Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq11014 172 6e-38 seq20193 159 4e-34 seq8181 125 8e-24 seq31657 118 1e-21 seq3149 89.7 6e-13 seq20218 84.2 2e-11 seq25757 82.4 9e-11 >seq11014 Length=29319 Score = 172 bits (190), Expect = 6e-38 Identities = 269/382 (70%), Gaps = 4/382 (1%) Strand=Plus/Plus Query 168509 AGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCATGTTTATTA 168568 |||||| | ||| | ||||| |||| |||| ||||| || |||||||| ||||| Sbjct 10054 AGCACTGAAAACCGTCTTTACATTGGACGGTTTGGTGTTTTGATGATCCCTACCTTATTG 10113 Query 168569 ACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACCACCTGTCGATATCGACGG 168627 || || | | ||| || ||| |||| || |||| ||| || || || || || || || Sbjct 10114 ACGGCWACTTC-TGTATTTATTATTGCCTTCATTGTTGCTCCTCCAGTAGACATTGATGG 10172 Query 168628 AATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTCAGGTGCAGT 168687 || | |||||||| |||| ||||| | || ||||||||||| || || ||||| | Sbjct 10173 TATTGGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAACATTATTTCCGGTGCCAT 10232 Query 168688 TGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCTACAAT 168747 | |||| |||| || || ||| |||| || |||||||| |||||||| || | | Sbjct 10233 TATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGGCATCCGT 10292 Query 168748 CGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGG 168807 ||||| ||||||| || ||||||||||| | | | | | |||||| || | || Sbjct 10293 TGATGAATGGTTATTCAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGG 10352 Query 168808 AATCTCTGCCTACATGGGTAGACAGTGGGA-ATTATCATACAGACTAGGTATGAGACCTT 168866 | || ||||||||| ||||||| ||| | | | | | |||||| |||||| Sbjct 10353 CGTAGCTTGTTACATGGGTCRTGAGTGGGAGCTTAGC-TTCCGTSTRGGTATGCGACCTT 10411 Query 168867 GGATCTGTGTTGCTTATTCAGC 168888 |||| |||||| |||||||| Sbjct 10412 GGATTGCTGTTGCATATTCAGC 10433 >seq20193 Length=7469 Score = 159 bits (176), Expect = 4e-34 Identities = 262/373 (70%), Gaps = 5/373 (1%) Strand=Plus/Minus Query 168500 TGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCA 168559 ||| |||| |||||| | ||| | ||||| |||| ||||| ||||| || |||||| | Sbjct 6827 TGGATAACTAGCACTGA-AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCTCT 6769 Query 168560 TGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACCACCTGTCGA 168618 ||||| || ||| | ||| || ||| |||| || |||||||| || || || || Sbjct 6768 ACCTTATTGACGGCAACTTY-TGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGA 6710 Query 168619 TATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTC 168678 || || || || | |||||||| |||| ||||| | | ||||||||||| || || Sbjct 6709 CATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTHACGGAAACAACATTATTTC 6650 Query 168679 AGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAGC 168738 ||||| || |||| |||| || || ||| |||| || |||||||| |||||||| Sbjct 6649 CGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGC 6590 Query 168739 AGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTT 168798 | | | ||||| |||||||| || | ||||||||| | | | | | ||||| Sbjct 6589 GACATCCGTTGATGAATGGTTATACAACGRTGGTCCTTATGAACTAATTGTTCTACACTT 6530 Query 168799 CCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGA-ATTATCATACAGACTAGGTA 168857 | || | || | || ||||||||| | ||||||| ||| | | || || |||| Sbjct 6529 CTTACTTGGCGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCA-TCTGGGTA 6471 Query 168858 TGAGACCTTGGAT 168870 || ||||||||| Sbjct 6470 TGCAACCTTGGAT 6458 >seq8181 Length=32328 Score = 125 bits (138), Expect = 8e-24 Identities = 191/272 (70%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 168974 GGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTC 169033 || || | ||| |||||| | |||||| || ||| ||||||| |||||||| || || Sbjct 12081 GGTACTTCCAATTTCATGATTCTATTCCTTGCTGAGTACAACATCCTTATGCACCCATTT 12022 Query 169034 CATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCA 169093 || || ||| |||| || | | || || ||||| | | ||||||| ||| Sbjct 12021 CACATCTTAGGCCTAGCTTGTGTAAAAAGCGGCTCCCTATTATGTGTTATGCATGCTTCC 11962 Query 169094 CTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTAC 169153 | ||||| ||| | | ||||| || || || || | |||||| || | |||||| Sbjct 11961 TTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 11902 Query 169154 AAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGA 169213 | || ||| |||| |||||||| || ||||| || || || || || || || | | Sbjct 11901 AGATTTGGTTAAGAGGAAGAAACATAGAATATCGTAGCTGCTTATTCTTATTTTGGCAAA 11842 Query 169214 TTAATCTTCCAGTATGCAAGTTTCAACAACTC 169245 |||||||| || ||||| |||||||||||||| Sbjct 11841 TTAATCTTTCAATATGCTAGTTTCAACAACTC 11810 >seq31657 Length=14304 Score = 118 bits (130), Expect = 1e-21 Identities = 105/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 168908 GCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGA 168967 ||||| ||| | | |||||| | ||||| || ||| ||||||||||||||||||||| Sbjct 297 GCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 356 Query 168968 ATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCAT 169027 || ||||| || ||||| |||||| | ||||||| || || |||||||| |||||||| Sbjct 357 ATCTCTGGTACTTTCAATTTCATGATTVTATTCCAGGCTGAACACAACATCCTTATGCAC 416 Query 169028 CCCTTCCATATG 169039 || || || ||| Sbjct 417 CCATTTCACATG 428 >seq3149 Length=150756 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 168908 GCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGA 168967 ||||||||| | | |||||| | ||| | || ||| ||||||||||||||||||||| Sbjct 11598 GCAGTATTCTTGATCTACCCAATCGGTTAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 11657 Query 168968 ATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCA 169006 || ||||| || ||||| | |||| | ||||||||| || Sbjct 11658 ATCTCTGGTACTTTCAATTACATGATTGTATTCCAACCA 11696 >seq20218 Length=9351 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 169388 ACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAAC 169447 || |||| ||| | | ||| | || ||||||||||||||||| |||||||| ||||| Sbjct 2122 ACTTGGGTTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2181 Query 169448 GCTCACAACTTCCCACTAGACTTAGC 169473 ||||| |||||||| |||||| |||| Sbjct 2182 GCTCATAACTTCCCTCTAGACCTAGC 2207 >seq25757 Length=3733 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 169319 ATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAG 169378 ||||| |||||| | || || || || || || ||||| || || || | | || Sbjct 3563 ATGGCTTTCAACCTAAATGGTTTCAATTTCAATCAATCTGTAGTTGACAGTCAGAGTCGT 3622 Query 169379 ATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCAT 169438 | ||| || ||| ||| || || | || ||||||||||||||||| |||||| Sbjct 3623 GTAATTAACACTTGGACTGATATATATATACGTGCTAACCTTGGTATGGAAGTTATGCAT 3682 Query 169439 GAGCGTAACGCTCACAACTTCCCACTAGACTTAGC 169473 || ||||| ||||| |||||||| |||||| |||| Sbjct 3683 GAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 3717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564138283195200