Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq545 122 6e-23
seq796 102 6e-17
seq30006 95.1 9e-15
seq558 89.7 4e-13
>seq545
Length=31085
Score = 122 bits (134), Expect = 6e-23
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
|| |||| ||| | || || | ||| || || || || || || |||||||| ||
Sbjct 3323 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 3264
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
||| | ||| | || || | |||||| ||||| | ||||||||||||||||| |||
Sbjct 3263 AGAGTCCTCCCRTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 3204
Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128
|| || |||||||| ||| |||||||| ||| | || || ||||| | | || ||
Sbjct 3203 ATACCCTCCTTGTCTTGAATCTTTGCTTTC-ACATTGTCAATGGTATCTGAACTCTCAAC 3145
Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || ||||| || || || |||| ||| || ||||||||||||||
Sbjct 3144 CTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 3097
Score = 105 bits (116), Expect = 5e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
||||||||||| |||||||| ||||||||||| || ||| | ||||| | |||
Sbjct 2387 TGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 2328
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| ||||| | |||| | ||| ||||| ||||| ||||||||||| ||||||
Sbjct 2327 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 2268
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
||| ||| | || || || || | || || || | || || || || || |||
Sbjct 2267 GCTTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTCCCGGTC 2208
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
|||||||| ||||| ||||||||
Sbjct 2207 AGAGTTTTAACAAAGATTTGCAT 2185
Score = 105 bits (116), Expect = 5e-18
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
|| |||| ||| | || || | ||| || || || || || || |||||||| ||
Sbjct 3551 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 3492
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
||| | ||| | || || | ||||| ||||| | ||||||||||||||||| |||
Sbjct 3491 AGAGTCCTCCCRTCCTCAAGWTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 3432
Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128
|| || |||||||| ||| ||||| ||| ||| | || || ||||| | | || ||
Sbjct 3431 ATACCCTCCTTGTCTTGAATCTTTGC-TTTCACATTGTCAATGGTATCTGAACTCTCAAC 3373
Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || || || || || |||| ||| || ||||| || |||||
Sbjct 3372 CTCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 3325
Score = 96.9 bits (106), Expect = 2e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|||||||| || || ||||| ||||||||||| || ||| | ||||| | |||
Sbjct 2615 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 2556
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| ||||| | |||| | ||| ||||| ||||| ||||||||||| ||||||
Sbjct 2555 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 2496
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
||| ||| | || || || || | || || || | || || || || || |||
Sbjct 2495 GCTTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTCCCGGTC 2436
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
|||||||| ||||| ||||||||
Sbjct 2435 AGAGTTTTAACAAAGATTTGCAT 2413
Score = 95.1 bits (104), Expect = 9e-15
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||| | || || | ||| | ||| | |||||| ||||| || || ||||| ||
Sbjct 2869 TGCCACCCCTCAGTCGAAGAACAAGATGTAAGGTAGACTCTTTCTGAATATTGTAGTCAG 2810
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
|| | || | || || | ||| ||||| || | |||| | ||| ||||| |
Sbjct 2809 CCAGGGTCCTTCCATCCTCAAGTTGCTTGCCGGCAAAGATCAGTCTCTGCTGGTCTGGAG 2750
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
|||| ||||||||||| ||||||| || || | || || |||||| | |||| |
Sbjct 2749 GAATCCCTTCCTTGTCCTGAATTTTGGCCTTCACGTTGTCAATGGTATCGGAACTTTCAA 2690
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
| || | ||| ||||| || || || || || || ||||| || ||||||
Sbjct 2689 CTTCAAGGGTGATGGTCTTTCCAGTAAGTGTCTTGACAAAGATCTGCATA 2640
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
||||||||||| |||||||| ||||||||||| || ||| | ||||| | |||
Sbjct 2159 TGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 2100
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| ||||| | |||| | ||| || || ||||| ||||||||||| ||| ||
Sbjct 2099 TTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTA 2040
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
||| ||| | || || || || | | || || || | || ||||| || || ||
Sbjct 2039 GCTTTGACATTATCAATGGTGTCAGAACTCTCGACCTCAAGAGTGATGGTCTTTCCGGTG 1980
Query 15154 AGAGTTTTTACAAAAATTTGCATATTTGAAATAAATT 15190
|| || || ||||| || ||| || ||||||| |||
Sbjct 1979 AGTGTCTTAACAAATATCTGC--ATCTGAAATATATT 1945
Score = 91.5 bits (100), Expect = 1e-13
Identities = 162/232 (70%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||||| | | | ||| | || ||||| || ||||| || |||||||||| |
Sbjct 3097 TGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAAT--C 3040
Query 15008 TGAGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065
|| || | || | || || | ||| || ||||| | ||||| | ||| |||||
Sbjct 3039 TGCCAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGG 2980
Query 15066 TGGAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTT 15124
||||| || |||||||| || ||||| ||| ||| | || || ||||| | | |
Sbjct 2979 AGGAATACCCTCCTTGTCTTGGATCTTTGC-TTTAACATTGTCGATGGTATCTGAACTCT 2921
Query 15125 CTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || || || ||||| || || ||||||| || || ||||| ||||||||
Sbjct 2920 CAACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCAT 2869
>seq796
Length=44438
Score = 102 bits (112), Expect = 6e-17
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| || ||||| || || || || || ||||||||||| || | || |||| ||
Sbjct 19269 ACCAAGTGAAGRGTTGATTCCTTYTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCA 19210
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| || || || || | ||||| | ||| ||||| ||||| |||||||||||
Sbjct 19209 AGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 19150
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
|| ||| ||| ||| | || ||||| ||| |||| || || | ||| ||||| ||
Sbjct 19149 ATCTTGGCTTTAACATTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTT 19090
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| |||| ||| || ||||||||||||||
Sbjct 19089 CCGGTCAAAGTCTTCACAAAAATTTGCAT 19061
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
|||||||| | | | || || |||||||| || || || || ||||||||||||
Sbjct 19743 CCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGCT 19684
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
| | || | ||||| || || || || || | ||||| | ||| ||||| ||||
Sbjct 19683 AATGTCCTTCCATCTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 19624
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| ||||| ||||| ||||||| || ||| | || || || || | |||| ||
Sbjct 19623 ATACCTTCTTTGTCCTGAATTTTGGCCTTAACATTGTCAATGGTGTCAGAACTTTCCACC 19564
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | ||| || || || || |||| || || ||||| ||||||||
Sbjct 19563 TCAAGGGTGATTGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 19517
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| || |||||||| || || || || ||||| ||||| || | | |||| ||
Sbjct 19497 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTATAATCAGCAAGGGTCCGGCCGTCCTCA 19438
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| || || || || | ||||| | ||| ||||| |||||| |||||||||||
Sbjct 19437 AGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGG 19378
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
|| ||| ||| ||| | || ||||| ||| |||| || || | ||| ||||| ||
Sbjct 19377 ATCTTGGCTTTAACATTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTT 19318
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| |||| || || ||||||||||||||
Sbjct 19317 CCGGTCAAGGTCTTCACAAAAATTTGCAT 19289
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| || ||||| || || |||||||| |||||||||||| ||| | | | |||||
Sbjct 18813 ACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCGGCGAGGGTACGGCCATCTTCA 18754
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| || ||||| || | |||| | ||| ||||| ||||| |||||||||||
Sbjct 18753 AGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 18694
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
|| ||| ||| || | || || || || |||| || || | ||| ||||| ||
Sbjct 18693 ATCTTGGCTTTAACGTTGTCAATGGTGTCTGAGCTTTCCACCTCAAGGGTGATGGTCTTT 18634
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || ||||| ||||| || |||||
Sbjct 18633 CCAGTGAGGGTTTTGACAAATATCTGCAT 18605
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| || |||||||| || || || || ||||||||||| || | || |||| ||
Sbjct 19041 ACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCA 18982
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| || || || || | ||||| | ||| ||||| ||||| |||||||||||
Sbjct 18981 AGCTGCTTTCCCGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 18922
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
|| || || ||| | || || || || |||| || || | ||| ||||| ||
Sbjct 18921 ATCTTAGCCTTAACATTGTCAATGGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTTT 18862
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
||||||| |||||| || |||||||||||
Sbjct 18861 CCTGTCAAAGTTTTCACGAAAATTTGCAT 18833
>seq30006
Length=21699
Score = 95.1 bits (104), Expect = 9e-15
Identities = 139/194 (72%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 14987 CTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15045
|||| || ||||||||||| ||| ||| | | | ||||| | || || || ||| |
Sbjct 12893 CTTTCTGAATGTTGTAATCAGCT-AGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAG 12835
Query 15046 ATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATT 15105
||||| ||||| ||||| |||||| ||||||||||| ||| || ||| ||| |
Sbjct 12834 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTG 12775
Query 15106 TCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15165
|| ||||| ||||| ||| || || | || || || || || || |||||||| ||
Sbjct 12774 TCAATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 12715
Query 15166 AAAATTTGCATATT 15179
|| || ||||| ||
Sbjct 12714 AAGATCTGCATTTT 12701
>seq558
Length=67963
Score = 89.7 bits (98), Expect = 4e-13
Identities = 146/208 (70%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTG 15032
|| ||||| || || || || |||||||| || ||| || ||| | || || | ||
Sbjct 17116 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT-AGCGTTCGGCCATCCTCGAGCTG 17174
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
|| || ||| | ||||| ||||| ||||| |||||| ||||||||||| ||| ||
Sbjct 17175 CTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTT 17234
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
|| ||| | || || || || ||||| ||||||||||| || || || ||
Sbjct 17235 AGCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGT 17294
Query 15153 CAGAGTTTTTACAAAAATTTGCATATTT 15180
||| || || ||||| || ||||| |||
Sbjct 17295 CAGGGTCTTCACAAAGATCTGCATTTTT 17322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357204747812150
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