Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq24530 141 1e-28 seq11014 138 2e-27 seq31657 132 7e-26 seq8181 122 1e-22 seq20193 116 6e-21 >seq24530 Length=26533 Score = 141 bits (156), Expect = 1e-28 Identities = 194/272 (71%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 215777 GGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTC 215836 || || ||||| | |||| |||| ||||||||||| |||||||| || ||||||||||| Sbjct 795 GGTACTTTCAATTTCATGATTGTATTCCAGGCTGAVCACAACATCCTTATGCACCCATTT 736 Query 215837 CACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCA 215896 ||||| ||||| | |||||||| | || || | ||| | | ||||| | |||| Sbjct 735 CACATCTTAGGCCTAGCTGGTGTAAAATGCGGCTCCCTATTCAGTACTATGCATGCTTCA 676 Query 215897 CTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTAC 215956 |||| || ||| | | || || || | || | | |||||| || | |||||| Sbjct 675 TTTGTAACTTCTAGTTTTATAAGGGAAAGCACATAAAATGAATCTGCTAATGAAGGTTAC 616 Query 215957 AAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGC 216016 | |||| |||||||| ||||| || || |||||||| | || | ||| ||||| | Sbjct 615 AGATTCGATCAAGAGGAAGAAACTTAGAATATCGTAGCCGATCATGCTTATTTTGGCTGA 556 Query 216017 CTCATCTTCCAATACGCATCTTTCAACAACTC 216048 | ||||||||||| | ||| |||||||| Sbjct 555 TTGATCTTCCAATATGATAGTTTTAACAACTC 524 >seq11014 Length=29319 Score = 138 bits (152), Expect = 2e-27 Identities = 259/383 (68%), Gaps = 0/383 (0%) Strand=Plus/Plus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 ||||| || ||| | ||| |||| |||||||||| | ||||| ||| | | | | Sbjct 10057 ACTGAAAACCGTCTTTACATTGGACGGTTTGGTGTTTTGATGATCCCTACCTTATTGACG 10116 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||| | ||| ||||| || || || || || || Sbjct 10117 GCWACTTCTGTATTTATTATTGCCTTCATTGTTGCTCCTCCAGTAGACATTGATGGTATT 10176 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || || ||| | || ||| || | || || |||||||| || || ||||| || | Sbjct 10177 GGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAACATTATTTCCGGTGCCATTATT 10236 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || || || ||||| || ||||| ||||||||||| ||| | ||||| Sbjct 10237 CCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGGCATCCGTTGAT 10296 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 |||||| | | ||| ||||| |||| |||| || | | |||||| | |||| | Sbjct 10297 GAATGGTTATTCAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGCGTA 10356 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || ||| || ||||||| ||| | | | | |||||| |||||||||| Sbjct 10357 GCTTGTTACATGGGTCRTGAGTGGGAGCTTAGCTTCCGTSTRGGTATGCGACCTTGGATT 10416 Query 215675 TGTGTTGCTTACTCCGCACCTGT 215697 |||||| || || || | ||| Sbjct 10417 GCTGTTGCATATTCAGCTCTTGT 10439 >seq31657 Length=14304 Score = 132 bits (146), Expect = 7e-26 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 215711 GCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGA 215770 ||||| ||| | | || ||| ||||||| || ||| ||||||| |||||| || ||| Sbjct 297 GCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 356 Query 215771 ATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCAC 215830 |||||||| || ||||| | |||| || | ||||||||||| |||||||| || |||||| Sbjct 357 ATCTCTGGTACTTTCAATTTCATGATTVTATTCCAGGCTGAACACAACATCCTTATGCAC 416 Query 215831 CCATTCCACATGTTAGG 215847 ||||| ||||||||||| Sbjct 417 CCATTTCACATGTTAGG 433 >seq8181 Length=32328 Score = 122 bits (134), Expect = 1e-22 Identities = 190/272 (70%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 215777 GGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTC 215836 || || | ||| | |||| || | |||| |||||| ||||||| || ||||||||||| Sbjct 12081 GGTACTTCCAATTTCATGATTCTATTCCTTGCTGAGTACAACATCCTTATGCACCCATTT 12022 Query 215837 CACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCA 215896 ||||| ||||| | ||| |||| | || || | || | || ||||| | ||| Sbjct 12021 CACATCTTAGGCCTAGCTTGTGTAAAAAGCGGCTCCCTATTATGTGTTATGCATGCTTCC 11962 Query 215897 CTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTAC 215956 | || || ||| | | ||||| || || || || | |||||| || | |||||| Sbjct 11961 TTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 11902 Query 215957 AAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGC 216016 | || || ||||||| |||||||| || ||||||||||| | ||| ||||| Sbjct 11901 AGATTTGGTTAAGAGGAAGAAACATAGAATATCGTAGCTGCTTATTCTTATTTTGGCAAA 11842 Query 216017 CTCATCTTCCAATACGCATCTTTCAACAACTC 216048 | ||||| ||||| || |||||||||||| Sbjct 11841 TTAATCTTTCAATATGCTAGTTTCAACAACTC 11810 >seq20193 Length=7469 Score = 116 bits (128), Expect = 6e-21 Identities = 203/296 (69%), Gaps = 1/296 (0%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 ||||| || ||| | ||| |||| ||||||||||| | ||||| || | | | | Sbjct 6815 ACTGA-AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCTCTACCTTATTGACG 6757 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || | || || | || ||||| ||||| ||||| || || || || || || Sbjct 6756 GCAACTTYTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGACATTGATGGTATT 6697 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || || ||| | || ||| || | | || |||||||| || || ||||| || | Sbjct 6696 CGTGAACCTGTTTCAGGGTCTCTACTTHACGGAAACAACATTATTTCCGGTGCCATTATT 6637 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || || || ||||| || ||||| ||||||||||| || | ||||| Sbjct 6636 CCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGACATCCGTTGAT 6577 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGG 215610 |||||| | ||||| | ||| |||| |||| || | | |||||| | |||| Sbjct 6576 GAATGGTTATACAACGRTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGG 6521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744681211775200