Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq545 129 6e-25
seq796 116 4e-21
seq3886 111 1e-19
seq30006 91.5 1e-13
seq558 89.7 5e-13
>seq545
Length=31085
Score = 129 bits (142), Expect = 6e-25
Identities = 167/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
|||||| |||| || | || | || | |||||||||||||| || |||||||| |
Sbjct 2184 TCCACCACGTAGACGGAGGACAAGRTGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGC 2125
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
| || || ||| || |||||||| ||||| |||||| || ||||||||| |||||
Sbjct 2124 AAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAGG 2065
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064
||||| ||||||| | ||| | | || |||| | || | |||||| | ||||||||
Sbjct 2064 AATGCCTTCCTTGT-CTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCGA 2006
Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| || | || | || || ||||| || || || ||||| ||||||||
Sbjct 2005 CCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 1957
Score = 122 bits (134), Expect = 8e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
|||||| |||| || | || | || | |||||||||||||| || |||||||| |
Sbjct 2412 TCCACCACGTAGACGGAGGACAAGGTGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGC 2353
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
| || || ||| || |||||||| ||||| |||||| | |||||| || || ||
Sbjct 2352 AAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGG 2293
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTT-GAGTTGTTCGACGGTGTCCGTACTCTCGA 127064
|| || |||||||| ||| ||| |||| || | |||| |||||| | |||||||
Sbjct 2292 AATACCTTCCTTGTCT-TGAATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCGA 2234
Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| || | || | || || |||||||||||||| ||||| || |||||
Sbjct 2233 CCTCAAGAGTTATAGTCTTCCCGGTCAGAGTTTTAACAAAGATTTGCAT 2185
Score = 111 bits (122), Expect = 1e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| ||||| || |||||||| | | || || ||| || |||||||| |||
Sbjct 2609 GTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCA 2550
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT- 127035
|| |||||| | |||||| || || || || || |||||||| ||| ||| ||||
Sbjct 2549 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCT-TGAATTTTAGCTTT 2491
Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
|| | |||| |||||| | |||||||| || | || | || || |||||||||||
Sbjct 2490 GACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTCCCGGTCAGAGT 2431
Query 127096 TTTTACAAAAATCTGCAT 127113
||| ||||| || |||||
Sbjct 2430 TTTAACAAAGATTTGCAT 2413
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| | | ||| | || | ||||| ||||||||||| ||||||||||| || ||
Sbjct 2867 CCACCCCTCAGTCGAAGAACAAGATGTAAGGTAGACTCTTTCTGAATATTGTAGTCAGCC 2808
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || | ||| || || || || || || |||||| || |||||| || |||||
Sbjct 2807 AGGGTCCTTCCATCCTCAAGTTGCTTGCCGGCAAAGATCAGTCTCTGCTGGTCTGGAGGA 2748
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| || ||||||||| ||||| ||| | |||| || | ||| || | ||| || ||
Sbjct 2747 ATCCCTTCCTTGTCCTGAATTTTGGCCTTCACGTTG-TCAATGGTATCGGAACTTTCAAC 2689
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| | ||| | || || || || || || || ||||| ||||||||
Sbjct 2688 TTCAAGGGTGATGGTCTTTCCAGTAAGTGTCTTGACAAAGATCTGCAT 2641
Score = 107 bits (118), Expect = 2e-18
Identities = 146/200 (73%), Gaps = 4/200 (2%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| || ||||| ||||| |||||||| ||| ||| | ||| || || || ||||||
Sbjct 3065 GTTGATTCTTTCTGAATGTTGTAATCTGCCAACGTCCTTCCATCCTCAAGTTGCTTTCCA 3006
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| ||||||||| |||||| || ||||| || ||||||||||| ||| || |||||
Sbjct 3005 GCAAAGATCAATCTCTGCTGGTCTGGAGGAATACCCTCCTTGTCTTGGATCTT-TGCTTT 2947
Query 127037 A--GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094
| ||| |||| ||| || | |||||| || || | || | || || || |||| |
Sbjct 2946 AACATTG-TCGATGGTATCTGAACTCTCAACCTCCAAAGTAATTGTCTTCCCTGTCAATG 2888
Query 127095 TTTTTACAAAAATCTGCATG 127114
| || ||||| || ||||||
Sbjct 2887 TCTTGACAAATATTTGCATG 2868
Score = 95.1 bits (104), Expect = 1e-14
Identities = 154/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955
|| |||||||||| ||| | || ||||| || || || ||||| || | | || |
Sbjct 3314 AAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTC 3255
Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015
|| || || ||||| ||||| ||||||| ||||| || || || || || ||||||
Sbjct 3254 CCRTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCC 3195
Query 127016 TTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074
|||| | ||| | | ||| || | | || | ||| || | |||||| || || | ||
Sbjct 3194 TTGT-CTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGT 3136
Query 127075 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
| || || || |||| ||| || |||||||| ||||||
Sbjct 3135 AATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 3096
Score = 93.3 bits (102), Expect = 4e-14
Identities = 153/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955
|| |||||||||| ||| | || ||||| || || || ||||| || | | || |
Sbjct 3542 AAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTC 3483
Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015
|| || || ||||| ||||| ||||||| ||||| || || || || || ||||||
Sbjct 3482 CCRTCCTCAAGWTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCC 3423
Query 127016 TTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074
|||| | ||| | | ||| || | | || | ||| || | |||||| || || | ||
Sbjct 3422 TTGT-CTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGT 3364
Query 127075 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| || || || |||| ||| || ||||| ||||||||
Sbjct 3363 GATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 3325
>seq796
Length=44438
Score = 116 bits (128), Expect = 4e-21
Identities = 166/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
|||||| || | || | |||||| || | || |||||||||||||| ||||||||| |
Sbjct 18832 TCCACCACGAAGACGGAGCACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCGGC 18773
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
| || || ||| || ||||| || || || |||||| | |||||| || || ||
Sbjct 18772 GAGGGTACGGCCATCTTCAAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGGGGG 18713
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCG 127063
||||| ||||||||| ||| || |||| | |||| || | |||||| | || ||
Sbjct 18712 AATGCCTTCCTTGTCCTGGATCTT-GGCTTTAACGTTG-TCAATGGTGTCTGAGCTTTCC 18655
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || | ||| | || || || || || ||||| ||||| ||||||||
Sbjct 18654 ACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTTTTGACAAATATCTGCAT 18605
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|||||||| ||||| || ||||| || ||| || | ||| || ||||| || ||
Sbjct 20169 GTAGACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGCTGCTTCCCT 20110
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||||| || |||||| || || || || |||||||||||| || || |||
Sbjct 20109 GCAAAGATCAGTCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGAATCTTAGCCTTC 20050
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | || | ||| || | |||||| || || | || | ||||| || |||| ||
Sbjct 20049 ACATTGTCAATGGTATCAGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTCAAGGTC 19990
Query 127097 TTTACAAAAATCTGCAT 127113
|| ||||||||||||||
Sbjct 19989 TTCACAAAAATCTGCAT 19973
>seq3886
Length=20373
Score = 111 bits (122), Expect = 1e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|||||||| || || |||||||| || | | ||||| ||| || ||||| || |||
Sbjct 12801 GTAGACTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCA 12860
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035
||| ||||||| | |||||| || || || || |||||||||||| ||| | | || ||
Sbjct 12861 GCGAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCC-TGAATCTTAGCTTT 12919
Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| | |||| |||||| | |||||| || || | || | || || ||||||| ||
Sbjct 12920 CACATTGTCGATGGTGTCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCGGTCAAGGT 12979
Query 127096 TTTTACAAAAATCTGCAT 127113
|| ||||| ||||||||
Sbjct 12980 CTTCACAAAGATCTGCAT 12997
Score = 109 bits (120), Expect = 5e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963
|||||| || | || ||||| ||||| || ||||| || ||| ||||| ||| ||
Sbjct 13016 CACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGCCAAAGTGCGGCCATCCTC 13075
Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023
||||| || ||||| | ||||| | |||||| || || || || |||||||||||
Sbjct 13076 GAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTG 13135
Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083
||| || ||||| | || | |||||| | ||||| || || | ||| | |||||
Sbjct 13136 GATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTTTT 13195
Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||||| || || || ||||| || |||||
Sbjct 13196 CCCGGTAAGGGTCTTAACAAAGATTTGCAT 13225
Score = 98.7 bits (108), Expect = 9e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| ||| | | ||||| || || ||||| || |||
Sbjct 13257 GTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCA 13316
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| ||||||| | |||||| || || || || |||||||||||| ||| || |||
Sbjct 13317 GCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTA 13376
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | || | |||||| | || || || || | || | || || ||||| || ||
Sbjct 13377 ACATTATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTC 13436
Query 127097 TTTACAAAAATCTGCAT 127113
|| ||||||||||||||
Sbjct 13437 TTCACAAAAATCTGCAT 13453
>seq30006
Length=21699
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/210 (71%), Gaps = 6/210 (3%)
Strand=Plus/Minus
Query 126908 AAATGTATCGTAGACT---CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964
|||| |||| || ||| |||| ||||| |||||||| | | || || ||| ||
Sbjct 12911 AAATTTATC-TATACTTACCTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCG 12853
Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024
||||| ||||| ||| |||||||||||||||| || || || || || ||||||| | ||
Sbjct 12852 AGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGT-CTTG 12794
Query 127025 ATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083
| | | || |||| | || | ||||| | || ||||| | || | ||| ||
Sbjct 12793 AATCTTAGCTTTGACATTGTCAATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGTCTT 12734
Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || |||||||| || || ||||||||
Sbjct 12733 CCCCGTAAGAGTTTTCACGAAGATCTGCAT 12704
>seq558
Length=67963
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| || | | ||| || ||| || ||||| || ||
Sbjct 17122 GTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCG 17181
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | |||||||||||||| || || || ||||| |||||||| || || |||
Sbjct 17182 GCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTA 17241
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | || | |||||| | ||| || || | ||| | || ||||| ||||| ||
Sbjct 17242 ACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGTC 17301
Query 127097 TTTACAAAAATCTGCAT 127113
|| ||||| ||||||||
Sbjct 17302 TTCACAAAGATCTGCAT 17318
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475245277757600
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