Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq796 86.0 5e-12 >seq796 Length=44438 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| || ||||| |||| ||||| || ||||||||| ||||||||||| || Sbjct 19743 CCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGCT 19684 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || |||| | | || ||||| ||||| |||||||| |||| | |||||| || || Sbjct 19683 AA-TGTCCTTCCATCTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGG 19625 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAA---TGGAACTCACACTATCAGTAGATTC 34076 | | ||||||||| |||||| ||||| || | | | |||| | ||| Sbjct 19624 AATACCTTCTTTGTCCTGAATTTTGGCCTTAACATTGTCA---ATGGTGTCAGAACTTTC 19568 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || ||||| || || || | || ||||||||||||||||| Sbjct 19567 CACCTCAAGGGTGATTGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 19517 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| || |||| || ||| |||||||| || ||||||||||| |||||||| || Sbjct 19972 ACCTCCCCTGAGCCTCAACACAAGATGAAGGGTTGATTCCTTCTGAATATTGTAATCGGC 19913 Query 33960 CAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || |||| | | || ||||| |||||||| ||||| |||| | ||||| || | Sbjct 19912 TAA-TGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAACCTTTGCTGGTCTGGTG 19854 Query 34019 GCACGCTCTCTTTGTCCATAATTTT 34043 | | | |||||||||| ||| || Sbjct 19853 GGATACCCTCTTTGTCCTGAATCTT 19829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396854362877980