Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_015290.1
Length=182180
Score E
Sequences producing significant alignments: (Bits) Value
seq11014 163 3e-35
seq24530 131 2e-25
seq31657 111 2e-19
seq8181 107 2e-18
seq15728 91.5 2e-13
seq46 82.4 9e-11
>seq11014
Length=29319
Score = 163 bits (180), Expect = 3e-35
Identities = 281/410 (69%), Gaps = 0/410 (0%)
Strand=Plus/Plus
Query 169708 AGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCATGTCTATTA 169767
||||| | ||||| | || |||| |||| ||||| ||||||||||| ||||
Sbjct 10054 AGCACTGAAAACCGTCTTTACATTGGACGGTTTGGTGTTTTGATGATCCCTACCTTATTG 10113
Query 169768 GCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGACATCGATGGA 169827
| || | | ||||| |||| ||||| | ||||| || || ||||| |||||
Sbjct 10114 ACGGCWACTTCTGTATTTATTATTGCCTTCATTGTTGCTCCTCCAGTAGACATTGATGGT 10173
Query 169828 ATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTT 169887
|| | |||||||| |||| || | | || || |||||||| || || ||||| ||
Sbjct 10174 ATTGGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAACATTATTTCCGGTGCCATT 10233
Query 169888 GTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTA 169947
|||| |||| || || ||| | || || || || || |||||||| ||| | |
Sbjct 10234 ATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGGCATCCGTT 10293
Query 169948 GATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGA 170007
||||| ||||| | ||||||||||||||| || || || | | |||||| | | ||
Sbjct 10294 GATGAATGGTTATTCAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGC 10353
Query 170008 ATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGG 170067
| || ||||||||| ||||||| || | |||| | |||||||| ||||||
Sbjct 10354 GTAGCTTGTTACATGGGTCRTGAGTGGGAGCTTAGCTTCCGTSTRGGTATGCGACCTTGG 10413
Query 170068 ATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTT 170117
|| ||| |||||||| |||| || ||| || ||| || |||||
Sbjct 10414 ATTGCTGTTGCATATTCAGCTCTTGTTGCAGTTGCTACCGCAGTTTTCTT 10463
>seq24530
Length=26533
Score = 131 bits (144), Expect = 2e-25
Identities = 190/269 (71%), Gaps = 0/269 (0%)
Strand=Plus/Minus
Query 170173 GGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTC 170232
||||| || || |||||| | |||||||| || || |||||||| ||||||||||||||
Sbjct 795 GGTACTTTCAATTTCATGATTGTATTCCAGGCTGAVCACAACATCCTTATGCACCCATTT 736
Query 170233 CATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCA 170292
|| || ||| | |||||| | | || | || ||| | ||||| | ||||
Sbjct 735 CACATCTTAGGCCTAGCTGGTGTAAAATGCGGCTCCCTATTCAGTACTATGCATGCTTCA 676
Query 170293 CTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATAC 170352
||||||| ||| | | || || || | ||| | || || || || | || |||
Sbjct 675 TTTGTAACTTCTAGTTTTATAAGGGAAAGCACATAAAATGAATCTGCTAATGAAGGTTAC 616
Query 170353 AAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGA 170412
| ||||| ||||| |||||||| || || || || || | |||| || ||||| ||
Sbjct 615 AGATTCGATCAAGAGGAAGAAACTTAGAATATCGTAGCCGATCATGCTTATTTTGGCTGA 556
Query 170413 CTTATCTTCCAATATGCTAGCTTTAACAA 170441
| ||||||||||||| ||| ||||||||
Sbjct 555 TTGATCTTCCAATATGATAGTTTTAACAA 527
>seq31657
Length=14304
Score = 111 bits (122), Expect = 2e-19
Identities = 104/133 (78%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 170106 CGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGG 170165
||| || ||||| | || || ||||||| ||| ||| || || || |||||||||||
Sbjct 296 CGCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGG 355
Query 170166 TATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCA 170225
||||| ||||| || || |||||| | ||||||| || || |||||||| ||||||||
Sbjct 356 AATCTCTGGTACTTTCAATTTCATGATTVTATTCCAGGCTGAACACAACATCCTTATGCA 415
Query 170226 CCCATTCCATATG 170238
|||||| || |||
Sbjct 416 CCCATTTCACATG 428
>seq8181
Length=32328
Score = 107 bits (118), Expect = 2e-18
Identities = 185/269 (69%), Gaps = 0/269 (0%)
Strand=Plus/Minus
Query 170173 GGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTC 170232
||||| | || |||||| | |||||| || ||| ||||||| ||||||||||||||
Sbjct 12081 GGTACTTCCAATTTCATGATTCTATTCCTTGCTGAGTACAACATCCTTATGCACCCATTT 12022
Query 170233 CATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCA 170292
|| || ||| | ||| || | | || | || || | | ||||| | |||
Sbjct 12021 CACATCTTAGGCCTAGCTTGTGTAAAAAGCGGCTCCCTATTATGTGTTATGCATGCTTCC 11962
Query 170293 CTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATAC 170352
| ||||| ||| | | ||||| || || ||||| || || || || | || |||
Sbjct 11961 TTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 11902
Query 170353 AAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGA 170412
| ||| || |||| ||||||||||| || || || || || || || ||||| | |
Sbjct 11901 AGATTTGGTTAAGAGGAAGAAACATAGAATATCGTAGCTGCTTATTCTTATTTTGGCAAA 11842
Query 170413 CTTATCTTCCAATATGCTAGCTTTAACAA 170441
| ||||| ||||||||||| || |||||
Sbjct 11841 TTAATCTTTCAATATGCTAGTTTCAACAA 11813
>seq15728
Length=57915
Score = 91.5 bits (100), Expect = 2e-13
Identities = 172/251 (69%), Gaps = 3/251 (1%)
Strand=Plus/Plus
Query 170318 AGACAACAGATAA--CGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAAC 170375
|| ||||||| || ||| ||| ||| | | |||| |||| | ||||| ||| ||||
Sbjct 13100 AGCCAACAGAAAAGTCGAATCATCGAATGAATGTTACATATTCTGTCAAGAGGAAAAAAC 13159
Query 170376 ATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTT 170435
|| || ||||| | | ||||| || ||||| || | |||| || ||||| ||| ||
Sbjct 13160 TTATAATATTGTAGTCGTTCATGGTTATTTTGGCTGATTGATCTACCGATATGTTAGTTT 13219
Query 170436 TAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTT 170495
|| | |||| | ||||||||||||||| | | | | ||||| | ||||||||
Sbjct 13220 CAATGACTCTCGTTCGTTACACTTCTTCCTTGCTGCTTGGCATATAGTAGGTATCTGGTT 13279
Query 170496 AACTTC-AATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGT 170554
|| | | |||||| |||||||| || || || || || || |||| ||| |
Sbjct 13280 TACCACTTTTAGGTATTAGCACAATGCTTTTCAATCTAAAAAATTTCAATTTCAGCCAAT 13339
Query 170555 CAATCGTAGAT 170565
| || || |||
Sbjct 13340 CTATAGTTGAT 13350
>seq46
Length=65133
Score = 82.4 bits (90), Expect = 9e-11
Identities = 138/195 (71%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 170455 CACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGC 170514
|||||||||| ||| | | || |||||| | |||||||| || | | ||||| ||
Sbjct 51964 CACTTCTTCCGAGCTGCTTGGCCCGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGC 52023
Query 170515 ACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTG-G 170573
| |||| || | ||| ||||| || || |||||||| || | || ||| | || | |
Sbjct 52024 GCTATGGGTTTCACCCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAG-TCAGTG 52082
Query 170574 TAAAGTAGTTCCTACATGGGCAGACGT---TCTT-AACAGAGCAAACCTAGGTATGGAAG 170629
| | ||| || || ||||| || | || | ||| | || ||||| ||||||||||
Sbjct 52083 TCATGTAATTAACACTTGGGCCGATATGTATCATCAACCGTGCTAACCTTGGTATGGAAG 52142
Query 170630 TAATGCATGAGCGTA 170644
| |||||||| ||||
Sbjct 52143 TTATGCATGAACGTA 52157
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 582534792056000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |