Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq728 201 1e-46
seq4289 95.1 1e-14
seq4702 91.5 2e-13
seq6465 87.8 2e-12
seq10968 86.0 7e-12
seq213 86.0 7e-12
seq167 86.0 7e-12
seq24988 84.2 2e-11
seq23380 84.2 2e-11
seq4696 84.2 2e-11
seq622 84.2 2e-11
seq518 84.2 2e-11
seq14922 82.4 8e-11
seq11028 82.4 8e-11
seq6322 82.4 8e-11
>seq728
Length=46982
Score = 201 bits (222), Expect = 1e-46
Identities = 590/894 (66%), Gaps = 15/894 (2%)
Strand=Plus/Plus
Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861
||| || || ||||||||| | || ||||||||||| ||||| |||| ||| |||
Sbjct 1957 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAG 2016
Query 92862 ATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAA 92919
| || | | | |||||||| || || || ||| ||| ||| | | |||
Sbjct 2017 CTCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAA 2076
Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979
||||| ||||||||||| |||||||| | | ||||||||| | ||||||||| | ||
Sbjct 2077 CAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCTCCATTCATTCCCACCAG 2136
Query 92980 ACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGA 93038
| | ||| || ||||| || || ||| || | || || | || || ||| | |
Sbjct 2137 A-GCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAACAA 2195
Query 93039 TTTCTATTACTCTACTATTTGGTGGTTTTTGTACG-ACATAATTGTACATTAAGCACGCA 93097
|| | | |||| || | || || || | | || |||| | || ||||||
Sbjct 2196 TTCCCCTGACTCG-CTCCTCAGTTAGCTTCGTCCTTAGCAAACTGTAAAGCAAACACGCA 2254
Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157
|| || || ||||||||||||| ||| || |||||||| ||| ||||| || ||
Sbjct 2255 AAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCAGGC 2314
Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCT 93217
| | || ||||| || | ||||||||| ||| || || || || || || |||
Sbjct 2315 ATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATCCCT 2374
Query 93218 TCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCAT 93277
|| || ||||| ||||| | ||| || || || || |||| | | |||||
Sbjct 2375 TCAACACAGGCAAAAGCCACCAAACGCTCCGCGAAGGTTTCGGACCCATCG---ATCCAA 2431
Query 93278 TTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGG 93337
| ||||| | || || || | || |||||| | ||| || || || || |
Sbjct 2432 CGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATCGCACGGAACAAT 2491
Query 93338 TAATCTCGCT-CGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396
| ||| | |||| ||||| ||||| | || | | || | ||||| || ||
Sbjct 2492 TTG-CTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACATCTCGGA 2550
Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456
||||| |||||| || || |||||||| || |||||| | | | || | | ||| ||
Sbjct 2551 ATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAACCTCGGCAACCTGGAC 2610
Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516
|||| || || | |||| || || || || || || || || ||||||||
Sbjct 2611 GTCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCAGCAAAAAA 2670
Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAG 93576
|| | | ||| | || ||||| | ||| | | | || || ||||| | | ||
Sbjct 2671 GGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAGT-GACGAG 2729
Query 93577 -ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACA 93635
||| | || |||||||||||||| || ||||| || ||||| ||||| |||||||
Sbjct 2730 TATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTGTACA 2789
Query 93636 TATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACGATTAGGGTTA 93688
| ||||| || | | |||| |||||||| || || ||| || |||| ||||||
Sbjct 2790 TTTCCCAAATCTGTGGATACTGAATTGGGAACAT-ACAGAATCGATCTGGGTTA 2842
>seq4289
Length=33144
Score = 95.1 bits (104), Expect = 1e-14
Identities = 89/110 (81%), Gaps = 9/110 (8%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | |
Sbjct 24428 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 24485
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA-ATTATTATTGGAATTTTTGTT 126369
|||||||||| || ||||| ||||||| |||||| || ||||||| ||
Sbjct 24486 GCGTGGGTTCAAATCCCACTTCTGACAATATTATTTTT--AATTTTTTTT 24533
>seq4702
Length=76183
Score = 91.5 bits (100), Expect = 2e-13
Identities = 84/104 (81%), Gaps = 3/104 (3%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||||| | | ||||
Sbjct 62397 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTAAGAGAGC 62338
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT-GGAATTTT 126365
|||||||| || ||||| |||||| || || || || |||||
Sbjct 62337 GTGGGTTCAAATCCCACTTCTGACATTTTTTTTTTAGGTATTTT 62294
>seq6465
Length=54571
Score = 87.8 bits (96), Expect = 2e-12
Identities = 83/103 (81%), Gaps = 5/103 (5%)
Strand=Plus/Minus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 16808 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 16751
Query 126328 TTCGAACCCCACACCTGACAAATTATTATT--GGA-ATTTTTG 126367
||| || |||||| ||| || ||| || || ||| |||||||
Sbjct 16750 TTCAAATCCCACAGCTGTCATATTTTTTTTTGGGACATTTTTG 16708
>seq10968
Length=8915
Score = 86.0 bits (94), Expect = 7e-12
Identities = 83/105 (79%), Gaps = 9/105 (9%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || |
Sbjct 4067 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 4010
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366
||||||||| || ||||| |||||| || || || ||||||
Sbjct 4009 CGTGGGTTCAAATCCCACTTCTGACATTTTTTTTTT---ATTTTT 3968
>seq213
Length=36803
Score = 86.0 bits (94), Expect = 7e-12
Identities = 81/100 (81%), Gaps = 5/100 (5%)
Strand=Plus/Minus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||||| || |||||||
Sbjct 16105 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGTTCGAAAGG--GCGTGGG 16048
Query 126328 TTCGAACCCCACACCTGACA--AATTATTATTGGAATTTT 126365
||| || |||||| ||| || |||| || || || ||||
Sbjct 16047 TTCAAATCCCACAGCTGTCATTAATT-TTTTTCGATTTTT 16009
>seq167
Length=5554
Score = 86.0 bits (94), Expect = 7e-12
Identities = 78/97 (80%), Gaps = 6/97 (6%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | |
Sbjct 2916 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 2973
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357
|||||||||| || ||||| |||||| ||||| ||
Sbjct 2974 GCGTGGGTTCAAATCCCACTTCTGACATTTTATTTTT 3010
>seq24988
Length=35875
Score = 84.2 bits (92), Expect = 2e-11
Identities = 73/90 (81%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 33698 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 33755
Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354
|||||| || |||||| ||| ||| || ||
Sbjct 33756 GGGTTCAAATCCCACAGCTGTCAATTTTTT 33785
>seq23380
Length=41186
Score = 84.2 bits (92), Expect = 2e-11
Identities = 78/97 (80%), Gaps = 3/97 (3%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||
Sbjct 25059 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 25118
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATT-ATTATTG 126358
|||||||| || ||||| |||||| ||| ||| |||
Sbjct 25119 GTGGGTTCAAATCCCACTTCTGACACATTCATTTTTG 25155
>seq4696
Length=46777
Score = 84.2 bits (92), Expect = 2e-11
Identities = 86/109 (79%), Gaps = 5/109 (5%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||
Sbjct 37688 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 37747
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTA-TTATTGGAATTTTTGTTG 126370
|||||||| || ||||| ||||| |||| || || ||||||| |||
Sbjct 37748 GTGGGTTCAAATCCCACTTCTGAC--ATTATTTTTTTTAATTTTTTTTG 37794
>seq622
Length=45436
Score = 84.2 bits (92), Expect = 2e-11
Identities = 73/90 (81%), Gaps = 2/90 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 20718 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 20661
Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354
|||||| || |||||| ||| ||| || ||
Sbjct 20660 GGGTTCAAATCCCACAGCTGTCAATTTTTT 20631
>seq518
Length=67215
Score = 84.2 bits (92), Expect = 2e-11
Identities = 78/97 (80%), Gaps = 8/97 (8%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| ||
Sbjct 52116 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 52059
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357
|||||||||| || ||||| ||||| |||||| ||
Sbjct 52058 GCGTGGGTTCAAATCCCACTTCTGAC--ATTATTTTT 52024
>seq14922
Length=39444
Score = 82.4 bits (90), Expect = 8e-11
Identities = 83/106 (78%), Gaps = 4/106 (4%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | |||
Sbjct 27224 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGCG 27165
Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369
||||||| || ||||| ||||||| | ||||| |||||| ||
Sbjct 27164 TGGGTTCAAATCCCACTTCTGACAA--TTTTATTCTTATTTTTTTT 27121
>seq11028
Length=55451
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 2/87 (2%)
Strand=Plus/Minus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| ||||||||||||||||||| |||||||||| | |||||| || | |||||||
Sbjct 1415 CAGTTTGGCCGAGTGGTCTAAGGTGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 1358
Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354
||| || |||||| ||| |||||| ||
Sbjct 1357 TTCAAATCCCACAGCTGTCAAATTTTT 1331
>seq6322
Length=92836
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 72108 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 72165
Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354
||| || |||||| ||| ||| || ||
Sbjct 72166 TTCAAATCCCACAGCTGTCAATTTTTT 72192
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556561556927600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |