Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq3886 123 3e-23
seq30006 120 3e-22
seq16835 116 4e-21
seq558 116 4e-21
seq545 98.7 1e-15
seq796 93.3 5e-14
>seq3886
Length=20373
Score = 123 bits (136), Expect = 3e-23
Identities = 156/213 (73%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||||| |||| || |||||||||||| |||||||| | | |||||| | || ||
Sbjct 13016 CACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGCCAAAGTGCGGCCATCCTC 13075
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
|||||||||||| || || ||||| | ||||||||| | || | | |||||||||
Sbjct 13076 GAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTG 13135
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560
|||||| ||||| | | | ||||| |||| || || |||| ||||||||
Sbjct 13136 GATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTC---TCAACCTCCAGGGTGATGGT 13192
Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| || || || || |||||||||||||||||
Sbjct 13193 TTTCCCGGTAAGGGTCTTAACAAAGATTTGCAT 13225
Score = 116 bits (128), Expect = 4e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||||| || ||||| |||| ||||||||||| || |||||
Sbjct 13262 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAA 13321
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| | ||||||||| | || | | |||||||||| |||||| ||| | |
Sbjct 13322 GATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATT 13381
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | |||||| |||||| |||| |||||||| || || || || || || ||
Sbjct 13382 ATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTCAC 13441
Query 46582 AAAGATTTGCAT 46593
||| || |||||
Sbjct 13442 AAAAATCTGCAT 13453
Score = 111 bits (122), Expect = 2e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||| | ||| |||||| ||||| |||||||| | || ||||| | || |||
Sbjct 13473 ACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCTAAGGTGCGGCCATCCTCG 13532
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|||||||| || ||||| ||||| | ||||||||| | || | | ||||| ||| |
Sbjct 13533 AGCTGCTTCCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGGATCCCTTCCTTATCCTGG 13592
Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
||||| ||| | ||| | | | |||||| |||||| |||| |||||||| ||
Sbjct 13593 ATCTTAGCCTTCA-CGTTGTCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTT 13651
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || || || ||||| ||||| |||||
Sbjct 13652 TCCGGTAAGAGTCTTAACGAAGATCTGCAT 13681
Score = 104 bits (114), Expect = 3e-17
Identities = 154/215 (72%), Gaps = 10/215 (5%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| || |||| ||| |||||| |||||||||||||| | || ||||| | || ||
Sbjct 12789 ACAAGGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCA 12848
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|||||||| || ||||| ||||| | ||||||||| | || | | ||||||||||
Sbjct 12849 AGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGA 12908
Query 46505 ATCTT--CTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGG 46559
||||| ||| | |||| | ||||| ||| ||||| |||| |||||||
Sbjct 12909 ATCTTAGCTTTCACATTGTCG--ATGGTGTCAGAACTC---TCCACCTCCAAAGTGATGG 12963
Query 46560 TTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
| || || |||| || || |||||||| ||||||
Sbjct 12964 TCTTCCCGGTCAAGGTCTTCACAAAGATCTGCATT 12998
>seq30006
Length=21699
Score = 120 bits (132), Expect = 3e-22
Identities = 148/201 (74%), Gaps = 1/201 (0%)
Strand=Plus/Minus
Query 46398 TACTCTCCTTT-TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456
|||| ||||| || || ||||| || | |||||| || | || ||||||||||| |||
Sbjct 12900 TACTTACCTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCG 12841
Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516
||||| ||||| ||||||||||| | || | | |||||||| ||||| |||
Sbjct 12840 GCGAAGATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTG 12781
Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576
| | | | |||||||| ||||| || || | |||||| || || ||||| || |||
Sbjct 12780 ACATTGTCAATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTT 12721
Query 46577 TTAACAAAGATTTGCATTTTG 46597
|| || ||||| |||||||||
Sbjct 12720 TTCACGAAGATCTGCATTTTG 12700
>seq16835
Length=8075
Score = 116 bits (128), Expect = 4e-21
Identities = 157/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||| ||||| | || |||||| ||||| |||||||||| ||||| || |
Sbjct 6886 ACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACC 6945
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || |||||||| |||||||| ||||| ||||||||||| | || | | |||||
Sbjct 6946 ATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTT 7005
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|||| |||||| |||| | | | |||||| || || || || | |||||
Sbjct 7006 GTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGAT 7065
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596
|| || ||||| || ||||| || ||||| ||||| ||
Sbjct 7066 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 7104
>seq558
Length=67963
Score = 116 bits (128), Expect = 4e-21
Identities = 145/199 (73%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| | ||| || || | || ||||||||||| ||||||||
Sbjct 17127 CTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAA 17186
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| ||||||||||| | || | || |||||||| ||||| ||| | |
Sbjct 17187 AATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATT 17246
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | ||||| || || || || | || || || ||||||||||| || || ||
Sbjct 17247 GTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGTCTTCAC 17306
Query 46582 AAAGATTTGCATTTTGCAC 46600
|||||| |||||||| |||
Sbjct 17307 AAAGATCTGCATTTTTCAC 17325
>seq545
Length=31085
Score = 98.7 bits (108), Expect = 1e-15
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|||||||| ||||||||||||||||| | || |||||| ||||| |||||||| |
Sbjct 3551 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 3492
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
||||| | | | || || || || || || || || ||||| ||||| ||||| | ||
Sbjct 3491 AGAGTCCTCCCRTCCTCAAGWTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 3432
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA--TTCCA 46544
| | ||||||||| ||||| | ||| | | | || | || || | || |
Sbjct 3431 ATACCCTCCTTGTCTTGAATCTT-TGCTTTCACATTGTCAATG-GTATCTGAACTCTCAA 3374
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| |||| ||||| || || || |||| || || |||||||| |||||
Sbjct 3373 CCTCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 3325
Score = 95.1 bits (104), Expect = 1e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|||||||| ||||||||||||||||| | || |||||| ||||| |||||||| |
Sbjct 3323 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 3264
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
||||| | | | || || || || || || || || ||||| ||||| ||||| | ||
Sbjct 3263 AGAGTCCTCCCRTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 3204
Query 46487 ACGCTCTCCTTGTC 46500
| | |||||||||
Sbjct 3203 ATACCCTCCTTGTC 3190
>seq796
Length=44438
Score = 93.3 bits (102), Expect = 5e-14
Identities = 148/207 (71%), Gaps = 9/207 (4%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
||| ||||| || ||||| |||| || || || | || || ||||||||||| || ||
Sbjct 18796 CTCTTTTTGAATGTTGTAATCGGCGAGGGTACGGCCATCTTCAAGCTGCTTGCCCGCAAA 18737
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| | ||||||||| | || | || ||||||||| |||||| ||| | |||
Sbjct 18736 GATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTT-GGCTTTAACGT 18678
Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577
| | | ||||| ||| |||||| || | |||||||| || || || || ||||
Sbjct 18677 TGTCAATGGTGTCTGAGCT---TTCCACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTTT 18621
Query 46578 TAACAAAGATTTGCAT-TTTGCACAAA 46603
| ||||| || ||||| | | ||||||
Sbjct 18620 TGACAAATATCTGCATCTGTACACAAA 18594
Score = 82.4 bits (90), Expect = 9e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| || | | |||||| ||||| | || ||||| || |||||||| |||| |
Sbjct 19971 CCTCCCCTGAGCCTCAACACAAGATGAAGGGTTGATTCCTTCTGAATATTGTAATCGGCT 19912
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| || | | || || | ||||||||| || || ||||| | |||||||| | ||
Sbjct 19911 AATGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGG 19852
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCGATTCCAC 46545
| | ||| |||||| ||||| ||| | ||| | || | ||||| ||||||
Sbjct 19851 ATACCCTCTTTGTCCTGAATCTTGGCCTTTA-CGTTGTCAATGGTGTCGGAGCTTTCCAC 19793
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|| | || || || ||||| |||| || || || ||||||||||||
Sbjct 19792 CTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATT 19744
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 564934655014800
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