Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_008520.2
Length=132239
Score E
Sequences producing significant alignments: (Bits) Value
seq3956 93.3 4e-14
seq796 86.0 5e-12
>seq3956
Length=148667
Score = 93.3 bits (102), Expect = 4e-14
Identities = 155/224 (69%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 111181 TTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAA 111240
||| | |||||||| ||||| ||||| | | || || |||||||| |||| | |
Sbjct 117988 TTACAGATGCAAATCTTTGTTAAAACTCTCATTGGAAAGACCATTACTCTGGATGTGAAG 117929
Query 111241 CCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC 111300
| | | || ||| | | || ||| ||| |||| ||||||||||| |||||
Sbjct 117928 AGTACCAACTCCATTGACAATGTTAAAGCAAAGATTGAAGACAAAGAAGGAATTCCCTCA 117869
Query 111301 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 111360
||||||||||| | | |||| || |||||||| | ||| | | || | || |||
Sbjct 117868 GATCAACAAAGATTAGTATATGGTGGAAAACAATTTAAGGATGATCATACACTTGCTGAT 117809
Query 111361 TATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCT 111404
|| ||||| ||||| || |||||| | ||| | || ||| ||||
Sbjct 117808 TACAATATTCAAAAGGAGTCTACAATTCATCTTGTCTTGAGTCT 117765
>seq796
Length=44438
Score = 86.0 bits (94), Expect = 5e-12
Identities = 160/235 (68%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 111179 GTTTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGG 111238
|| || | ||||| || ||||||||||| | || || || ||||| ||| | || ||
Sbjct 18597 GTGTACAGATGCAGATATTTGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGG 18656
Query 111239 AACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCG 111298
|| | || | ||| | | || ||| || || ||||| |||||| |||||
Sbjct 18657 AAAGCTCAGACACCATTGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCC 18716
Query 111299 TCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCG 111358
|| || || ||||| || | ||||||||| || | |||||| || | ||||
Sbjct 18717 CAGACCAGCAGAGGCTGATCTTTGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTCGCCG 18776
Query 111359 ATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413
|||| || || |||||||| || || || || || ||| | ||||| || |||||
Sbjct 18777 ATTACAACATTCAAAAAGAGTCCACTCTTCACTTGGTGCTCCGTCTTCGTGGTGG 18831
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422818352158000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |