Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq728 104 4e-17
>seq728
Length=46982
Score = 104 bits (114), Expect = 4e-17
Identities = 342/527 (65%), Gaps = 16/527 (3%)
Strand=Plus/Minus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| ||||| || || ||||| |||||||| || |||||||| || |||||||||
Sbjct 2676 CTTGCCTTTTTTGCTGCCTCAGACGGCATCGTTTTAGAGAACCTCGCTGGAAGGTTCATG 2617
Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAA 42541
||||| || ||| |||| || ||| ||||| || ||||| || ||||| |||||
Sbjct 2616 AAAGACGTCCAGGTTGCCGAGGTTCG-TGCTTTCTATGGGTTCCAAATCGCCATTGAGAA 2558
Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601
| || || ||| ||||| ||| | | |||||||| |||| | | |||
Sbjct 2557 TATCCATTCCGAGATGTACAGTTTGCTGTTGGAGTCGTACATCAAGGATTCTGACGA--- 2501
Query 42602 TAACGGGC----TGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657
|| | || ||||| || || ||||| || || || | | ||||||||| | |
Sbjct 2500 -AAAGAGCAAATTGTTCCGTGCGATTGAGACAATCCCTTGTGTTGAAAAGAAGGCGAAAT 2442
Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717
|||| || |||||||| | |||| ||| |||| ||| | |||| || |||
Sbjct 2441 GGGCCCTTCGTTGGATCGATGGGTCCGA---AACCTTCGCGGAGCGTTTGGTGGCTTTTG 2385
Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777
|| || || || || |||||| || |||| || || || ||| | || |
Sbjct 2384 CCTGTGTTGAAGGGATTTTCTTCAGCGGAAGCTTCTGTTCGATATTTTGGTTGAAAAAAC 2325
Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837
|| || ||||| ||| | |||||||| || || | || || ||||| || |||
Sbjct 2324 GGGGGTTAATGCCTGGATTAACCTTCTCAAATGAGTTAATTTCAAGAGACGAAGGTTTGC 2265
Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGC 42897
| | || ||||| || | || | | || || ||| |||| | ||||||
Sbjct 2264 ACTGTGATTTTGCGTGTTTGCTTTAC---AGTTTGCTAAGGACGAAGCTAACTGAGGAGC 2208
Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944
| ||| ||| || | | || || |||||||| || | |||||||
Sbjct 2207 GAGTCAGGGGAATTGTTGCAGATGCTGTGGAGATAGAAAGGGAGTTC 2161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 943831735722400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |