Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq3956 93.3 4e-14 seq796 86.0 5e-12 >seq3956 Length=148667 Score = 93.3 bits (102), Expect = 4e-14 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 111181 TTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAA 111240 ||| | |||||||| ||||| ||||| | | || || |||||||| |||| | | Sbjct 117988 TTACAGATGCAAATCTTTGTTAAAACTCTCATTGGAAAGACCATTACTCTGGATGTGAAG 117929 Query 111241 CCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC 111300 | | | || ||| | | || ||| ||| |||| ||||||||||| ||||| Sbjct 117928 AGTACCAACTCCATTGACAATGTTAAAGCAAAGATTGAAGACAAAGAAGGAATTCCCTCA 117869 Query 111301 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 111360 ||||||||||| | | |||| || |||||||| | ||| | | || | || ||| Sbjct 117868 GATCAACAAAGATTAGTATATGGTGGAAAACAATTTAAGGATGATCATACACTTGCTGAT 117809 Query 111361 TATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCT 111404 || ||||| ||||| || |||||| | ||| | || ||| |||| Sbjct 117808 TACAATATTCAAAAGGAGTCTACAATTCATCTTGTCTTGAGTCT 117765 >seq796 Length=44438 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 111179 GTTTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGG 111238 || || | ||||| || ||||||||||| | || || || ||||| ||| | || || Sbjct 18597 GTGTACAGATGCAGATATTTGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGG 18656 Query 111239 AACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCG 111298 || | || | ||| | | || ||| || || ||||| |||||| ||||| Sbjct 18657 AAAGCTCAGACACCATTGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCC 18716 Query 111299 TCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCG 111358 || || || ||||| || | ||||||||| || | |||||| || | |||| Sbjct 18717 CAGACCAGCAGAGGCTGATCTTTGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTCGCCG 18776 Query 111359 ATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||| || || |||||||| || || || || || ||| | ||||| || ||||| Sbjct 18777 ATTACAACATTCAAAAAGAGTCCACTCTTCACTTGGTGCTCCGTCTTCGTGGTGG 18831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422818352158000