Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq30006 116 3e-21 seq796 113 4e-20 seq545 111 1e-19 seq3956 91.5 1e-13 seq558 89.7 4e-13 seq544 84.2 2e-11 seq3886 82.4 6e-11 >seq30006 Length=21699 Score = 116 bits (128), Expect = 3e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 114193 CTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 |||| |||||||||||||| ||| | |||||| |||||| || || || || ||| || Sbjct 12893 CTTTCTGAATGTTGTAATCAGCT-AGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAG 12835 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || | ||||| |||||||| ||||| ||||| ||||| |||||| ||| | | Sbjct 12834 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTG 12775 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 |||| |||||| | ||||| || || | || | ||| || || || |||||||| || Sbjct 12774 TCAATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 12715 Query 114372 AAAATCTGCAT 114382 || |||||||| Sbjct 12714 AAGATCTGCAT 12704 >seq796 Length=44438 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || || | || || ||||||||||||||||||||| Sbjct 18834 ATTCCACCACGAAGACGGAGCACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCG 18775 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||||||||| || || || || |||| || | ||| ||||| || Sbjct 18774 GCGAGGGTACGGCCATCTTCAAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGGG 18715 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||| ||| | | |||| |||||| | | ||| Sbjct 18714 GGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTGTCAATGGTGTCTGAGCTTTCC 18655 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || || || || ||||| ||||| |||||||| Sbjct 18654 ACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTTTTGACAAATATCTGCAT 18605 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || || | || ||||| || || ||||||||||| Sbjct 19290 ATTCCACCACGAAGACGGAGCACCAAGTGAAGRGTTGATTCCTTYTGGATGTTGTAATCA 19231 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | || ||||| || || || || |||| | | ||| ||||| || Sbjct 19230 GCAAGGGTCCTGCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGG 19171 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||| ||| | | |||| ||||||| | ||| Sbjct 19170 GGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACATTGTCAATAGTGTCGGAGCTTTCA 19111 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || ||||||| ||| || |||||||| ||||| Sbjct 19110 ACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAAATTTGCAT 19061 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 114150 CAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAA 114209 |||| ||| ||||| || | | || | || | ||||| || ||||| |||||||| Sbjct 20205 CAAAAACCACCACGGAGACGGAGGACAAGGTGCAAAGTAGACTCCTTTTGGATGTTGTAG 20146 Query 114210 TCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCC 114269 || || ||| | ||||||||| || || || || |||| || | ||| |||||| Sbjct 20145 TCCGCCAGAGTCCTTCCATCTTCAAGCTGCTTCCCTGCAAAGATCAGTCTCTGCTGGTCC 20086 Query 114270 GGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGAT 114329 || || || || || ||||| |||||| || | | |||| ||| || | Sbjct 20085 GGTGGGATTCCCTCCTTGTCCTGAATCTTAGCCTTCACATTGTCAATGGTATCAGAACTC 20026 Query 114330 TCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || |||| || | ||||| || |||| || || |||||||||||||| Sbjct 20025 TCCACCTCCAAAGTTATGGTTTTCCCAGTCAAGGTCTTCACAAAAATCTGCAT 19973 >seq545 Length=31085 Score = 111 bits (122), Expect = 1e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || | || | ||||| |||||||| ||||||||||| Sbjct 2186 ATTCCACCACGTAGACGGAGGACAAGRTGAAGGGTAGACTCTTTTTGGATGTTGTAATCA 2127 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||||||| ||||| ||||| |||| || | ||| || || ||| Sbjct 2126 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGA 2067 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| |||||| ||| | | |||| |||||| | ||| Sbjct 2066 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCG 2007 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || ||||| || || || ||||| |||||||| Sbjct 2006 ACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 1957 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || | || | ||||| |||||||| ||||||||||| Sbjct 2414 ATTCCACCACGTAGACGGAGGACAAGGTGAAGGGTAGACTCTTTTTGGATGTTGTAATCA 2355 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||||||| ||||| ||||| |||| || | ||| ||||| || Sbjct 2354 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGG 2295 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||| || ||| | | || | |||||| | | ||| Sbjct 2294 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCG 2235 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || |||||||||||||| ||||| || ||||| Sbjct 2234 ACCTCAAGAGTTATAGTCTTCCCGGTCAGAGTTTTAACAAAGATTTGCAT 2185 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || ||||| ||||||||||| Sbjct 2642 ATACCACCACGAAGGCGAAGGACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCA 2583 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||||||| ||||| ||||| |||| || | ||| ||||| || Sbjct 2582 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGG 2523 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||| || ||| | | || | |||||| | | ||| Sbjct 2522 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCG 2463 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || |||||||||||||| ||||| || ||||| Sbjct 2462 ACCTCAAGAGTTATAGTCTTCCCGGTCAGAGTTTTAACAAAGATTTGCAT 2413 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 ||| || | ||| | || || || || || |||||||| || | ||| | || Sbjct 3309 CAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCCRTC 3250 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||||||||||||||||| |||| | |||||||||||| || ||||| || || ||||| Sbjct 3249 CTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTGTC 3190 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 ||||||| ||| | | |||| ||| || | || || |||| || | || Sbjct 3189 TTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGTAATTGT 3130 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || |||| ||| || |||||||| |||||| Sbjct 3129 CTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 3096 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 ||| || | ||| | || || || || || |||||||| || | ||| | || Sbjct 3537 CAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCCRTC 3478 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||||| ||||||||||| |||| | |||||||||||| || ||||| || || ||||| Sbjct 3477 CTCAAGWTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTGTC 3418 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 ||||||| ||| | | |||| ||| || | || || |||| || | || Sbjct 3417 TTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGTGATTGT 3358 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || |||| ||| || ||||| |||||||| Sbjct 3357 CTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 3325 >seq3956 Length=148667 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| |||| || ||||| || | ||| || ||||| || |||||||| |||||||| Sbjct 117755 ACCTCCACAAAGACTCAAGACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAGC 117814 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| || ||| | || |||||| ||| | || | | | ||||| || | || Sbjct 117815 AAGTGTATGATCATCCTTAAATTGTTTTCCACCATATACTAATCTTTGTTGATCTGAGGG 117874 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||||||||| |||||||| ||| | | |||| || || ||| | || Sbjct 117875 AATTCCTTCTTTGTCTTCAATCTTTGCTTTAACATTGTCAATGGAGTTGGTACTCTTCAC 117934 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | || || || | |||||||| ||||| || ||||| Sbjct 117935 ATCCAGAGTAATGGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCAT 117982 >seq558 Length=67963 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 || || || || || |||||||| || ||| | || || ||| || || || ||||| Sbjct 17122 GTGGACTCCTTCTGGATGTTGTAGTCAGCT-AGCGTTCGGCCATCCTCGAGCTGCTTACC 17180 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| | || | ||||| ||||| || ||||||||||| ||||| |||||| || Sbjct 17181 GGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTT 17240 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | |||| |||||| | || || || || | ||| | || ||||| ||||| || Sbjct 17241 AACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGT 17300 Query 114365 TTTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 17301 CTTCACAAAGATCTGCAT 17318 >seq544 Length=28317 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || | ||| | ||||| || | ||| ||||||||||| Sbjct 22216 ATTCCACCACGTAGACGGAGGACAAGATGGAG-GTAGACTCGTCTTGGATGTTGTAATCA 22274 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || | ||||||||| ||||| ||||| |||| | | | | || || ||| Sbjct 22275 GCAATTGTTTGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAACCTCCGCTGATCTGGA 22334 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| |||||| ||||| | |||| ||||| | | ||| Sbjct 22335 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTTACATTATCAATAGTGTCAGAGCTCTCG 22394 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTT--TACAAAAATCTGCAT 114382 || || | || | || || ||| | || || || ||||| |||||||| Sbjct 22395 ACCTCAAGAGTGATGGTCTTTCCGATGAGCGTCTTAAAACAAATATCTGCAT 22446 >seq3886 Length=20373 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || || |||||||| ||| Sbjct 13224 ATACCACCACGCAGACGGAGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG 13283 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || || || || ||||||||| |||| | | ||| ||||| || Sbjct 13284 GCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGG 13343 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| || | | |||| |||||||| | ||| Sbjct 13344 GGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATTATCAATGGTGTCGGAGCTTTCC 13403 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || ||||| || || || |||||||||||||| Sbjct 13404 ACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTCACAAAAATCTGCAT 13453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419914274519880