Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq30006 120 3e-22
seq558 104 3e-17
seq3886 96.9 4e-15
seq16835 95.1 1e-14
seq545 95.1 1e-14
seq796 91.5 2e-13
>seq30006
Length=21699
Score = 120 bits (132), Expect = 3e-22
Identities = 146/195 (75%), Gaps = 3/195 (2%)
Strand=Plus/Minus
Query 42019 CCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| ||||| ||||||||||| ||||| || | || || |||||||| || |||||
Sbjct 12894 CCTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAG 12835
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136
|| | |||||||||||| | ||| | | ||||||| | ||| | || | ||||| |
Sbjct 12834 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGT-CTTGAATCTTAGCTTTGACATT 12776
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | |||||||| ||||| || || | |||||| || || ||||| || || || ||
Sbjct 12775 GTCAATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCAC 12716
Query 42197 AAAGATTTGCATTTT 42211
||||| ||||||||
Sbjct 12715 GAAGATCTGCATTTT 12701
>seq558
Length=67963
Score = 104 bits (114), Expect = 3e-17
Identities = 142/196 (72%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| ||||| || || || | || || ||||||||||| |||||
Sbjct 17127 CTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAA 17186
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| | |||||||||||| | ||| | || ||||||| | ||| | || | | | | |
Sbjct 17187 AATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGT-CTTGAATCTTAGCCTTAACAT 17245
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | ||||| || || || || | || || || |||||||| || ||||| |
Sbjct 17246 TGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGTCTTCA 17305
Query 42196 CAAAGATTTGCATTTT 42211
||||||| ||||||||
Sbjct 17306 CAAAGATCTGCATTTT 17321
Score = 93.3 bits (102), Expect = 5e-14
Identities = 139/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| || || ||||| ||||| || || || | || || |||||||| || || ||
Sbjct 63824 TCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCAAGCTGCTTTCCTGCAAAA 63765
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137
|| | | ||||||||| | ||| | || ||||||||| ||| | || | | | | |
Sbjct 63764 ATCAACCTCTGCTGGTCTGGTGGGATGCCTTCCTTGTCC-TGAATCTTAGCCTTAACATT 63706
Query 42138 GCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| || | |||| || || || || | || || || ||||||||||| ||||| ||
Sbjct 63705 GTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCAC 63646
Query 42197 AAAGATTTGCATTTT 42211
|||||| ||||||||
Sbjct 63645 AAAGATCTGCATTTT 63631
>seq3886
Length=20373
Score = 96.9 bits (106), Expect = 4e-15
Identities = 142/197 (72%), Gaps = 8/197 (4%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || |||||||| ||||| || || || | || || |||||||||||||||||
Sbjct 12806 CTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAA 12865
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135
|| | | ||||||||| | ||| | | |||||||||| ||| | || | ||| |
Sbjct 12866 GATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCC-TGAATCTTAGCTTTCACAT 12924
Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192
| | | ||||| ||| ||||| || | |||||||| || || || | ||||
Sbjct 12925 TGTCGATGGTGTCAGAACTC---TCCACCTCCAAAGTGATGGTCTTCCCGGTCAAGGTCT 12981
Query 42193 TTACAAAGATTTGCATT 42209
| |||||||| ||||||
Sbjct 12982 TCACAAAGATCTGCATT 12998
Score = 96.9 bits (106), Expect = 4e-15
Identities = 150/213 (70%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058
|||||| |||| || ||||||||| || ||||| || |||| ||| || | || ||
Sbjct 13016 CACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGCCAAAGTGCGGCCATCCTC 13075
Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118
|||||||| ||||| || || | | ||||||||| | || | | |||||||||
Sbjct 13076 GAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTG 13135
Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGT 42175
||| || |||| | | | |||||| ||| || || || | ||||||||
Sbjct 13136 GATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTC---TCAACCTCCAGGGTGATGGT 13192
Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| || || || ||||| ||||||||||||||
Sbjct 13193 TTTCCCGGTAAGGGTCTTAACAAAGATTTGCAT 13225
Score = 89.7 bits (98), Expect = 6e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || || || || || |||| || |||||||||||||||||
Sbjct 13262 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAA 13321
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| | | ||||||||| | || | | |||||||||| ||| || || | |
Sbjct 13322 GATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATT 13381
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | |||||| |||||| || | |||||||| || || || || ||||| ||
Sbjct 13382 ATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTCAC 13441
Query 42197 AAAGATTTGCAT 42208
||| || |||||
Sbjct 13442 AAAAATCTGCAT 13453
>seq16835
Length=8075
Score = 95.1 bits (104), Expect = 1e-14
Identities = 153/220 (70%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | ||| | ||| | ||| |||||| || || ||||| || || ||||| || |
Sbjct 6886 ACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACC 6945
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || |||||||| || ||||| || | ||||||||||| | || | | |||||
Sbjct 6946 ATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTT 7005
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
|||| ||| || ||||| | | | |||||| || || || || | |||||
Sbjct 7006 GTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGAT 7065
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212
|| || |||||||| || || || ||||| ||||| |||
Sbjct 7066 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTC 7105
>seq545
Length=31085
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|||||||| ||||||||||||| ||| | || |||||| || || ||||| || ||
Sbjct 3551 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 3492
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
||||||| | | || || || || |||||||| || || | ||||| ||||| | ||
Sbjct 3491 AGAGTCCTCCCRTCCTCAAGWTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 3432
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA--TTCCA 42159
| | |||||||| | ||| | |||| || | | | || | || || | || |
Sbjct 3431 ATACCCTCCTTGT-CTTGAATCTTTGCTTTCACATTGTCAATG-GTATCTGAACTCTCAA 3374
Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| || | ||||| || || || || | ||||| |||||||| |||||
Sbjct 3373 CCTCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 3325
Score = 91.5 bits (100), Expect = 2e-13
Identities = 110/149 (74%), Gaps = 1/149 (1%)
Strand=Plus/Minus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|||||||| ||||||||||||| ||| | || |||||| || || ||||| || ||
Sbjct 3323 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 3264
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
||||||| | | || || || || |||||||| || || | ||||| ||||| | ||
Sbjct 3263 AGAGTCCTCCCRTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 3204
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTT 42130
| | |||||||| | ||| | |||| ||
Sbjct 3203 ATACCCTCCTTGT-CTTGAATCTTTGCTT 3176
Score = 89.7 bits (98), Expect = 6e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
||| || ||||||||||| |||||||| |||| | || || || ||||| || || ||
Sbjct 2832 CTCTTTCTGAATATTGTAGTCAGCCAGGGTCCTTCCATCCTCAAGTTGCTTGCCGGCAAA 2773
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| |||| ||||||||| | || | | ||||||||| ||| |||| | | |||
Sbjct 2772 GATCAGTCTCTGCTGGTCTGGAGGAATCCCTTCCTTGTCC-TGAATTTTGGCCTTCACGT 2714
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | || ||| ||| || || | |||||||| || || || || ||||| |
Sbjct 2713 TGTCAATGGTATCGGAACTTTCAACTTCAAGGGTGATGGTCTTTCCAGTAAGTGTCTTGA 2654
Query 42196 CAAAGATTTGCAT 42208
||||||| |||||
Sbjct 2653 CAAAGATCTGCAT 2641
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/197 (71%), Gaps = 8/197 (4%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
||||||||| || ||||||||||| || || || | || || ||||| || ||||| ||
Sbjct 2604 CTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAA 2545
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135
|| || | ||||||||| | || | | ||||||| | ||| |||| | |||||
Sbjct 2544 GATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGT-CTTGAATTTTAGCTTTGACAT 2486
Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192
| | | ||||| |||| || || || | || || || || || || || || |
Sbjct 2485 TATCGATGGTGTCTGAGCTC---TCGACCTCAAGAGTTATAGTCTTCCCGGTCAGAGTTT 2429
Query 42193 TTACAAAGATTTGCATT 42209
| |||||||||||||||
Sbjct 2428 TAACAAAGATTTGCATT 2412
>seq796
Length=44438
Score = 91.5 bits (100), Expect = 2e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| || || ||||||||||| || |||| |||| || |||||||| || || ||
Sbjct 19251 TCCTTYTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCAAGCTGCTTTCCGGCAAAG 19192
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137
|| | || ||||||||| | || | || ||||||||| ||| || ||| | |
Sbjct 19191 ATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACATTG 19132
Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197
| | |||||| ||| || || | |||||||| || || || | ||||| |||
Sbjct 19131 TCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACA 19072
Query 42198 AAGATTTGCATT 42209
|| |||||||||
Sbjct 19071 AAAATTTGCATT 19060
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 542920891021600
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