Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq30006 116 3e-21
seq796 113 4e-20
seq545 111 1e-19
seq3956 91.5 1e-13
seq558 89.7 4e-13
seq544 84.2 2e-11
seq3886 82.4 6e-11
>seq30006
Length=21699
Score = 116 bits (128), Expect = 3e-21
Identities = 142/191 (74%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 114193 CTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251
|||| |||||||||||||| ||| | |||||| |||||| || || || || ||| ||
Sbjct 12893 CTTTCTGAATGTTGTAATCAGCT-AGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAG 12835
Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311
|| | ||||| |||||||| ||||| ||||| ||||| |||||| ||| | |
Sbjct 12834 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTG 12775
Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371
|||| |||||| | ||||| || || | || | ||| || || || |||||||| ||
Sbjct 12774 TCAATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 12715
Query 114372 AAAATCTGCAT 114382
|| ||||||||
Sbjct 12714 AAGATCTGCAT 12704
>seq796
Length=44438
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || | | || || || | || || |||||||||||||||||||||
Sbjct 18834 ATTCCACCACGAAGACGGAGCACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCG 18775
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||||| ||||||||| || || || || |||| || | ||| ||||| ||
Sbjct 18774 GCGAGGGTACGGCCATCTTCAAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGGG 18715
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||||||||| ||||| ||||| ||| | | |||| |||||| | | |||
Sbjct 18714 GGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTGTCAATGGTGTCTGAGCTTTCC 18655
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | ||| | || || || || || ||||| ||||| ||||||||
Sbjct 18654 ACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTTTTGACAAATATCTGCAT 18605
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || | | || || || | || ||||| || || |||||||||||
Sbjct 19290 ATTCCACCACGAAGACGGAGCACCAAGTGAAGRGTTGATTCCTTYTGGATGTTGTAATCA 19231
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || | || ||||| || || || || |||| | | ||| ||||| ||
Sbjct 19230 GCAAGGGTCCTGCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGG 19171
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||||||||| ||||| ||||| ||| | | |||| ||||||| | |||
Sbjct 19170 GGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACATTGTCAATAGTGTCGGAGCTTTCA 19111
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | ||| | || || ||||||| ||| || |||||||| |||||
Sbjct 19110 ACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAAATTTGCAT 19061
Score = 82.4 bits (90), Expect = 6e-11
Identities = 158/233 (68%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 114150 CAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAA 114209
|||| ||| ||||| || | | || | || | ||||| || ||||| ||||||||
Sbjct 20205 CAAAAACCACCACGGAGACGGAGGACAAGGTGCAAAGTAGACTCCTTTTGGATGTTGTAG 20146
Query 114210 TCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCC 114269
|| || ||| | ||||||||| || || || || |||| || | ||| ||||||
Sbjct 20145 TCCGCCAGAGTCCTTCCATCTTCAAGCTGCTTCCCTGCAAAGATCAGTCTCTGCTGGTCC 20086
Query 114270 GGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGAT 114329
|| || || || || ||||| |||||| || | | |||| ||| || |
Sbjct 20085 GGTGGGATTCCCTCCTTGTCCTGAATCTTAGCCTTCACATTGTCAATGGTATCAGAACTC 20026
Query 114330 TCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || |||| || | ||||| || |||| || || ||||||||||||||
Sbjct 20025 TCCACCTCCAAAGTTATGGTTTTCCCAGTCAAGGTCTTCACAAAAATCTGCAT 19973
>seq545
Length=31085
Score = 111 bits (122), Expect = 1e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || |||||||| | | || | || | ||||| |||||||| |||||||||||
Sbjct 2186 ATTCCACCACGTAGACGGAGGACAAGRTGAAGGGTAGACTCTTTTTGGATGTTGTAATCA 2127
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || || ||||||||| ||||| ||||| |||| || | ||| || || |||
Sbjct 2126 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGA 2067
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||||||||| ||||| |||||| ||| | | |||| |||||| | |||
Sbjct 2066 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCG 2007
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | || || ||||| || || || ||||| ||||||||
Sbjct 2006 ACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 1957
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || |||||||| | | || | || | ||||| |||||||| |||||||||||
Sbjct 2414 ATTCCACCACGTAGACGGAGGACAAGGTGAAGGGTAGACTCTTTTTGGATGTTGTAATCA 2355
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || || ||||||||| ||||| ||||| |||| || | ||| ||||| ||
Sbjct 2354 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGG 2295
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| ||||| ||||| ||| || ||| | | || | |||||| | | |||
Sbjct 2294 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCG 2235
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | || || |||||||||||||| ||||| || |||||
Sbjct 2234 ACCTCAAGAGTTATAGTCTTCCCGGTCAGAGTTTTAACAAAGATTTGCAT 2185
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || | || | || || || ||||| |||||||||||
Sbjct 2642 ATACCACCACGAAGGCGAAGGACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCA 2583
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || || ||||||||| ||||| ||||| |||| || | ||| ||||| ||
Sbjct 2582 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGG 2523
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| ||||| ||||| ||| || ||| | | || | |||||| | | |||
Sbjct 2522 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCG 2463
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | || || |||||||||||||| ||||| || |||||
Sbjct 2462 ACCTCAAGAGTTATAGTCTTCCCGGTCAGAGTTTTAACAAAGATTTGCAT 2413
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229
||| || | ||| | || || || || || |||||||| || | ||| | ||
Sbjct 3309 CAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCCRTC 3250
Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289
||||||||||||||||| |||| | |||||||||||| || ||||| || || |||||
Sbjct 3249 CTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTGTC 3190
Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349
||||||| ||| | | |||| ||| || | || || |||| || | ||
Sbjct 3189 TTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGTAATTGT 3130
Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| || |||| ||| || |||||||| ||||||
Sbjct 3129 CTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 3096
Score = 91.5 bits (100), Expect = 1e-13
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229
||| || | ||| | || || || || || |||||||| || | ||| | ||
Sbjct 3537 CAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCCRTC 3478
Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289
||||| ||||||||||| |||| | |||||||||||| || ||||| || || |||||
Sbjct 3477 CTCAAGWTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTGTC 3418
Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349
||||||| ||| | | |||| ||| || | || || |||| || | ||
Sbjct 3417 TTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGTGATTGT 3358
Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || |||| ||| || ||||| ||||||||
Sbjct 3357 CTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 3325
>seq3956
Length=148667
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| |||| || ||||| || | ||| || ||||| || |||||||| ||||||||
Sbjct 117755 ACCTCCACAAAGACTCAAGACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAGC 117814
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
| ||| || ||| | || |||||| ||| | || | | | ||||| || | ||
Sbjct 117815 AAGTGTATGATCATCCTTAAATTGTTTTCCACCATATACTAATCTTTGTTGATCTGAGGG 117874
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||||||||| |||||||| ||| | | |||| || || ||| | ||
Sbjct 117875 AATTCCTTCTTTGTCTTCAATCTTTGCTTTAACATTGTCAATGGAGTTGGTACTCTTCAC 117934
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|||| || | || || || | |||||||| ||||| || |||||
Sbjct 117935 ATCCAGAGTAATGGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCAT 117982
>seq558
Length=67963
Score = 89.7 bits (98), Expect = 4e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244
|| || || || || |||||||| || ||| | || || ||| || || || |||||
Sbjct 17122 GTGGACTCCTTCTGGATGTTGTAGTCAGCT-AGCGTTCGGCCATCCTCGAGCTGCTTACC 17180
Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304
||| | || | ||||| ||||| || ||||||||||| ||||| |||||| ||
Sbjct 17181 GGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTT 17240
Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364
| | |||| |||||| | || || || || | ||| | || ||||| ||||| ||
Sbjct 17241 AACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGT 17300
Query 114365 TTTTACAAAAATCTGCAT 114382
|| ||||| ||||||||
Sbjct 17301 CTTCACAAAGATCTGCAT 17318
>seq544
Length=28317
Score = 84.2 bits (92), Expect = 2e-11
Identities = 159/232 (69%), Gaps = 3/232 (1%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || |||||||| | | || | ||| | ||||| || | ||| |||||||||||
Sbjct 22216 ATTCCACCACGTAGACGGAGGACAAGATGGAG-GTAGACTCGTCTTGGATGTTGTAATCA 22274
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || | ||||||||| ||||| ||||| |||| | | | | || || |||
Sbjct 22275 GCAATTGTTTGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAACCTCCGCTGATCTGGA 22334
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||||||||| ||||| |||||| ||||| | |||| ||||| | | |||
Sbjct 22335 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTTACATTATCAATAGTGTCAGAGCTCTCG 22394
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTT--TACAAAAATCTGCAT 114382
|| || | || | || || ||| | || || || ||||| ||||||||
Sbjct 22395 ACCTCAAGAGTGATGGTCTTTCCGATGAGCGTCTTAAAACAAATATCTGCAT 22446
>seq3886
Length=20373
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || | || | || || || || || |||||||| |||
Sbjct 13224 ATACCACCACGCAGACGGAGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG 13283
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || || || || || || ||||||||| |||| | | ||| ||||| ||
Sbjct 13284 GCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGG 13343
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| || || ||||| ||||| || | | |||| |||||||| | |||
Sbjct 13344 GGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATTATCAATGGTGTCGGAGCTTTCC 13403
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | || || ||||| || || || ||||||||||||||
Sbjct 13404 ACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTCACAAAAATCTGCAT 13453
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419914274519880
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