Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq1346 86.0 7e-12
>seq1346
Length=51105
Score = 86.0 bits (94), Expect = 7e-12
Identities = 220/333 (66%), Gaps = 14/333 (4%)
Strand=Plus/Minus
Query 8629 CGGCACATTGGCTCGTGAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTA 8688
|||| |||||| | | ||||||||| ||| | || || | || |||||| || |
Sbjct 21352 CGGCGCATTGGTACACGGTGAATTACCGGGAAGCGTACGGGATATTCGCGTGCAATGGGA 21293
Query 8689 TTCTCTTCAACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACC- 8747
||||||||||||||||||| || ||||| || | |||||||||| | |||||| |||
Sbjct 21292 TTCTCTTCAACCACGAGTCTCCTCGTCGGGGTGAGAATTTCGTGACGAGGAAGATTACCC 21233
Query 8748 -----GATGGTATCAAACAAATCGTCGCGGGT-GAGAGGGAGTTCATTGAATTGGGGAAC 8801
| || | | | |||||| || | |||| || | || ||||| ||
Sbjct 21232 GGGCTGTAGGGAGGATAAAAATCG----GGCTACAGAGCAAGGTTTTT---TTGGGTAAT 21180
Query 8802 CTCAACGCCGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTA 8861
| | || ||||||||||| || |||||||| ||||| |||||| | |
Sbjct 21179 TTACAGGCGTCAAGGGACTGGGGCTTTGCTGGAGACTATGTAGAAGCAATGTGGATGATG 21120
Query 8862 CTTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGG 8921
|| || ||||| | | ||||| || || || || |||| ||| |||| | || |
Sbjct 21119 CTGCAGCAAGAGAAACCAGACGACTACGTTGTGGCAACGGAGGATTCACATACTGTAGAG 21060
Query 8922 GAGTTCGTTGAGTTGTGCTTTAGGGAAGTTGGA 8954
||||| | || | |||||| | ||||||
Sbjct 21059 GAGTTTCTAGAAGTAGCATTTAGGTACGTTGGA 21027
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597032597109200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |