Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq15443 127 3e-24 seq191 118 1e-21 >seq15443 Length=42915 Score = 127 bits (140), Expect = 3e-24 Identities = 309/456 (68%), Gaps = 18/456 (4%) Strand=Plus/Plus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| || ||||| | || | || ||||| ||||| | ||||| ||||| || Sbjct 29415 ATCAAATCGTCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 29474 Query 15947 GATGACAACAATACCTGT--TTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 | || | ||||| || ||| || | ||||||||||| || ||||| || ||||| Sbjct 29475 AACAACTATTATACCAGTATTTCCTT--CGAAACCATCCATTTCAGTCAATAGTTGGTTC 29532 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 16062 | || ||||||| ||||||||| || | | | | |||| | | |||| || | Sbjct 29533 AGGGTCTGTTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 29590 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTT-CGCGAGCGACTTCAAAG 16121 | |||||||| ||||||| || || ||||| || ||||| | | | ||| ||| Sbjct 29591 CAGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAA- 29649 Query 16122 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 16181 ||||| || || || ||| || ||||||||||||||||| || || | || | ||| Sbjct 29650 AGATCACGGACTCGAGAGGCTCCAACACCAACAAACATCTCAACGAATTCTGAACCTGAA 29709 Query 16182 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240 |||| || || || ||| | |||||| ||||| || || || | || || || Sbjct 29710 -ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAAGGTTTTCCC 29768 Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT-CTTGGCGCCACTTCCAAAGT 16299 ||||| || ||| | || || ||||| |||||| | | | ||||| | ||| Sbjct 29769 AGTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAATACGAGCCCCCACTGC---AGT 29825 Query 16300 --ATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 ||||||| |||| ||| | ||| || || | ||| Sbjct 29826 AAATCTCTCGGGTTTCTTCAAAAATTCTACGACCTC 29861 >seq191 Length=31611 Score = 118 bits (130), Expect = 1e-21 Identities = 197/279 (71%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || |||||||| || ||||||||||| |||||||| || |||| |||||||| | Sbjct 21879 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCACCT 21820 Query 16035 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 | ||| |||| | |||| ||||||| ||||||||||||||||| || || || || Sbjct 21819 CCAAGACCTGCACCTCTTTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATACAA 21760 Query 16095 GGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACACC 16150 || ||||| | || ||||| | ||||| || || || | || |||||||| Sbjct 21759 GG--CGCTTTCGACTTTGCCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCTCCCACACC 21704 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 16210 ||||||| ||| ||||| | || || | ||| || || || ||| || ||||| Sbjct 21703 CACAAACAACTCAACAAACTCTGACGCTGCACAAGAGAAAAATGGCACACCAGCCTCACC 21644 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || | |||| || | ||| ||||| || |||||||| Sbjct 21643 AGCTACTGCTCTAGCTAAAAGGGTCTTTCCAGTACCTGG 21605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620408828552800