Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq545 127 2e-24 seq16835 102 8e-17 seq30006 96.9 3e-15 seq558 91.5 1e-13 seq796 87.8 2e-12 >seq545 Length=31085 Score = 127 bits (140), Expect = 2e-24 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||||||||| || | ||| | |||||||||| || ||||||||||| Sbjct 3323 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 3264 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | | ||||| ||||||||||| | | |||| | |||||||||||| || || Sbjct 3263 AGAGTCCTCCCRTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 3204 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | |||| ||| |||| || | ||| || | ||| | Sbjct 3203 ATACCCTCCTTGTC-TTGAATCTTTGCTTTCACATTG-TCAATGGTATCTGAACTCTCAA 3146 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | || || ||||||| ||| || |||||||| |||||| Sbjct 3145 CCTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 3096 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||||||||| || | ||| | |||||||||| || ||||||||||| Sbjct 3551 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 3492 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | | ||||| || |||||||| | | |||| | |||||||||||| || || Sbjct 3491 AGAGTCCTCCCRTCCTCAAGWTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 3432 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | |||| ||| |||| || | ||| || | ||| | Sbjct 3431 ATACCCTCCTTGTC-TTGAATCTTTGCTTTCACATTG-TCAATGGTATCTGAACTCTCAA 3374 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||||| ||| || ||||| |||||||| Sbjct 3373 CCTCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 3325 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||| || | || || || || || ||||| || | | Sbjct 2606 GACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCA 2547 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || |||||||| ||||| ||| |||| | ||| | Sbjct 2546 AAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCT-TGAATTTTAGCTTTGAC 2488 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||| | ||| ||||| | || | || || || ||||||||||| Sbjct 2487 ATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTCCCGGTCAGAGTTTT 2428 Query 138600 TACAAAAATCTGCAT 138614 ||||| || ||||| Sbjct 2427 AACAAAGATTTGCAT 2413 >seq16835 Length=8075 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | |||||| ||||| || || || |||| Sbjct 6908 GACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCCTCAAGCTGCTTTCCGGCG 6967 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || | |||||| ||||| || || || ||||| ||||| ||| || ||| | | Sbjct 6968 AAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATCTTGGCTTTGACA 7027 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| ||||| ||||| | || | ||| || || || || ||||| Sbjct 7028 TTG-TCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTT 7086 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 7087 CACGAAGATCTGCAT 7101 >seq30006 Length=21699 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/213 (73%), Gaps = 10/213 (5%) Strand=Plus/Minus Query 138408 TAAATGTATGTTTGACT--CCTTT-TGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCT 138463 ||||| ||| | | ||| ||||| ||||||||||| || ||| | |||||| || | Sbjct 12912 TAAATTTATCTAT-ACTTACCTTTCTGAATGTTGTAATCAGCT-AGAGTACGTCCATCTT 12855 Query 138464 CGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGG 138523 |||| || || |||| |||| | ||||| |||||||| || |||||||| ||||| Sbjct 12854 CGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTC-T 12796 Query 138524 TGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| | || | ||| |||| || | |||||| | || || || || | ||| | ||| Sbjct 12795 TGAATCTTAGCTTTGACATTG-TCAATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGT 12737 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || |||||||| || || |||||||| Sbjct 12736 CTTCCCCGTAAGAGTTTTCACGAAGATCTGCAT 12704 >seq558 Length=67963 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 |||||||| || ||||||||||| ||| | || || |||||||| || ||||||| Sbjct 17125 GACTCCTTCTGGATGTTGTAGTCAGCT-AGCGTTCGGCCATCCTCGAGCTGCTTACCGGC 17183 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538 | || | ||||| ||||| || || || ||||| ||||| ||| | || | ||| Sbjct 17184 GAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTC-TTGAATCTTAGCCTTAA 17242 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | |||||| | ||||| ||||| | || | || || || ||||| || Sbjct 17243 CATTG-TCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGTC 17301 Query 138598 TTTACAAAAATCTGCAT 138614 || ||||| |||||||| Sbjct 17302 TTCACAAAGATCTGCAT 17318 >seq796 Length=44438 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCG-CT 138446 || ||||| | ||||| || || || | | |||||||||| || |||||||| ||| || Sbjct 19743 CCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGCT 19684 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || | || || | || || |||| | |||| | | ||| ||||| || || Sbjct 19683 AAT-GTCCTTCCATCTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGG 19625 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCC 138564 |||||||||||||| ||| |||| | ||| |||| || | |||||| | ||| Sbjct 19624 AATACCTTCTTTGTC-CTGAATTTTGGCCTTAACATTG-TCAATGGTGTCAGAACTTTCC 19567 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | || || ||||||| || || ||||| || ||||| Sbjct 19566 ACCTCAAGGGTGATTGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 19517 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| |||||||||||||| ||| | ||||| || || || || || || | | Sbjct 18798 GACTCTTTTTGAATGTTGTAATCGGCGAGGGTACGGCCATCTTCAAGCTGCTTGCCCGCA 18739 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || | ||| ||||| || || || ||||| ||||| || | || | ||||| Sbjct 18738 AAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC-CTGGATCTTGGCTTTAAC 18680 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||| | |||||||| | || | || || ||||| || |||| Sbjct 18679 GTTG-TCAATGGTGTCTGAGCTTTCCACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTTT 18621 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 18620 TGACAAATATCTGCAT 18605 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||||||||| || ||| | || || || || || || | | Sbjct 20166 GACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGCTGCTTCCCTGCA 20107 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| || | ||| |||||||| || || || || ||||| ||| | || | || Sbjct 20106 AAGATCAGTCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTC-CTGAATCTTAGCCTTCAC 20048 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||| || | ||||||||| | || | ||||| ||||||| || | Sbjct 20047 ATTG-TCAATGGTATCAGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTCAAGGTCT 19989 Query 138599 TTACAAAAATCTGCAT 138614 | |||||||||||||| Sbjct 19988 TCACAAAAATCTGCAT 19973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495995720992800