAGAAGGAGTCCACTCTCCATCTCGTGCT 6890
>seq545
Length=31085
Score = 98.7 bits (108), Expect = 9e-16
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | || || || ||||||| | ||||| || ||
Sbjct 2641 ATGCAGATCTTTGTCAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTCC 2700
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || || ||||| | |||| ||| ||||| ||||||||||| || |||||
Sbjct 2701 GATACCATTGACAACGTGAAGGCCAAAATTCAG-GACAAGGAAGGGATTCCTCCAGACCA 2759
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| | | || ||||||||||| ||| | || |||| | || ||| || |||||
Sbjct 2760 GCAGAGACTGATCTTTGCCGGCAAGCAACTTGAGGATGGAAGGACCCTGGCTGACTACAA 2819
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||||| ||||| || || ||||| | || ||
Sbjct 2820 TATTCAGAAAGAGTCTACCTTACATCTTGTTCT 2852
Score = 98.7 bits (108), Expect = 9e-16
Identities = 161/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||||||||| || || | || ||| | || || ||| ||
Sbjct 3097 ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTCA 3156
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| || || || || || ||||||| | ||| ||||| || || ||||| || |||
Sbjct 3157 GATACCATTGA--CAATGTGAAAGCAAAGATTCA-AGACAAGGAGGGTATTCCCCCAGAC 3213
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|||||||| | || ||||| || |||||| | || || | | ||| | | || |||
Sbjct 3214 CAACAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGAYGGGAGGACTCTTGCAGACTAC 3273
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || || || || || || || ||| | ||| | | | ||||||||
Sbjct 3274 AACATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 3323
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||||||||| ||||| ||||| || || | || || | || || ||| ||
Sbjct 2869 ATGCAAATATTTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 2928
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| || ||||| || || |||| ||| ||| ||||| || || ||||| || |||
Sbjct 2929 GATACCATCGA--CAATGTTAAAGC-AAAGATCCAAGACAAGGAGGGTATTCCTCCAGAC 2985
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||| | | || ||||| || || ||| | || |||| | || ||| ||||||
Sbjct 2986 CAGCAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACGTTGGCAGATTAC 3045
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| ||||| |||||||| || || || | || || | || ||||| ||
Sbjct 3046 AACATTCAGAAAGAATCAACCCTGCACCTTGTTCTTCGCCTTAGAGGTGG 3095
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||||||||| || || | |||||| | || || ||| ||
Sbjct 3325 ATGCAGATCTTTGTGAAGACTTTGACTGGGAAGACAATCACATTGGAGGTTGAGAGTTCA 3384
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| || || || || || ||||||| | ||| ||||| || || ||||| || |||
Sbjct 3385 GATACCATTGA--CAATGTGAAAGCAAAGATTCA-AGACAAGGAGGGTATTCCCCCAGAC 3441
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|||||||| | || ||||| || ||||| | || || | | ||| | | || |||
Sbjct 3442 CAACAGCGTTTGATCTTTGCTGGTAAACAWCTTGAGGAYGGGAGGACTCTTGCAGACTAC 3501
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || || || || || || || ||| | ||| | | | ||||||||
Sbjct 3502 AACATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 3551
>seq3886
Length=20373
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || ||| | ||||| || | ||||| | || ||||| |||
Sbjct 14137 ATGCAGATCTTCGTGAAAACTCTCACCGGAAAGACTATCACCCTAGAGGTGGAAAGTTCT 14078
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| || ||||| | ||| || ||| ||||| ||||||||||| ||||| ||
Sbjct 14077 GATACAATCGACAACGTTAAGGCTAAGATCCAGGACAAGGAAGGGATTCCCCCTGATCAG 14018
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|| || |||| || ||||| || || || || || | || ||| | | ||||| ||
Sbjct 14017 CAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAGGACGGACGGACTCTAGCTGATTATAAC 13958
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || ||||| || ||||| |||||
Sbjct 13957 ATCCAGAAGGAGTCCACCCTCCATTTGGTGCT 13926
>seq544
Length=28317
Score = 86.0 bits (94), Expect = 5e-12
Identities = 160/231 (69%), Gaps = 7/231 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||||||||| ||||| ||||| || || | || || | || || ||| ||
Sbjct 21846 ATGCAAATATTTGTTAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 21787
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGG-ATTCCACCTGA 25114
|| |||||| | || || |||| ||| ||| ||||||| |||| ||||| || |
Sbjct 21786 GATACTATCAA--CAATGTTAAAGC-AAAGATCCAAGACAAAGGAGGGTATTCCTCCAAA 21730
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| ||| | | || ||||| || | ||| | ||||||| | || ||| |||||
Sbjct 21729 CCAGCAGAGATTGATATTTGCTGGAGAGCAACTTGAAGATGGAAGGACCTTGGCAGATTA 21670
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||| ||||| ||| | || || || || | || || | || ||||| ||
Sbjct 21669 CAACATTCAGAAACAGTCAACCCTGCACCTTGTTCTTCGTCTTAGAGGCGG 21619
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433100961856850
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