Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq15443 82.4 9e-11
>seq15443
Length=42915
Score = 82.4 bits (90), Expect = 9e-11
Identities = 193/286 (67%), Gaps = 8/286 (3%)
Strand=Plus/Plus
Query 12704 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 12763
|||||| || ||||| | || | || |||||| ||||| || || || |||||
Sbjct 29415 ATCAAATCGTCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 29474
Query 12764 GATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 12823
| || | || || || | ||||| |||||||| |||||||| ||||| || |
Sbjct 29475 AACAACTATTATACCAGTATTTCCTTCGAAACCATCCATTTCAGTCAATAGTTGGTTCAG 29534
Query 12824 GGTTTGTTCACGTTCATCATT--CGCGGGCA-TACCACCCGCACTGCGTTGCTTACCGAC 12880
||| ||||| | ||||||||| | | || | ||| | | || |||| || ||
Sbjct 29535 GGTCTGTTCCCTTTCATCATTTCCTCCTCCAATTCCAGTCCCTCT---TTGCCGCCCAAC 29591
Query 12881 GGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAA-CTTCAAAGA 12939
|| |||||||| |||| || || || || || |||||| ||| ||| ||| |
Sbjct 29592 AGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAA-A 29650
Query 12940 TATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985
||| || |||| ||| || ||||| ||||||||||| || ||
Sbjct 29651 GATCACGGACTCGAGAGGCTCCAACACCAACAAACATCTCAACGAA 29696
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613177516568400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |