Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq191 127 2e-24
seq15443 123 3e-23
seq30480 89.7 6e-13
seq23166 86.0 7e-12
seq728 86.0 7e-12
>seq191
Length=31611
Score = 127 bits (140), Expect = 2e-24
Identities = 196/280 (70%), Gaps = 10/280 (4%)
Strand=Plus/Minus
Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341
|| |||||||| || |||||||| || |||||||| || |||| |||||||| |
Sbjct 21879 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCACCT 21820
Query 9342 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401
| ||| |||| | |||| ||||||| ||||||||||||||||| || ||||||||
Sbjct 21819 CCAAGACCTGCACCTCTTTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATACAA 21760
Query 9402 GG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456
|| | || ||| || | ||||| | ||| | ||| || || |||||||
Sbjct 21759 GGCGCTTTCGACTTT-----GCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCCCACAC 21705
Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9516
| ||||||| ||| ||||| | || || | ||| || || || ||| || ||||
Sbjct 21704 CCACAAACAACTCAACAAACTCTGACGCTGCACAAGAGAAAAATGGCACACCAGCCTCAC 21645
Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556
| || | |||| || | ||| ||||| || ||||||||
Sbjct 21644 CAGCTACTGCTCTAGCTAAAAGGGTCTTTCCAGTACCTGG 21605
>seq15443
Length=42915
Score = 123 bits (136), Expect = 3e-23
Identities = 306/455 (67%), Gaps = 16/455 (4%)
Strand=Plus/Plus
Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253
|||||| || ||||| | || | || ||||| ||||| | ||||| || || ||
Sbjct 29415 ATCAAATCGTCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 29474
Query 9254 GATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311
| || | ||||| || ||| || | ||||||||||| || ||||| ||||||||
Sbjct 29475 AACAACTATTATACCAGTATTTCCTT--CGAAACCATCCATTTCAGTCAATAGTTGGTTC 29532
Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9369
| || ||||||| ||||||||| || | | | | |||| | | |||| || |
Sbjct 29533 AGGGTCTGTTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 29590
Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 9429
| |||||||| ||||||| || ||||| || || |||||| ||| | | || |
Sbjct 29591 CAGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAAA 29650
Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9489
|||| || || | ||| || ||||||||||||||||| || || | || | |||
Sbjct 29651 GATCACGGACTCGAGAGGCTCCAACACCAACAAACATCTCAACGAATTCTGAACCTGAA- 29709
Query 9490 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548
|||| || || || ||| | |||||| ||||| || || || | || || ||
Sbjct 29710 ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAAGGTTTTCCCA 29769
Query 9549 GTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAAT-CTTGGCGCCACTTCCAAAGT- 9606
||||| || ||| | || || |||| |||||| | | | ||||| | |||
Sbjct 29770 GTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAATACGAGCCCCCACTGC---AGTA 29826
Query 9607 -ATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640
||||||| |||| ||| | ||| || || | |||
Sbjct 29827 AATCTCTCGGGTTTCTTCAAAAATTCTACGACCTC 29861
>seq30480
Length=20585
Score = 89.7 bits (98), Expect = 6e-13
Identities = 154/224 (69%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227
|| || ||||| || |||||||| || || ||||| | ||| ||| ||||| | |||
Sbjct 14648 TGAGGCCTTGGAGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGA 14589
Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287
|||||| | ||||||| | |||||| ||||| || || |||||| || | |
Sbjct 14588 GACATCAAATGATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGAT 14529
Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAG 107347
|| | ||| | ||| | ||| || |||||| | | || | | | | ||| ||
Sbjct 14528 ACTCTCATCAGCATATGTTGTGGCCTTTCCACAATCTTTCCCTGAATCTTTAAAAGGTAA 14469
Query 107348 CTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 107391
| | ||||||||||||| |||||||||| || | ||| ||||
Sbjct 14468 GACCTTTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTC 14425
Score = 86.0 bits (94), Expect = 7e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507
||||| | || || || ||||| || | |||||||||||| || ||| | |||
Sbjct 15989 ACATATCTAGGTAGAGCAATTGAAGCAAGATTGCAAACAGCAGTTTCAGTTGGACTAGTG 15930
Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567
||||| | ||| |||||||||||||| ||| ||| || || || | ||||| |||||
Sbjct 15929 TACTCAATAATCTCTGTACACAAGTTAGAAGACTTGATAGTGCCAAGATTCTGCTGGTTG 15870
Query 106568 CTCTTTTTGTTGCACGCATCCT 106589
|| ||| | ||||| | |||||
Sbjct 15869 CTTTTTCTATTGCAAGAATCCT 15848
>seq23166
Length=18651
Score = 86.0 bits (94), Expect = 7e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507
||||| |||||| || ||||| || | |||||| ||||| || ||| | ||||
Sbjct 7428 ACATATCGTGGAAGAGCAATTGAGGCAAGATTGCACACAGCAGTTTCAGTAGGACTTGTG 7487
Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567
|| || | |||||| ||||||||||| ||| ||| || || || | ||||| |||||
Sbjct 7488 TATTCAATAATTTCAGTACACAAGTTAGAAGACTTGATTGTGCCAAGATTCTGCTGGTTG 7547
Query 106568 CTCTTTTTGTTGCACGCATCCT 106589
|| ||| |||| || | |||||
Sbjct 7548 CTTTTTCTGTTACAAGTATCCT 7569
>seq728
Length=46982
Score = 86.0 bits (94), Expect = 7e-12
Identities = 150/218 (69%), Gaps = 3/218 (1%)
Strand=Plus/Plus
Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333
||||| || ||| | ||| || |||| ||||| | |||||||||||| || ||
Sbjct 2252 GCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCA 2311
Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393
||||| | ||||| || ||||||||| | || | ||||| ||| |||||| ||
Sbjct 2312 GGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATC 2371
Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAAC 117453
|| || ||||| ||||| || | | ||||| ||||||| ||| || | |
Sbjct 2372 CCTTCAACACAGGCAAAAGCCACCAAACGCTCCGCGAAGGTTTCGGAC---CCATCGATC 2428
Query 117454 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGG 117491
|| | ||||||||||||||||| |||| ||| ||
Sbjct 2429 CAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGG 2466
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589663759067600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |