Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_015283.1
Length=176428
Score E
Sequences producing significant alignments: (Bits) Value
seq11014 172 6e-38
seq20193 159 4e-34
seq8181 125 8e-24
seq31657 118 1e-21
seq3149 89.7 6e-13
seq20218 84.2 2e-11
seq25757 82.4 9e-11
>seq11014
Length=29319
Score = 172 bits (190), Expect = 6e-38
Identities = 269/382 (70%), Gaps = 4/382 (1%)
Strand=Plus/Plus
Query 168509 AGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCATGTTTATTA 168568
|||||| | ||| | ||||| |||| |||| ||||| || |||||||| |||||
Sbjct 10054 AGCACTGAAAACCGTCTTTACATTGGACGGTTTGGTGTTTTGATGATCCCTACCTTATTG 10113
Query 168569 ACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACCACCTGTCGATATCGACGG 168627
|| || | | ||| || ||| |||| || |||| ||| || || || || || || ||
Sbjct 10114 ACGGCWACTTC-TGTATTTATTATTGCCTTCATTGTTGCTCCTCCAGTAGACATTGATGG 10172
Query 168628 AATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTCAGGTGCAGT 168687
|| | |||||||| |||| ||||| | || ||||||||||| || || ||||| |
Sbjct 10173 TATTGGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAACATTATTTCCGGTGCCAT 10232
Query 168688 TGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCTACAAT 168747
| |||| |||| || || ||| |||| || |||||||| |||||||| || | |
Sbjct 10233 TATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGGCATCCGT 10292
Query 168748 CGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGG 168807
||||| ||||||| || ||||||||||| | | | | | |||||| || | ||
Sbjct 10293 TGATGAATGGTTATTCAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGG 10352
Query 168808 AATCTCTGCCTACATGGGTAGACAGTGGGA-ATTATCATACAGACTAGGTATGAGACCTT 168866
| || ||||||||| ||||||| ||| | | | | | |||||| ||||||
Sbjct 10353 CGTAGCTTGTTACATGGGTCRTGAGTGGGAGCTTAGC-TTCCGTSTRGGTATGCGACCTT 10411
Query 168867 GGATCTGTGTTGCTTATTCAGC 168888
|||| |||||| ||||||||
Sbjct 10412 GGATTGCTGTTGCATATTCAGC 10433
>seq20193
Length=7469
Score = 159 bits (176), Expect = 4e-34
Identities = 262/373 (70%), Gaps = 5/373 (1%)
Strand=Plus/Minus
Query 168500 TGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCA 168559
||| |||| |||||| | ||| | ||||| |||| ||||| ||||| || |||||| |
Sbjct 6827 TGGATAACTAGCACTGA-AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCTCT 6769
Query 168560 TGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACCACCTGTCGA 168618
||||| || ||| | ||| || ||| |||| || |||||||| || || || ||
Sbjct 6768 ACCTTATTGACGGCAACTTY-TGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGA 6710
Query 168619 TATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTC 168678
|| || || || | |||||||| |||| ||||| | | ||||||||||| || ||
Sbjct 6709 CATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTHACGGAAACAACATTATTTC 6650
Query 168679 AGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAGC 168738
||||| || |||| |||| || || ||| |||| || |||||||| ||||||||
Sbjct 6649 CGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGC 6590
Query 168739 AGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTT 168798
| | | ||||| |||||||| || | ||||||||| | | | | | |||||
Sbjct 6589 GACATCCGTTGATGAATGGTTATACAACGRTGGTCCTTATGAACTAATTGTTCTACACTT 6530
Query 168799 CCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGA-ATTATCATACAGACTAGGTA 168857
| || | || | || ||||||||| | ||||||| ||| | | || || ||||
Sbjct 6529 CTTACTTGGCGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCA-TCTGGGTA 6471
Query 168858 TGAGACCTTGGAT 168870
|| |||||||||
Sbjct 6470 TGCAACCTTGGAT 6458
>seq8181
Length=32328
Score = 125 bits (138), Expect = 8e-24
Identities = 191/272 (70%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 168974 GGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTC 169033
|| || | ||| |||||| | |||||| || ||| ||||||| |||||||| || ||
Sbjct 12081 GGTACTTCCAATTTCATGATTCTATTCCTTGCTGAGTACAACATCCTTATGCACCCATTT 12022
Query 169034 CATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCA 169093
|| || ||| |||| || | | || || ||||| | | ||||||| |||
Sbjct 12021 CACATCTTAGGCCTAGCTTGTGTAAAAAGCGGCTCCCTATTATGTGTTATGCATGCTTCC 11962
Query 169094 CTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTAC 169153
| ||||| ||| | | ||||| || || || || | |||||| || | ||||||
Sbjct 11961 TTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 11902
Query 169154 AAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGA 169213
| || ||| |||| |||||||| || ||||| || || || || || || || | |
Sbjct 11901 AGATTTGGTTAAGAGGAAGAAACATAGAATATCGTAGCTGCTTATTCTTATTTTGGCAAA 11842
Query 169214 TTAATCTTCCAGTATGCAAGTTTCAACAACTC 169245
|||||||| || ||||| ||||||||||||||
Sbjct 11841 TTAATCTTTCAATATGCTAGTTTCAACAACTC 11810
>seq31657
Length=14304
Score = 118 bits (130), Expect = 1e-21
Identities = 105/132 (80%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 168908 GCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGA 168967
||||| ||| | | |||||| | ||||| || ||| |||||||||||||||||||||
Sbjct 297 GCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 356
Query 168968 ATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCAT 169027
|| ||||| || ||||| |||||| | ||||||| || || |||||||| ||||||||
Sbjct 357 ATCTCTGGTACTTTCAATTTCATGATTVTATTCCAGGCTGAACACAACATCCTTATGCAC 416
Query 169028 CCCTTCCATATG 169039
|| || || |||
Sbjct 417 CCATTTCACATG 428
>seq3149
Length=150756
Score = 89.7 bits (98), Expect = 6e-13
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 168908 GCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGA 168967
||||||||| | | |||||| | ||| | || ||| |||||||||||||||||||||
Sbjct 11598 GCAGTATTCTTGATCTACCCAATCGGTTAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 11657
Query 168968 ATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCA 169006
|| ||||| || ||||| | |||| | ||||||||| ||
Sbjct 11658 ATCTCTGGTACTTTCAATTACATGATTGTATTCCAACCA 11696
>seq20218
Length=9351
Score = 84.2 bits (92), Expect = 2e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 169388 ACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAAC 169447
|| |||| ||| | | ||| | || ||||||||||||||||| |||||||| |||||
Sbjct 2122 ACTTGGGTTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 2181
Query 169448 GCTCACAACTTCCCACTAGACTTAGC 169473
||||| |||||||| |||||| ||||
Sbjct 2182 GCTCATAACTTCCCTCTAGACCTAGC 2207
>seq25757
Length=3733
Score = 82.4 bits (90), Expect = 9e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 169319 ATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAG 169378
||||| |||||| | || || || || || || ||||| || || || | | ||
Sbjct 3563 ATGGCTTTCAACCTAAATGGTTTCAATTTCAATCAATCTGTAGTTGACAGTCAGAGTCGT 3622
Query 169379 ATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCAT 169438
| ||| || ||| ||| || || | || ||||||||||||||||| ||||||
Sbjct 3623 GTAATTAACACTTGGACTGATATATATATACGTGCTAACCTTGGTATGGAAGTTATGCAT 3682
Query 169439 GAGCGTAACGCTCACAACTTCCCACTAGACTTAGC 169473
|| ||||| ||||| |||||||| |||||| ||||
Sbjct 3683 GAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 3717
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 564138283195200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |