Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq796 113 4e-20 seq16835 109 5e-19 seq545 102 7e-17 seq3956 100 3e-16 seq3886 98.7 9e-16 seq30006 93.3 4e-14 seq572 93.3 4e-14 seq558 89.7 5e-13 >seq796 Length=44438 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | |||||||||||| ||||| || ||||||||||| || ||||| |||||| Sbjct 19974 ATACCTCCCCTGAGCCTCAACACAAGATGAAGGGTTGATTCCTTCTGAATATTGTAATCG 19915 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| ||||| || || || || | ||||| | ||||||||| || Sbjct 19914 GCTAATGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAACCTTTGCTGGTCTGGT 19855 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || ||||| || ||||| || || | || | || | ||||||||| || Sbjct 19854 GGGATACCCTCTTTGTCCTGAATCTTGGCCTTTA-CGTTGTCAATGGTGTCGGAGCTTTC 19796 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| || ||||| || | || || || || |||||||| Sbjct 19795 CACCTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 19745 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | | ||| | || || ||||||||||| ||||| || ||||| Sbjct 19290 ATTCCACCACGAAGACGGAGCACCAAGTGAAGRGTTGATTCCTTYTGGATGTTGTAATCA 19231 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || || | || ||||| || | ||||||| |||||||| || Sbjct 19230 GCAAGGGTCCTGCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGG 19171 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || || || || || ||| | || | |||||||| || Sbjct 19170 GGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACATTGTCAATAGTGTCGGAGCTTTCA 19111 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || || ||||| | ||| || |||||||||||||| Sbjct 19110 ACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAAATTTGCAT 19061 >seq16835 Length=8075 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| ||||| || || || ||||| ||||| || || ||| Sbjct 6875 CCACCACGGAGACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCA 6934 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| || | || ||||| ||| | ||||| || |||||||| || ||| Sbjct 6935 AGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGA 6994 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || || || || || ||||| || | ||||||||||||||| || Sbjct 6995 ATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACC 7054 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | ||| || || ||||| ||||| || || || |||||| Sbjct 7055 TCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 7102 >seq545 Length=31085 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || ||||||||||| || ||||| | ||| ||| || Sbjct 2621 ACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCA 2562 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||| || || | |||| | |||||||| || ||||| ||||| || |||||| Sbjct 2561 AGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGA 2502 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| ||||| || | |||||| || |||||| || ||||| | || || Sbjct 2501 ATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTC 2442 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| |||||||| ||||| |||||||| Sbjct 2441 CCGGTCAGAGTTTTAACAAAGATTTGCAT 2413 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | | || || || || || || || |||||||| || ||||| Sbjct 2414 ATTCCACCACGTAGACGGAGGACAAGGTGAAGGGTAGACTCTTTTTGGATGTTGTAATCA 2355 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | ||||| || || | |||| | |||||||| || Sbjct 2354 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGG 2295 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || ||||||||||| ||||| || | |||||| || |||| Sbjct 2294 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCG 2235 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | || || ||||| |||||||| ||||| |||||||| Sbjct 2234 ACCTCAAGAGTTATAGTCTTCCCGGTCAGAGTTTTAACAAAGATTTGCAT 2185 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | | || || || || || || || |||||||| || ||||| Sbjct 2186 ATTCCACCACGTAGACGGAGGACAAGRTGAAGGGTAGACTCTTTTTGGATGTTGTAATCA 2127 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | ||||| || || | |||| || ||||| || || Sbjct 2126 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGA 2067 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || |||||||| || ||||| || | |||||| ||| |||| Sbjct 2066 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCG 2007 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || ||||| | || || ||||| || || || ||||| || |||||| Sbjct 2006 ACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCATC 1956 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 |||||| ||||| || ||||| ||||| ||||| || || || | || | || Sbjct 3309 CAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCCRTC 3250 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 || | |||||| || || | ||||| || || ||||| || ||||| || || || || Sbjct 3249 CTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTGTC 3190 Query 45248 TTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 |||||| ||| ||| | || | ||| || ||| ||| || || | |||| || Sbjct 3189 TTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGTAATTGT 3130 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | ||| || |||||||||||||| Sbjct 3129 CTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 3097 >seq3956 Length=148667 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| | || ||||| || ||||| | || || |||||||| ||||| ||||| Sbjct 117756 CCTCCACAAAGACTCAAGACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAGCA 117815 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | | ||| | ||||||||||| | |||| |||| ||| || || | ||| Sbjct 117816 AGTGTATGATCATCCTTAAATTGTTTTCCACCATATACTAATCTTTGTTGATCTGAGGGA 117875 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || |||||||| |||| ||| ||| ||| | || | || || || | || || Sbjct 117876 ATTCCTTCTTTGTCTTCAATCTTTGCTTTAACATTGTCAATGGAGTTGGTACTCTTCACA 117935 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||||| || || || | |||||||| ||||| ||||||||| Sbjct 117936 TCCAGAGTAATGGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCATC 117983 >seq3886 Length=20373 Score = 98.7 bits (108), Expect = 9e-16 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169 || || || ||||| | | ||| | ||| || || || ||||| ||||| || || || Sbjct 13680 ATACCACCACGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 13739 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 ||| | ||| ||| ||||| || |||||||| | ||||| | |||||||| || Sbjct 13740 GCT-AGGGTGCGGCCATCTTCCAACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGG 13798 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACT 45288 ||||||||||| ||||| || || || |||| || | || | |||||| || | Sbjct 13799 GGGAATGCCTTCCTTATCCTGGATCTTAGCCTTGA-CGTTGTCAATGGTGTCTGAGCTTT 13857 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || || |||| ||| || || || ||||| || || || || ||||| Sbjct 13858 CGACCTCAAGGGTAATCGTCTTACCCGTAAGAGTCTTCACGAAGATCTGCAT 13909 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||||| | ||| | ||||| || || ||||||||||| || || || Sbjct 12996 ATTCCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCC 13055 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | || || || || | ||||| | |||||||| || Sbjct 13056 GCCAAAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGG 13115 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || || ||||| || || |||| || | ||||||||| ||| Sbjct 13116 GGAATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCA 13175 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||||| ||||| || || || ||||| |||||||| Sbjct 13176 ACCTCCAGGGTGATGGTTTTCCCGGTAAGGGTCTTAACAAAGATTTGCAT 13225 >seq30006 Length=21699 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || ||||| ||| | |||||||| ||||||||||| ||||| ||||| || |||||||| Sbjct 12849 TGCTTTCCGGCGAAGATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATC 12790 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 || ||||| || | |||||| || || ||||| || || | ||| || || Sbjct 12789 TTAGCTTTGACATTGTCAATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCC 12730 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||| || || || ||||| Sbjct 12729 GTAAGAGTTTTCACGAAGATCTGCAT 12704 >seq572 Length=122185 Score = 93.3 bits (102), Expect = 4e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 ||||||| | |||||||| || || || || |||||||| || || || || ||||| Sbjct 87944 TTCCTCCCCTGAGCCTCAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAG 88003 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || |||| | ||| ||||| |||||||| || | |||| || ||||| || || | Sbjct 88004 CGAGGGTTCTCCCATCTTCCAACTGTTTTCCAGCAAAAATCAGTCTCTGCTGATCAGGAG 88063 Query 45232 GAATGCCTTCTTTATCTTG 45250 | |||||||||||||| || Sbjct 88064 GTATGCCTTCTTTATCCTG 88082 >seq558 Length=67963 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCT 45172 || || ||||| | | || || || || || || ||||| ||||| || || || ||| Sbjct 17092 CCACCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 17151 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 || || ||| || | || || || ||| | |||||||| |||||||| || || Sbjct 17152 AGCG-TTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGG 17210 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 ||||||||| || |||||||| || || | || | |||||| || ||||| || Sbjct 17211 AATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTAC 17270 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | |||| || ||||| || || || || ||||| || ||||| Sbjct 17271 CTCTAAGGTAATAGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 17318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451760304780400