Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq728 104 4e-17 >seq728 Length=46982 Score = 104 bits (114), Expect = 4e-17 Identities = 342/527 (65%), Gaps = 16/527 (3%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||| || || ||||| |||||||| || |||||||| || ||||||||| Sbjct 2676 CTTGCCTTTTTTGCTGCCTCAGACGGCATCGTTTTAGAGAACCTCGCTGGAAGGTTCATG 2617 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAA 42541 ||||| || ||| |||| || ||| ||||| || ||||| || ||||| ||||| Sbjct 2616 AAAGACGTCCAGGTTGCCGAGGTTCG-TGCTTTCTATGGGTTCCAAATCGCCATTGAGAA 2558 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | || || ||| ||||| ||| | | |||||||| |||| | | ||| Sbjct 2557 TATCCATTCCGAGATGTACAGTTTGCTGTTGGAGTCGTACATCAAGGATTCTGACGA--- 2501 Query 42602 TAACGGGC----TGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 || | || ||||| || || ||||| || || || | | ||||||||| | | Sbjct 2500 -AAAGAGCAAATTGTTCCGTGCGATTGAGACAATCCCTTGTGTTGAAAAGAAGGCGAAAT 2442 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 |||| || |||||||| | |||| ||| |||| ||| | |||| || ||| Sbjct 2441 GGGCCCTTCGTTGGATCGATGGGTCCGA---AACCTTCGCGGAGCGTTTGGTGGCTTTTG 2385 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777 || || || || || |||||| || |||| || || || ||| | || | Sbjct 2384 CCTGTGTTGAAGGGATTTTCTTCAGCGGAAGCTTCTGTTCGATATTTTGGTTGAAAAAAC 2325 Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 || || ||||| ||| | |||||||| || || | || || ||||| || ||| Sbjct 2324 GGGGGTTAATGCCTGGATTAACCTTCTCAAATGAGTTAATTTCAAGAGACGAAGGTTTGC 2265 Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGC 42897 | | || ||||| || | || | | || || ||| |||| | |||||| Sbjct 2264 ACTGTGATTTTGCGTGTTTGCTTTAC---AGTTTGCTAAGGACGAAGCTAACTGAGGAGC 2208 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944 | ||| ||| || | | || || |||||||| || | ||||||| Sbjct 2207 GAGTCAGGGGAATTGTTGCAGATGCTGTGGAGATAGAAAGGGAGTTC 2161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943831735722400