Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq796 118 9e-22 seq16835 100 2e-16 seq545 98.7 9e-16 seq3886 89.7 4e-13 seq544 86.0 5e-12 >seq796 Length=44438 Score = 118 bits (130), Expect = 9e-22 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || || | ||||| | || ||||| ||| Sbjct 19517 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTCT 19576 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || | || |||| ||| ||||||||||| |||||||| ||| Sbjct 19577 GACACCATTGA--CAATGTTAAGGCCAAAATTCAG-GACAAAGAAGGTATTCCACCAGAC 19633 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || |||||||| || || || ||||||| | || | | ||||||| Sbjct 19634 CAGCAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTAC 19693 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || || || || || || || || || | || |||| |||| Sbjct 19694 AACATCCAGAAGGAGTCAACCCTTCACTTGGTCCTGCGTCTCCGAGGTGGAA 19745 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| ||||| || || | || || | || ||||| || Sbjct 19744 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTC 19803 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || | ||| | || | ||| |||||||| || || ||||| |||| Sbjct 19804 CGACACCATTGACAACGTAAAGGCCAAGATTCAG-GACAAAGAGGGTATCCCACCAGACC 19862 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || | |||||||| ||||| || || ||||||| | || | | |||||||| Sbjct 19863 AGCAAAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACA 19922 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||| || ||||| || || ||| | ||| | ||||| || ||||| Sbjct 19923 ATATTCAGAAGGAATCAACCCTTCATCTTGTGTTGAGGCTCAGGGGAGG 19971 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || || | || || || ||||||| | || ||||| || Sbjct 18605 ATGCAGATATTTGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCA 18664 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | | |||| || | || ||||| ||||| ||||| || ||||| Sbjct 18665 GACACCATTGACAACGTTAAAGCCAAGATCCAG-GACAAGGAAGGCATTCCCCCAGACCA 18723 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| ||||| || | ||||||| || || | | ||||||||| Sbjct 18724 GCAGAGGCTGATCTTTGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTCGCCGATTACAA 18783 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||||| ||||| || || || ||||| Sbjct 18784 CATTCAAAAAGAGTCCACTCTTCACTTGGTGCT 18816 Score = 100 bits (110), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| |||||||||||||| || ||||||| | || || || || Sbjct 19060 AATGCAAATTTTTGTGAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTTGAAAGCTC 19119 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| || || || |||| || ||| ||||| ||||| ||||| || || Sbjct 19120 CGACACTATTGA--CAATGTTAAAGC-CAAGATCCAGGACAAGGAAGGCATTCCCCCAGA 19176 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| | | || |||||||| || || | || || | | || | | ||||| Sbjct 19177 CCAGCAGAGATTGATCTTTGCCGGAAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTA 19236 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || ||||| || || || || ||||| Sbjct 19237 CAACATCCARAAGGAATCAACYCTTCACTTGGTGCT 19272 >seq16835 Length=8075 Score = 100 bits (110), Expect = 2e-16 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || || || | ||||| | || || ||||| || Sbjct 7101 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTAGAGGTTGAGTCTTCC 7042 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || |||| || | || ||||| ||||||||||| || ||| Sbjct 7041 GACACCATCGA--CAATGTCAAAGCCAAGATCCAG-GACAAGGAAGGGATTCCCCCAGAC 6985 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | ||||| ||||| || || | || |||| ||| ||| | | ||| ||| Sbjct 6984 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACTCTTGCCGACTAC 6925 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||||| || ||| | ||||| Sbjct 6924 AACATCCAGAAGGAGTCCACTCTCCATCTCGTGCT 6890 >seq545 Length=31085 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | ||||| || || Sbjct 2641 ATGCAGATCTTTGTCAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTCC 2700 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| | |||| ||| ||||| ||||||||||| || ||||| Sbjct 2701 GATACCATTGACAACGTGAAGGCCAAAATTCAG-GACAAGGAAGGGATTCCTCCAGACCA 2759 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || ||||||||||| ||| | || |||| | || ||| || ||||| Sbjct 2760 GCAGAGACTGATCTTTGCCGGCAAGCAACTTGAGGATGGAAGGACCCTGGCTGACTACAA 2819 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| ||||| || || ||||| | || || Sbjct 2820 TATTCAGAAAGAGTCTACCTTACATCTTGTTCT 2852 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||||||||| || || | || ||| | || || ||| || Sbjct 3097 ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTCA 3156 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || ||||||| | ||| ||||| || || ||||| || ||| Sbjct 3157 GATACCATTGA--CAATGTGAAAGCAAAGATTCA-AGACAAGGAGGGTATTCCCCCAGAC 3213 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || ||||| || |||||| | || || | | ||| | | || ||| Sbjct 3214 CAACAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGAYGGGAGGACTCTTGCAGACTAC 3273 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || || || ||| | ||| | | | |||||||| Sbjct 3274 AACATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 3323 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| ||||| || || | || || | || || ||| || Sbjct 2869 ATGCAAATATTTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 2928 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || ||||| || || |||| ||| ||| ||||| || || ||||| || ||| Sbjct 2929 GATACCATCGA--CAATGTTAAAGC-AAAGATCCAAGACAAGGAGGGTATTCCTCCAGAC 2985 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | || ||||| || || ||| | || |||| | || ||| |||||| Sbjct 2986 CAGCAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACGTTGGCAGATTAC 3045 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| |||||||| || || || | || || | || ||||| || Sbjct 3046 AACATTCAGAAAGAATCAACCCTGCACCTTGTTCTTCGCCTTAGAGGTGG 3095 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || | |||||| | || || ||| || Sbjct 3325 ATGCAGATCTTTGTGAAGACTTTGACTGGGAAGACAATCACATTGGAGGTTGAGAGTTCA 3384 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || ||||||| | ||| ||||| || || ||||| || ||| Sbjct 3385 GATACCATTGA--CAATGTGAAAGCAAAGATTCA-AGACAAGGAGGGTATTCCCCCAGAC 3441 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || ||||| || ||||| | || || | | ||| | | || ||| Sbjct 3442 CAACAGCGTTTGATCTTTGCTGGTAAACAWCTTGAGGAYGGGAGGACTCTTGCAGACTAC 3501 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || || || ||| | ||| | | | |||||||| Sbjct 3502 AACATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 3551 >seq3886 Length=20373 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || ||| | ||||| || | ||||| | || ||||| ||| Sbjct 14137 ATGCAGATCTTCGTGAAAACTCTCACCGGAAAGACTATCACCCTAGAGGTGGAAAGTTCT 14078 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| | ||| || ||| ||||| ||||||||||| ||||| || Sbjct 14077 GATACAATCGACAACGTTAAGGCTAAGATCCAGGACAAGGAAGGGATTCCCCCTGATCAG 14018 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || |||| || ||||| || || || || || | || ||| | | ||||| || Sbjct 14017 CAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAGGACGGACGGACTCTAGCTGATTATAAC 13958 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || ||||| ||||| Sbjct 13957 ATCCAGAAGGAGTCCACCCTCCATTTGGTGCT 13926 >seq544 Length=28317 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/231 (69%), Gaps = 7/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| ||||| || || | || || | || || ||| || Sbjct 21846 ATGCAAATATTTGTTAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 21787 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGG-ATTCCACCTGA 25114 || |||||| | || || |||| ||| ||| ||||||| |||| ||||| || | Sbjct 21786 GATACTATCAA--CAATGTTAAAGC-AAAGATCCAAGACAAAGGAGGGTATTCCTCCAAA 21730 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| | | || ||||| || | ||| | ||||||| | || ||| ||||| Sbjct 21729 CCAGCAGAGATTGATATTTGCTGGAGAGCAACTTGAAGATGGAAGGACCTTGGCAGATTA 21670 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| ||||| ||| | || || || || | || || | || ||||| || Sbjct 21669 CAACATTCAGAAACAGTCAACCCTGCACCTTGTTCTTCGTCTTAGAGGCGG 21619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433100961856850