Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq3886 84.2 2e-11 >seq3886 Length=20373 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | ||| || || || || || || || || Sbjct 13683 CCACCACGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 13742 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| ||||| || || || |||| || || | |||||| || | ||| Sbjct 13743 AGGGTGCGGCCATCTTCCAACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGA 13802 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCAC 39671 | |||||| || || || || || | ||| | | || |||||| |||||| || Sbjct 13803 ATGCCTTCCTTATCCTGGATCTTAGCCTTGA-CGTTGTCAATGGTGTCTGAGCTTTCGAC 13861 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||||| || |||||||| | ||| || |||||||||||||| Sbjct 13862 CTCAAGGGTAATCGTCTTACCCGTAAGAGTCTTCACGAAGATCTGCAT 13909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347187598954670