Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq191 127 2e-24 seq15443 123 3e-23 seq30480 89.7 6e-13 seq23166 86.0 7e-12 seq728 86.0 7e-12 >seq191 Length=31611 Score = 127 bits (140), Expect = 2e-24 Identities = 196/280 (70%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || |||||||| || |||||||| || |||||||| || |||| |||||||| | Sbjct 21879 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCACCT 21820 Query 9342 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 | ||| |||| | |||| ||||||| ||||||||||||||||| || |||||||| Sbjct 21819 CCAAGACCTGCACCTCTTTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATACAA 21760 Query 9402 GG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456 || | || ||| || | ||||| | ||| | ||| || || ||||||| Sbjct 21759 GGCGCTTTCGACTTT-----GCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCCCACAC 21705 Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9516 | ||||||| ||| ||||| | || || | ||| || || || ||| || |||| Sbjct 21704 CCACAAACAACTCAACAAACTCTGACGCTGCACAAGAGAAAAATGGCACACCAGCCTCAC 21645 Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | || | |||| || | ||| ||||| || |||||||| Sbjct 21644 CAGCTACTGCTCTAGCTAAAAGGGTCTTTCCAGTACCTGG 21605 >seq15443 Length=42915 Score = 123 bits (136), Expect = 3e-23 Identities = 306/455 (67%), Gaps = 16/455 (4%) Strand=Plus/Plus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| || ||||| | || | || ||||| ||||| | ||||| || || || Sbjct 29415 ATCAAATCGTCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 29474 Query 9254 GATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 | || | ||||| || ||| || | ||||||||||| || ||||| |||||||| Sbjct 29475 AACAACTATTATACCAGTATTTCCTT--CGAAACCATCCATTTCAGTCAATAGTTGGTTC 29532 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9369 | || ||||||| ||||||||| || | | | | |||| | | |||| || | Sbjct 29533 AGGGTCTGTTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 29590 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 9429 | |||||||| ||||||| || ||||| || || |||||| ||| | | || | Sbjct 29591 CAGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAAA 29650 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9489 |||| || || | ||| || ||||||||||||||||| || || | || | ||| Sbjct 29651 GATCACGGACTCGAGAGGCTCCAACACCAACAAACATCTCAACGAATTCTGAACCTGAA- 29709 Query 9490 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 |||| || || || ||| | |||||| ||||| || || || | || || || Sbjct 29710 ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAAGGTTTTCCCA 29769 Query 9549 GTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAAT-CTTGGCGCCACTTCCAAAGT- 9606 ||||| || ||| | || || |||| |||||| | | | ||||| | ||| Sbjct 29770 GTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAATACGAGCCCCCACTGC---AGTA 29826 Query 9607 -ATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 ||||||| |||| ||| | ||| || || | ||| Sbjct 29827 AATCTCTCGGGTTTCTTCAAAAATTCTACGACCTC 29861 >seq30480 Length=20585 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || ||||| || |||||||| || || ||||| | ||| ||| ||||| | ||| Sbjct 14648 TGAGGCCTTGGAGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGA 14589 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| | ||||||| | |||||| ||||| || || |||||| || | | Sbjct 14588 GACATCAAATGATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGAT 14529 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAG 107347 || | ||| | ||| | ||| || |||||| | | || | | | | ||| || Sbjct 14528 ACTCTCATCAGCATATGTTGTGGCCTTTCCACAATCTTTCCCTGAATCTTTAAAAGGTAA 14469 Query 107348 CTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 107391 | | ||||||||||||| |||||||||| || | ||| |||| Sbjct 14468 GACCTTTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTC 14425 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||||| | || || || ||||| || | |||||||||||| || ||| | ||| Sbjct 15989 ACATATCTAGGTAGAGCAATTGAAGCAAGATTGCAAACAGCAGTTTCAGTTGGACTAGTG 15930 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 ||||| | ||| |||||||||||||| ||| ||| || || || | ||||| ||||| Sbjct 15929 TACTCAATAATCTCTGTACACAAGTTAGAAGACTTGATAGTGCCAAGATTCTGCTGGTTG 15870 Query 106568 CTCTTTTTGTTGCACGCATCCT 106589 || ||| | ||||| | ||||| Sbjct 15869 CTTTTTCTATTGCAAGAATCCT 15848 >seq23166 Length=18651 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||||| |||||| || ||||| || | |||||| ||||| || ||| | |||| Sbjct 7428 ACATATCGTGGAAGAGCAATTGAGGCAAGATTGCACACAGCAGTTTCAGTAGGACTTGTG 7487 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 || || | |||||| ||||||||||| ||| ||| || || || | ||||| ||||| Sbjct 7488 TATTCAATAATTTCAGTACACAAGTTAGAAGACTTGATTGTGCCAAGATTCTGCTGGTTG 7547 Query 106568 CTCTTTTTGTTGCACGCATCCT 106589 || ||| |||| || | ||||| Sbjct 7548 CTTTTTCTGTTACAAGTATCCT 7569 >seq728 Length=46982 Score = 86.0 bits (94), Expect = 7e-12 Identities = 150/218 (69%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | ||| || |||| ||||| | |||||||||||| || || Sbjct 2252 GCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCA 2311 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| | ||||| || ||||||||| | || | ||||| ||| |||||| || Sbjct 2312 GGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATC 2371 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAAC 117453 || || ||||| ||||| || | | ||||| ||||||| ||| || | | Sbjct 2372 CCTTCAACACAGGCAAAAGCCACCAAACGCTCCGCGAAGGTTTCGGAC---CCATCGATC 2428 Query 117454 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGG 117491 || | ||||||||||||||||| |||| ||| || Sbjct 2429 CAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGG 2466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589663759067600