Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq728 201 1e-46 seq4289 95.1 1e-14 seq4702 91.5 2e-13 seq6465 87.8 2e-12 seq10968 86.0 7e-12 seq213 86.0 7e-12 seq167 86.0 7e-12 seq24988 84.2 2e-11 seq23380 84.2 2e-11 seq4696 84.2 2e-11 seq622 84.2 2e-11 seq518 84.2 2e-11 seq14922 82.4 8e-11 seq11028 82.4 8e-11 seq6322 82.4 8e-11 >seq728 Length=46982 Score = 201 bits (222), Expect = 1e-46 Identities = 590/894 (66%), Gaps = 15/894 (2%) Strand=Plus/Plus Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||| || || ||||||||| | || ||||||||||| ||||| |||| ||| ||| Sbjct 1957 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAG 2016 Query 92862 ATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAA 92919 | || | | | |||||||| || || || ||| ||| ||| | | ||| Sbjct 2017 CTCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAA 2076 Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979 ||||| ||||||||||| |||||||| | | ||||||||| | ||||||||| | || Sbjct 2077 CAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCTCCATTCATTCCCACCAG 2136 Query 92980 ACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGA 93038 | | ||| || ||||| || || ||| || | || || | || || ||| | | Sbjct 2137 A-GCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAACAA 2195 Query 93039 TTTCTATTACTCTACTATTTGGTGGTTTTTGTACG-ACATAATTGTACATTAAGCACGCA 93097 || | | |||| || | || || || | | || |||| | || |||||| Sbjct 2196 TTCCCCTGACTCG-CTCCTCAGTTAGCTTCGTCCTTAGCAAACTGTAAAGCAAACACGCA 2254 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157 || || || ||||||||||||| ||| || |||||||| ||| ||||| || || Sbjct 2255 AAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCAGGC 2314 Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCT 93217 | | || ||||| || | ||||||||| ||| || || || || || || ||| Sbjct 2315 ATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATCCCT 2374 Query 93218 TCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCAT 93277 || || ||||| ||||| | ||| || || || || |||| | | ||||| Sbjct 2375 TCAACACAGGCAAAAGCCACCAAACGCTCCGCGAAGGTTTCGGACCCATCG---ATCCAA 2431 Query 93278 TTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGG 93337 | ||||| | || || || | || |||||| | ||| || || || || | Sbjct 2432 CGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATCGCACGGAACAAT 2491 Query 93338 TAATCTCGCT-CGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | ||| | |||| ||||| ||||| | || | | || | ||||| || || Sbjct 2492 TTG-CTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACATCTCGGA 2550 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 ||||| |||||| || || |||||||| || |||||| | | | || | | ||| || Sbjct 2551 ATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAACCTCGGCAACCTGGAC 2610 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 |||| || || | |||| || || || || || || || || |||||||| Sbjct 2611 GTCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCAGCAAAAAA 2670 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAG 93576 || | | ||| | || ||||| | ||| | | | || || ||||| | | || Sbjct 2671 GGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAGT-GACGAG 2729 Query 93577 -ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACA 93635 ||| | || |||||||||||||| || ||||| || ||||| ||||| ||||||| Sbjct 2730 TATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTGTACA 2789 Query 93636 TATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACGATTAGGGTTA 93688 | ||||| || | | |||| |||||||| || || ||| || |||| |||||| Sbjct 2790 TTTCCCAAATCTGTGGATACTGAATTGGGAACAT-ACAGAATCGATCTGGGTTA 2842 >seq4289 Length=33144 Score = 95.1 bits (104), Expect = 1e-14 Identities = 89/110 (81%), Gaps = 9/110 (8%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 24428 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 24485 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA-ATTATTATTGGAATTTTTGTT 126369 |||||||||| || ||||| ||||||| |||||| || ||||||| || Sbjct 24486 GCGTGGGTTCAAATCCCACTTCTGACAATATTATTTTT--AATTTTTTTT 24533 >seq4702 Length=76183 Score = 91.5 bits (100), Expect = 2e-13 Identities = 84/104 (81%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||||| | | |||| Sbjct 62397 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTAAGAGAGC 62338 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT-GGAATTTT 126365 |||||||| || ||||| |||||| || || || || ||||| Sbjct 62337 GTGGGTTCAAATCCCACTTCTGACATTTTTTTTTTAGGTATTTT 62294 >seq6465 Length=54571 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/103 (81%), Gaps = 5/103 (5%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 16808 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 16751 Query 126328 TTCGAACCCCACACCTGACAAATTATTATT--GGA-ATTTTTG 126367 ||| || |||||| ||| || ||| || || ||| ||||||| Sbjct 16750 TTCAAATCCCACAGCTGTCATATTTTTTTTTGGGACATTTTTG 16708 >seq10968 Length=8915 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/105 (79%), Gaps = 9/105 (9%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 4067 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 4010 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 ||||||||| || ||||| |||||| || || || |||||| Sbjct 4009 CGTGGGTTCAAATCCCACTTCTGACATTTTTTTTTT---ATTTTT 3968 >seq213 Length=36803 Score = 86.0 bits (94), Expect = 7e-12 Identities = 81/100 (81%), Gaps = 5/100 (5%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||||| || ||||||| Sbjct 16105 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGTTCGAAAGG--GCGTGGG 16048 Query 126328 TTCGAACCCCACACCTGACA--AATTATTATTGGAATTTT 126365 ||| || |||||| ||| || |||| || || || |||| Sbjct 16047 TTCAAATCCCACAGCTGTCATTAATT-TTTTTCGATTTTT 16009 >seq167 Length=5554 Score = 86.0 bits (94), Expect = 7e-12 Identities = 78/97 (80%), Gaps = 6/97 (6%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 2916 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 2973 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||| || ||||| |||||| ||||| || Sbjct 2974 GCGTGGGTTCAAATCCCACTTCTGACATTTTATTTTT 3010 >seq24988 Length=35875 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 33698 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 33755 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| ||| || || Sbjct 33756 GGGTTCAAATCCCACAGCTGTCAATTTTTT 33785 >seq23380 Length=41186 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/97 (80%), Gaps = 3/97 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 25059 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 25118 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATT-ATTATTG 126358 |||||||| || ||||| |||||| ||| ||| ||| Sbjct 25119 GTGGGTTCAAATCCCACTTCTGACACATTCATTTTTG 25155 >seq4696 Length=46777 Score = 84.2 bits (92), Expect = 2e-11 Identities = 86/109 (79%), Gaps = 5/109 (5%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 37688 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 37747 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTA-TTATTGGAATTTTTGTTG 126370 |||||||| || ||||| ||||| |||| || || ||||||| ||| Sbjct 37748 GTGGGTTCAAATCCCACTTCTGAC--ATTATTTTTTTTAATTTTTTTTG 37794 >seq622 Length=45436 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 20718 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 20661 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| ||| || || Sbjct 20660 GGGTTCAAATCCCACAGCTGTCAATTTTTT 20631 >seq518 Length=67215 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/97 (80%), Gaps = 8/97 (8%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 52116 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 52059 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||| || ||||| ||||| |||||| || Sbjct 52058 GCGTGGGTTCAAATCCCACTTCTGAC--ATTATTTTT 52024 >seq14922 Length=39444 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/106 (78%), Gaps = 4/106 (4%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 27224 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGCG 27165 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||||||| || ||||| ||||||| | ||||| |||||| || Sbjct 27164 TGGGTTCAAATCCCACTTCTGACAA--TTTTATTCTTATTTTTTTT 27121 >seq11028 Length=55451 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| ||||||||||||||||||| |||||||||| | |||||| || | ||||||| Sbjct 1415 CAGTTTGGCCGAGTGGTCTAAGGTGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 1358 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| |||||| || Sbjct 1357 TTCAAATCCCACAGCTGTCAAATTTTT 1331 >seq6322 Length=92836 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 72108 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 72165 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| ||| || || Sbjct 72166 TTCAAATCCCACAGCTGTCAATTTTTT 72192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556561556927600