Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq545 129 6e-25 seq796 116 4e-21 seq3886 111 1e-19 seq30006 91.5 1e-13 seq558 89.7 5e-13 >seq545 Length=31085 Score = 129 bits (142), Expect = 6e-25 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| |||| || | || | || | |||||||||||||| || |||||||| | Sbjct 2184 TCCACCACGTAGACGGAGGACAAGRTGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGC 2125 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || ||| || |||||||| ||||| |||||| || ||||||||| ||||| Sbjct 2124 AAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAGG 2065 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| ||||||| | ||| | | || |||| | || | |||||| | |||||||| Sbjct 2064 AATGCCTTCCTTGT-CTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCGA 2006 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | || | || || ||||| || || || ||||| |||||||| Sbjct 2005 CCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 1957 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| |||| || | || | || | |||||||||||||| || |||||||| | Sbjct 2412 TCCACCACGTAGACGGAGGACAAGGTGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGC 2353 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || ||| || |||||||| ||||| |||||| | |||||| || || || Sbjct 2352 AAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGG 2293 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTT-GAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || |||||||| ||| ||| |||| || | |||| |||||| | ||||||| Sbjct 2292 AATACCTTCCTTGTCT-TGAATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCGA 2234 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | || | || || |||||||||||||| ||||| || ||||| Sbjct 2233 CCTCAAGAGTTATAGTCTTCCCGGTCAGAGTTTTAACAAAGATTTGCAT 2185 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| ||||| || |||||||| | | || || ||| || |||||||| ||| Sbjct 2609 GTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCA 2550 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT- 127035 || |||||| | |||||| || || || || || |||||||| ||| ||| |||| Sbjct 2549 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCT-TGAATTTTAGCTTT 2491 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | |||| |||||| | |||||||| || | || | || || ||||||||||| Sbjct 2490 GACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTCCCGGTCAGAGT 2431 Query 127096 TTTTACAAAAATCTGCAT 127113 ||| ||||| || ||||| Sbjct 2430 TTTAACAAAGATTTGCAT 2413 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | | ||| | || | ||||| ||||||||||| ||||||||||| || || Sbjct 2867 CCACCCCTCAGTCGAAGAACAAGATGTAAGGTAGACTCTTTCTGAATATTGTAGTCAGCC 2808 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || || || || || || |||||| || |||||| || ||||| Sbjct 2807 AGGGTCCTTCCATCCTCAAGTTGCTTGCCGGCAAAGATCAGTCTCTGCTGGTCTGGAGGA 2748 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| ||||| ||| | |||| || | ||| || | ||| || || Sbjct 2747 ATCCCTTCCTTGTCCTGAATTTTGGCCTTCACGTTG-TCAATGGTATCGGAACTTTCAAC 2689 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | || || || || || || || ||||| |||||||| Sbjct 2688 TTCAAGGGTGATGGTCTTTCCAGTAAGTGTCTTGACAAAGATCTGCAT 2641 Score = 107 bits (118), Expect = 2e-18 Identities = 146/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||| ||||| |||||||| ||| ||| | ||| || || || |||||| Sbjct 3065 GTTGATTCTTTCTGAATGTTGTAATCTGCCAACGTCCTTCCATCCTCAAGTTGCTTTCCA 3006 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||||| |||||| || ||||| || ||||||||||| ||| || ||||| Sbjct 3005 GCAAAGATCAATCTCTGCTGGTCTGGAGGAATACCCTCCTTGTCTTGGATCTT-TGCTTT 2947 Query 127037 A--GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 | ||| |||| ||| || | |||||| || || | || | || || || |||| | Sbjct 2946 AACATTG-TCGATGGTATCTGAACTCTCAACCTCCAAAGTAATTGTCTTCCCTGTCAATG 2888 Query 127095 TTTTTACAAAAATCTGCATG 127114 | || ||||| || |||||| Sbjct 2887 TCTTGACAAATATTTGCATG 2868 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 || |||||||||| ||| | || ||||| || || || ||||| || | | || | Sbjct 3314 AAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTC 3255 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 || || || ||||| ||||| ||||||| ||||| || || || || || |||||| Sbjct 3254 CCRTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCC 3195 Query 127016 TTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 |||| | ||| | | ||| || | | || | ||| || | |||||| || || | || Sbjct 3194 TTGT-CTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGT 3136 Query 127075 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || || || |||| ||| || |||||||| |||||| Sbjct 3135 AATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 3096 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 || |||||||||| ||| | || ||||| || || || ||||| || | | || | Sbjct 3542 AAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTC 3483 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 || || || ||||| ||||| ||||||| ||||| || || || || || |||||| Sbjct 3482 CCRTCCTCAAGWTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCC 3423 Query 127016 TTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 |||| | ||| | | ||| || | | || | ||| || | |||||| || || | || Sbjct 3422 TTGT-CTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGT 3364 Query 127075 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || || || |||| ||| || ||||| |||||||| Sbjct 3363 GATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 3325 >seq796 Length=44438 Score = 116 bits (128), Expect = 4e-21 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | |||||| || | || |||||||||||||| ||||||||| | Sbjct 18832 TCCACCACGAAGACGGAGCACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCGGC 18773 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || ||| || ||||| || || || |||||| | |||||| || || || Sbjct 18772 GAGGGTACGGCCATCTTCAAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGGGGG 18713 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCG 127063 ||||| ||||||||| ||| || |||| | |||| || | |||||| | || || Sbjct 18712 AATGCCTTCCTTGTCCTGGATCTT-GGCTTTAACGTTG-TCAATGGTGTCTGAGCTTTCC 18655 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | || || || || || ||||| ||||| |||||||| Sbjct 18654 ACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTTTTGACAAATATCTGCAT 18605 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| ||||| || ||||| || ||| || | ||| || ||||| || || Sbjct 20169 GTAGACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGCTGCTTCCCT 20110 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| || |||||| || || || || |||||||||||| || || ||| Sbjct 20109 GCAAAGATCAGTCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGAATCTTAGCCTTC 20050 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||| || | |||||| || || | || | ||||| || |||| || Sbjct 20049 ACATTGTCAATGGTATCAGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTCAAGGTC 19990 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 19989 TTCACAAAAATCTGCAT 19973 >seq3886 Length=20373 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || |||||||| || | | ||||| ||| || ||||| || ||| Sbjct 12801 GTAGACTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCA 12860 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 ||| ||||||| | |||||| || || || || |||||||||||| ||| | | || || Sbjct 12861 GCGAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCC-TGAATCTTAGCTTT 12919 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | |||| |||||| | |||||| || || | || | || || ||||||| || Sbjct 12920 CACATTGTCGATGGTGTCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCGGTCAAGGT 12979 Query 127096 TTTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 12980 CTTCACAAAGATCTGCAT 12997 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || ||||| ||||| || ||||| || ||| ||||| ||| || Sbjct 13016 CACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGCCAAAGTGCGGCCATCCTC 13075 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || ||||| | ||||| | |||||| || || || || ||||||||||| Sbjct 13076 GAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTG 13135 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||||| | || | |||||| | ||||| || || | ||| | ||||| Sbjct 13136 GATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTTTT 13195 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || || || ||||| || ||||| Sbjct 13196 CCCGGTAAGGGTCTTAACAAAGATTTGCAT 13225 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | | ||||| || || ||||| || ||| Sbjct 13257 GTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCA 13316 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| | |||||| || || || || |||||||||||| ||| || ||| Sbjct 13317 GCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTA 13376 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | || || || || | || | || || ||||| || || Sbjct 13377 ACATTATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTC 13436 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 13437 TTCACAAAAATCTGCAT 13453 >seq30006 Length=21699 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 126908 AAATGTATCGTAGACT---CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||| |||| || ||| |||| ||||| |||||||| | | || || ||| || Sbjct 12911 AAATTTATC-TATACTTACCTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCG 12853 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| ||||| ||| |||||||||||||||| || || || || || ||||||| | || Sbjct 12852 AGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGT-CTTG 12794 Query 127025 ATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 | | | || |||| | || | ||||| | || ||||| | || | ||| || Sbjct 12793 AATCTTAGCTTTGACATTGTCAATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGTCTT 12734 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || |||||||| || || |||||||| Sbjct 12733 CCCCGTAAGAGTTTTCACGAAGATCTGCAT 12704 >seq558 Length=67963 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | | ||| || ||| || ||||| || || Sbjct 17122 GTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCG 17181 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||||||||||||| || || || ||||| |||||||| || || ||| Sbjct 17182 GCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTA 17241 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || || | ||| | || ||||| ||||| || Sbjct 17242 ACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGTC 17301 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 17302 TTCACAAAGATCTGCAT 17318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475245277757600