Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1346 86.0 7e-12 >seq1346 Length=51105 Score = 86.0 bits (94), Expect = 7e-12 Identities = 220/333 (66%), Gaps = 14/333 (4%) Strand=Plus/Minus Query 8629 CGGCACATTGGCTCGTGAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTA 8688 |||| |||||| | | ||||||||| ||| | || || | || |||||| || | Sbjct 21352 CGGCGCATTGGTACACGGTGAATTACCGGGAAGCGTACGGGATATTCGCGTGCAATGGGA 21293 Query 8689 TTCTCTTCAACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACC- 8747 ||||||||||||||||||| || ||||| || | |||||||||| | |||||| ||| Sbjct 21292 TTCTCTTCAACCACGAGTCTCCTCGTCGGGGTGAGAATTTCGTGACGAGGAAGATTACCC 21233 Query 8748 -----GATGGTATCAAACAAATCGTCGCGGGT-GAGAGGGAGTTCATTGAATTGGGGAAC 8801 | || | | | |||||| || | |||| || | || ||||| || Sbjct 21232 GGGCTGTAGGGAGGATAAAAATCG----GGCTACAGAGCAAGGTTTTT---TTGGGTAAT 21180 Query 8802 CTCAACGCCGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTA 8861 | | || ||||||||||| || |||||||| ||||| |||||| | | Sbjct 21179 TTACAGGCGTCAAGGGACTGGGGCTTTGCTGGAGACTATGTAGAAGCAATGTGGATGATG 21120 Query 8862 CTTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGG 8921 || || ||||| | | ||||| || || || || |||| ||| |||| | || | Sbjct 21119 CTGCAGCAAGAGAAACCAGACGACTACGTTGTGGCAACGGAGGATTCACATACTGTAGAG 21060 Query 8922 GAGTTCGTTGAGTTGTGCTTTAGGGAAGTTGGA 8954 ||||| | || | |||||| | |||||| Sbjct 21059 GAGTTTCTAGAAGTAGCATTTAGGTACGTTGGA 21027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597032597109200