Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq11014 163 3e-35 seq24530 131 2e-25 seq31657 111 2e-19 seq8181 107 2e-18 seq15728 91.5 2e-13 seq46 82.4 9e-11 >seq11014 Length=29319 Score = 163 bits (180), Expect = 3e-35 Identities = 281/410 (69%), Gaps = 0/410 (0%) Strand=Plus/Plus Query 169708 AGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCATGTCTATTA 169767 ||||| | ||||| | || |||| |||| ||||| ||||||||||| |||| Sbjct 10054 AGCACTGAAAACCGTCTTTACATTGGACGGTTTGGTGTTTTGATGATCCCTACCTTATTG 10113 Query 169768 GCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGACATCGATGGA 169827 | || | | ||||| |||| ||||| | ||||| || || ||||| ||||| Sbjct 10114 ACGGCWACTTCTGTATTTATTATTGCCTTCATTGTTGCTCCTCCAGTAGACATTGATGGT 10173 Query 169828 ATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTT 169887 || | |||||||| |||| || | | || || |||||||| || || ||||| || Sbjct 10174 ATTGGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAACATTATTTCCGGTGCCATT 10233 Query 169888 GTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTA 169947 |||| |||| || || ||| | || || || || || |||||||| ||| | | Sbjct 10234 ATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGCGGCATCCGTT 10293 Query 169948 GATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGA 170007 ||||| ||||| | ||||||||||||||| || || || | | |||||| | | || Sbjct 10294 GATGAATGGTTATTCAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGC 10353 Query 170008 ATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGG 170067 | || ||||||||| ||||||| || | |||| | |||||||| |||||| Sbjct 10354 GTAGCTTGTTACATGGGTCRTGAGTGGGAGCTTAGCTTCCGTSTRGGTATGCGACCTTGG 10413 Query 170068 ATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTT 170117 || ||| |||||||| |||| || ||| || ||| || ||||| Sbjct 10414 ATTGCTGTTGCATATTCAGCTCTTGTTGCAGTTGCTACCGCAGTTTTCTT 10463 >seq24530 Length=26533 Score = 131 bits (144), Expect = 2e-25 Identities = 190/269 (71%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 170173 GGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTC 170232 ||||| || || |||||| | |||||||| || || |||||||| |||||||||||||| Sbjct 795 GGTACTTTCAATTTCATGATTGTATTCCAGGCTGAVCACAACATCCTTATGCACCCATTT 736 Query 170233 CATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCA 170292 || || ||| | |||||| | | || | || ||| | ||||| | |||| Sbjct 735 CACATCTTAGGCCTAGCTGGTGTAAAATGCGGCTCCCTATTCAGTACTATGCATGCTTCA 676 Query 170293 CTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATAC 170352 ||||||| ||| | | || || || | ||| | || || || || | || ||| Sbjct 675 TTTGTAACTTCTAGTTTTATAAGGGAAAGCACATAAAATGAATCTGCTAATGAAGGTTAC 616 Query 170353 AAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGA 170412 | ||||| ||||| |||||||| || || || || || | |||| || ||||| || Sbjct 615 AGATTCGATCAAGAGGAAGAAACTTAGAATATCGTAGCCGATCATGCTTATTTTGGCTGA 556 Query 170413 CTTATCTTCCAATATGCTAGCTTTAACAA 170441 | ||||||||||||| ||| |||||||| Sbjct 555 TTGATCTTCCAATATGATAGTTTTAACAA 527 >seq31657 Length=14304 Score = 111 bits (122), Expect = 2e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 170106 CGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGG 170165 ||| || ||||| | || || ||||||| ||| ||| || || || ||||||||||| Sbjct 296 CGCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGG 355 Query 170166 TATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCA 170225 ||||| ||||| || || |||||| | ||||||| || || |||||||| |||||||| Sbjct 356 AATCTCTGGTACTTTCAATTTCATGATTVTATTCCAGGCTGAACACAACATCCTTATGCA 415 Query 170226 CCCATTCCATATG 170238 |||||| || ||| Sbjct 416 CCCATTTCACATG 428 >seq8181 Length=32328 Score = 107 bits (118), Expect = 2e-18 Identities = 185/269 (69%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 170173 GGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTC 170232 ||||| | || |||||| | |||||| || ||| ||||||| |||||||||||||| Sbjct 12081 GGTACTTCCAATTTCATGATTCTATTCCTTGCTGAGTACAACATCCTTATGCACCCATTT 12022 Query 170233 CATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCA 170292 || || ||| | ||| || | | || | || || | | ||||| | ||| Sbjct 12021 CACATCTTAGGCCTAGCTTGTGTAAAAAGCGGCTCCCTATTATGTGTTATGCATGCTTCC 11962 Query 170293 CTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATAC 170352 | ||||| ||| | | ||||| || || ||||| || || || || | || ||| Sbjct 11961 TTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 11902 Query 170353 AAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGA 170412 | ||| || |||| ||||||||||| || || || || || || || ||||| | | Sbjct 11901 AGATTTGGTTAAGAGGAAGAAACATAGAATATCGTAGCTGCTTATTCTTATTTTGGCAAA 11842 Query 170413 CTTATCTTCCAATATGCTAGCTTTAACAA 170441 | ||||| ||||||||||| || ||||| Sbjct 11841 TTAATCTTTCAATATGCTAGTTTCAACAA 11813 >seq15728 Length=57915 Score = 91.5 bits (100), Expect = 2e-13 Identities = 172/251 (69%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 170318 AGACAACAGATAA--CGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAAC 170375 || ||||||| || ||| ||| ||| | | |||| |||| | ||||| ||| |||| Sbjct 13100 AGCCAACAGAAAAGTCGAATCATCGAATGAATGTTACATATTCTGTCAAGAGGAAAAAAC 13159 Query 170376 ATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTT 170435 || || ||||| | | ||||| || ||||| || | |||| || ||||| ||| || Sbjct 13160 TTATAATATTGTAGTCGTTCATGGTTATTTTGGCTGATTGATCTACCGATATGTTAGTTT 13219 Query 170436 TAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTT 170495 || | |||| | ||||||||||||||| | | | | ||||| | |||||||| Sbjct 13220 CAATGACTCTCGTTCGTTACACTTCTTCCTTGCTGCTTGGCATATAGTAGGTATCTGGTT 13279 Query 170496 AACTTC-AATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGT 170554 || | | |||||| |||||||| || || || || || || |||| ||| | Sbjct 13280 TACCACTTTTAGGTATTAGCACAATGCTTTTCAATCTAAAAAATTTCAATTTCAGCCAAT 13339 Query 170555 CAATCGTAGAT 170565 | || || ||| Sbjct 13340 CTATAGTTGAT 13350 >seq46 Length=65133 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 170455 CACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGC 170514 |||||||||| ||| | | || |||||| | |||||||| || | | ||||| || Sbjct 51964 CACTTCTTCCGAGCTGCTTGGCCCGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGC 52023 Query 170515 ACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTG-G 170573 | |||| || | ||| ||||| || || |||||||| || | || ||| | || | | Sbjct 52024 GCTATGGGTTTCACCCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAG-TCAGTG 52082 Query 170574 TAAAGTAGTTCCTACATGGGCAGACGT---TCTT-AACAGAGCAAACCTAGGTATGGAAG 170629 | | ||| || || ||||| || | || | ||| | || ||||| |||||||||| Sbjct 52083 TCATGTAATTAACACTTGGGCCGATATGTATCATCAACCGTGCTAACCTTGGTATGGAAG 52142 Query 170630 TAATGCATGAGCGTA 170644 | |||||||| |||| Sbjct 52143 TTATGCATGAACGTA 52157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582534792056000