Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq1907 93.3 9e-14
seq23814 91.5 3e-13
seq10518 89.7 1e-12
seq4288 89.7 1e-12
seq3179 89.7 1e-12
seq24765 87.8 4e-12
seq21155 87.8 4e-12
seq11694 87.8 4e-12
seq5902 87.8 4e-12
seq5738 87.8 4e-12
seq4549 87.8 4e-12
seq3217 87.8 4e-12
seq3212 87.8 4e-12
seq2897 87.8 4e-12
seq1289 87.8 4e-12
seq1189 87.8 4e-12
seq730 86.0 1e-11
seq11682 84.2 4e-11
seq11493 84.2 4e-11
seq9213 84.2 4e-11
>seq1907
Length=59525
Score = 93.3 bits (102), Expect = 9e-14
Identities = 132/184 (72%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 218626 GCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCC 218685
||||| ||| |||| | ||| | ||| || || | || |||||||||||||| ||
Sbjct 43830 GCATTTAAGAGGAATTTTGTTAAGGAAGCAAAAGTTTCCCAATTTTCTGGTTATGTCTCT 43771
Query 218686 GAAATTTCTGGCTACCATCACGGTGAGCAGAGTCT--GCAGGGTGCCATTGTAGGCATGG 218743
|| || | || ||||| |||||||||||||| |||| |||| | |||||||
Sbjct 43770 GAGCACTCAGCTTATCATCATGGTGAGCAGAGTCTTAGCAGCA--CCATCATTGGCATGG 43713
Query 218744 CACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTT 218803
|||| |||||||| ||||| || || | || | ||| || || |||||||||||
Sbjct 43712 CACAAGACTATGTTGGCAGCAATAATGTAAATCTATTGCAACCAAATGGTCAGTTTGGCA 43653
Query 218804 CTCG 218807
||||
Sbjct 43652 CTCG 43649
>seq23814
Length=25482
Score = 91.5 bits (100), Expect = 3e-13
Identities = 61/68 (90%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||
Sbjct 3532 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 3591
Query 142561 AGCCCCAC 142568
||||||||
Sbjct 3592 AGCCCCAC 3599
>seq10518
Length=16916
Score = 89.7 bits (98), Expect = 1e-12
Identities = 60/67 (90%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||
Sbjct 6616 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 6675
Query 142562 GCCCCAC 142568
|||||||
Sbjct 6676 GCCCCAC 6682
>seq4288
Length=26724
Score = 89.7 bits (98), Expect = 1e-12
Identities = 60/67 (90%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||
Sbjct 16252 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 16311
Query 142562 GCCCCAC 142568
|||||||
Sbjct 16312 GCCCCAC 16318
>seq3179
Length=15064
Score = 89.7 bits (98), Expect = 1e-12
Identities = 60/67 (90%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||
Sbjct 348 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 289
Query 142562 GCCCCAC 142568
|||||||
Sbjct 288 GCCCCAC 282
>seq24765
Length=14368
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 9045 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 8986
Query 142563 CCCCAC 142568
||||||
Sbjct 8985 CCCCAC 8980
>seq21155
Length=35007
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 2820 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2879
Query 142563 CCCCAC 142568
||||||
Sbjct 2880 CCCCAC 2885
>seq11694
Length=37099
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 5167 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5108
Query 142563 CCCCAC 142568
||||||
Sbjct 5107 CCCCAC 5102
>seq5902
Length=37122
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 6088 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 6029
Query 142563 CCCCAC 142568
||||||
Sbjct 6028 CCCCAC 6023
>seq5738
Length=32166
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 10978 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 11037
Query 142563 CCCCAC 142568
||||||
Sbjct 11038 CCCCAC 11043
>seq4549
Length=49622
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 16727 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 16668
Query 142563 CCCCAC 142568
||||||
Sbjct 16667 CCCCAC 16662
>seq3217
Length=28472
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 17741 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 17682
Query 142563 CCCCAC 142568
||||||
Sbjct 17681 CCCCAC 17676
>seq3212
Length=13643
Score = 87.8 bits (96), Expect = 4e-12
Identities = 60/68 (88%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|| ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||
Sbjct 13313 ATTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 13254
Query 142561 AGCCCCAC 142568
||||||||
Sbjct 13253 AGCCCCAC 13246
>seq2897
Length=74306
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 22535 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 22594
Query 142563 CCCCAC 142568
||||||
Sbjct 22595 CCCCAC 22600
>seq1289
Length=58079
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 48929 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 48870
Query 142563 CCCCAC 142568
||||||
Sbjct 48869 CCCCAC 48864
>seq1189
Length=15210
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 560 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 501
Query 142563 CCCCAC 142568
||||||
Sbjct 500 CCCCAC 495
>seq730
Length=67974
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||
Sbjct 28864 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 28923
Query 142564 CCCAC 142568
|||||
Sbjct 28924 CCCAC 28928
>seq11682
Length=23603
Score = 84.2 bits (92), Expect = 4e-11
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||| ||
Sbjct 980 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCAAG 921
Query 142563 CCCCAC 142568
||||||
Sbjct 920 CCCCAC 915
>seq11493
Length=26591
Score = 84.2 bits (92), Expect = 4e-11
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||| ||
Sbjct 24443 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCAAG 24502
Query 142563 CCCCAC 142568
||||||
Sbjct 24503 CCCCAC 24508
>seq9213
Length=20469
Score = 84.2 bits (92), Expect = 4e-11
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| | |||||||||||||||||
Sbjct 19299 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACTTTGTGGTCGTGGGTTCGAG 19358
Query 142563 CCCCAC 142568
||||||
Sbjct 19359 CCCCAC 19364
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027270657854590
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |