Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq30006 138 3e-27
seq545 136 9e-27
seq16835 132 1e-25
seq3886 125 2e-23
seq796 113 1e-19
seq9641 104 6e-17
seq544 98.7 2e-15
seq4733 84.2 5e-11
>seq30006
Length=21699
Score = 138 bits (152), Expect = 3e-27
Identities = 147/194 (76%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343
|||| || || || || || || || || ||||| ||||| | || ||||| |||||||
Sbjct 12893 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 12834
Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403
||| ||||| || ||| || ||||| || || || || || ||||| || || |
Sbjct 12833 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGT 12774
Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463
| |||| ||||| ||||| ||||| ||||||||||||||||| || ||||| || ||||
Sbjct 12773 CAATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGA 12714
Query 288464 ATATCTGCATTATG 288477
| ||||||||| ||
Sbjct 12713 AGATCTGCATTTTG 12700
>seq545
Length=31085
Score = 136 bits (150), Expect = 9e-27
Identities = 169/230 (73%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| || ||||| || || || ||||||| || ||||| ||||| |||||||| ||
Sbjct 3779 CCGCCACGGAGCCTCAGGACAAGATGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGCA 3720
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || || || || ||||| || | ||||||| ||||
Sbjct 3719 AGGGTGCGACCATCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGTTGATCTGGTGGG 3660
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423
|| ||||| || ||||| || || |||||||| || || |||| ||| |||| ||
Sbjct 3659 ATCCCTTCCTTGTCCTGTATCTTTGCTTTCACATTGTCAATAGTATCAGAGCTC---TCC 3603
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || | ||||| |||||||| ||||||||||| || || ||||||||
Sbjct 3602 ACCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCAT 3553
Score = 109 bits (120), Expect = 1e-18
Identities = 166/234 (71%), Gaps = 12/234 (5%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | ||| || || |||| ||| || |||||||| || || || ||
Sbjct 2639 CCACCACGAAGGCGAAGGACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCA 2580
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || ||||| | ||||| || || |||||||| | ||| || ||||||
Sbjct 2579 AGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGG---TCTGGG 2523
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420
|| ||||| || || || ||||| ||||| || || || || | || ||||
Sbjct 2522 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTC--- 2466
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
|| || || || || || ||||||||||||||||| || || || || ||||||
Sbjct 2465 TCGACCTCAAGAGTTATAGTCTTCCCGGTCAGAGTTTTAACAAAGATTTGCATT 2412
Score = 105 bits (116), Expect = 2e-17
Identities = 166/235 (71%), Gaps = 12/235 (5%)
Strand=Plus/Minus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| || || | || || || |||| || ||||||||||| || || || ||
Sbjct 2412 TCCACCACGTAGACGGAGGACAAGGTGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGC 2353
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
|| || || || ||||| | ||||| || || |||||||| | ||| || |||||
Sbjct 2352 AAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTG---GTCTGG 2296
Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGA 288419
| || ||||| || || || ||||| ||||| || || || || | || ||||
Sbjct 2295 GGGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTC-- 2238
Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
|| || || || || || ||||||||||||||||| || || || || ||||||
Sbjct 2237 -TCGACCTCAAGAGTTATAGTCTTCCCGGTCAGAGTTTTAACAAAGATTTGCATT 2184
Score = 102 bits (112), Expect = 2e-16
Identities = 164/234 (70%), Gaps = 12/234 (5%)
Strand=Plus/Minus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| || || | || || || |||| || ||||||||||| || || || ||
Sbjct 2184 TCCACCACGTAGACGGAGGACAAGRTGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGC 2125
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT-- 288363
|| || || || ||||| | ||||| || || |||||||| | ||| || ||||
Sbjct 2124 AAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTG---ATCTGG 2068
Query 288364 -GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGA 288419
|| || ||||| || || || || || ||||| || || || || | || |||
Sbjct 2067 AGGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTC-- 2010
Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || ||||| ||||| ||||| || ||||| || |||||||||||
Sbjct 2009 -TCGACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 1957
>seq16835
Length=8075
Score = 132 bits (146), Expect = 1e-25
Identities = 168/230 (73%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || |||||||| | ||| || || ||||| || ||||||||
Sbjct 6875 CCACCACGGAGACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCA 6934
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || || || | || ||||| ||||| |||| |||||| || ||||||
Sbjct 6935 AGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGG---TCTGGG 6991
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| ||||| || |||||||| || ||||| || || || || | ||| || ||
Sbjct 6992 GGAATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCA 7051
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || |||||||||||||| || || || || ||||| ||||||||
Sbjct 7052 ACCTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 7101
>seq3886
Length=20373
Score = 125 bits (138), Expect = 2e-23
Identities = 169/233 (73%), Gaps = 12/233 (5%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || | ||| | ||| || || ||||| || ||||| ||
Sbjct 13683 CCACCACGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 13742
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || ||||| || || |||||||| ||||||| | ||| || ||||||
Sbjct 13743 AGGGTGCGGCCATCTTCCAACTGCTTTCCTGCAAAGATCAACCTCTGCTGG---TCTGGG 13799
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420
|| ||||| ||||||||||| || || || ||||| || || | || ||| |
Sbjct 13800 GGAATGCCTTCCTTATCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCT---T 13856
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || || |||||||| || || |||||||| ||||| ||||||||
Sbjct 13857 TCGACCTCAAGGGTAATCGTCTTACCCGTAAGAGTCTTCACGAAGATCTGCAT 13909
Score = 114 bits (126), Expect = 3e-20
Identities = 164/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || ||||| | || || || ||||| || ||||| ||
Sbjct 13455 CCACCACGGAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCT 13514
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| ||||| || || || | || || || |||||||||| | ||| || ||||||
Sbjct 13515 AAGGTGCGGCCATCCTCGAGCTGCTTCCCAGCGAAGATCAACCTCTGCTGG---TCTGGG 13571
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| ||||| ||||||||||| || || |||||||| || || | ||| |||
Sbjct 13572 GGGATCCCTTCCTTATCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTTTCC 13631
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || | ||||| ||||| ||||| |||||||| ||||| ||||||||
Sbjct 13632 ACCTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTAACGAAGATCTGCAT 13681
Score = 98.7 bits (108), Expect = 2e-15
Identities = 161/231 (70%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || || || | || || || |||||||| ||||| ||
Sbjct 12771 CCACCACGGAGACGGAGGACAAGGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCAGCA 12830
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || || || |||||||||| | ||| || ||||
Sbjct 12831 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGTGGG 12890
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCT 288423
|| || || || ||||| || || |||||||| || || || | || ||| ||
Sbjct 12891 ATCCCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCGATGGTGTCAGAACTC---TCC 12947
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
|| || | ||||| ||||||||||||| ||||| || || |||||||||
Sbjct 12948 ACCTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTCACAAAGATCTGCATT 12998
>seq796
Length=44438
Score = 113 bits (124), Expect = 1e-19
Identities = 167/234 (71%), Gaps = 12/234 (5%)
Strand=Plus/Minus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| || || | || || | |||| ||| |||||||| || || || |||||
Sbjct 18832 TCCACCACGAAGACGGAGCACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCGGC 18773
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
||| || || || ||||| | || || || || |||||||| | ||| || |||||
Sbjct 18772 GAGGGTACGGCCATCTTCAAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGG---TCTGG 18716
Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGA 288419
| || ||||| || |||||||| || ||||| ||||| || || | || |||
Sbjct 18715 GGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTGTCAATGGTGTCTGAGCT--- 18659
Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||| || || || ||||| ||||| || || || || ||||| |||||||||||
Sbjct 18658 TTCCACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTTTTGACAAATATCTGCAT 18605
>seq9641
Length=27822
Score = 104 bits (114), Expect = 6e-17
Identities = 86/105 (82%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429
||||| || ||||| || || ||||| || || || || | |||||| ||||| |||||
Sbjct 27343 CCTTCCTTGTCCTGTATCTTAGCTTTAACATTATCGATGGTATCGCTGGATTCAACTTCC 27402
Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
||||| ||||| || ||||||||||| || |||||||||||||||
Sbjct 27403 AGCGTTATCGTTTTACCGGTCAGAGTTTTCACGAATATCTGCATT 27447
>seq544
Length=28317
Score = 98.7 bits (108), Expect = 2e-15
Identities = 172/245 (70%), Gaps = 14/245 (6%)
Strand=Plus/Plus
Query 288235 ATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATA 288294
||||| | | |||||| ||| | || || || ||||||| || ||||| ||| ||
Sbjct 21139 ATTCAGAAGTTTCCACCACGGTGCCTGAGGACAAGATGAAGAGTAGACTCTTTGTGGCTA 21198
Query 288295 TTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGT 288354
|| ||||| || || ||||| || || || | || || || || ||||| || | | ||
Sbjct 21199 TTGTAGTCTGCAAGGGTGCGACCATCCTCAAGCTGCTTACCAGCAAAGATAAGCCTCCGT 21258
Query 288355 TGAGAATCTGG--GATTCCTT-CTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAA 288411
||| ||||| || ||||| | || ||||| || | |||||||| | | ||| |
Sbjct 21259 TGA---TCTGGTGGAATCCTTTCCTTGTCCTGTATCCTTGCTTTCACAGT--CAGTAGTA 21313
Query 288412 TC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468
|| |||| | || || | ||||| |||||||| ||||||||||| || || |||
Sbjct 21314 TCTGAGCTC---TTAACCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTCACAAAGATC 21370
Query 288469 TGCAT 288473
|||||
Sbjct 21371 TGCAT 21375
>seq4733
Length=47255
Score = 84.2 bits (92), Expect = 5e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 72702 AGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGAT 72761
|| |||||||| | ||| ||| || ||||||||||||||| |||||||||| |||||
Sbjct 31742 AGGGATTGGGGTTTTGCTGGGGACTATGTAGAAGCAATGTGGATGATGCTGCAGCAAGAG 31801
Query 72762 ACTCCGGATGACTATGTGATTGCAAC 72787
| |||||||| |||||| | |||||
Sbjct 31802 AAGCCGGATGATTATGTGGTAGCAAC 31827
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179004635297220
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