Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq16835 100 2e-16 seq3886 98.7 6e-16 seq30006 96.9 2e-15 seq545 93.3 3e-14 seq572 87.8 1e-12 >seq16835 Length=8075 Score = 100 bits (110), Expect = 2e-16 Identities = 144/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || |||| || ||||| |||||||| || Sbjct 6911 TCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAA 6970 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || ||||||||| | || | ||| |||||||| ||||| |||||| || Sbjct 6971 ATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATCTTGGCTTTGAC--AT 7028 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || | |||||| || | ||| || || || ||||| || || || Sbjct 7029 --TGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTT 7086 Query 34967 CACAAAGATCTGCATATTCGT 34987 ||| ||||||||||| ||||| Sbjct 7087 CACGAAGATCTGCATCTTCGT 7107 >seq3886 Length=20373 Score = 98.7 bits (108), Expect = 6e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||||||||||| ||| | |||||||| | || || || || ||||| ||||||| Sbjct 12997 TTCCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCG 13056 Query 34813 --AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTG 34870 |||| | || |||| || ||||| || || ||||| || | | ||||||||| | Sbjct 13057 CCAAAG--TGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGG 13114 Query 34871 CGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTC 34930 || | ||||||||||| ||||| ||||| | || | || | ||| Sbjct 13115 GGGAATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTC 13174 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || | ||| |||||||| || || || ||||| |||||||| |||||| Sbjct 13175 AACCTCCAGGGTGATGGTTTTCCCGGTAAGGGTCTTAACAAAGATTTGCATA 13226 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | ||| || ||||| ||||| ||||| | ||| | || |||| ||| Sbjct 13701 ACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCATCTTCC 13760 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| ||||| ||||| || | | ||||||||| | || | || ||||| || Sbjct 13761 AACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGG 13820 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | || || || | ||| || || || Sbjct 13821 ATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGTAATCGTCTTA 13880 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| ||||||||||| |||||||||||| Sbjct 13881 CCCGTAAGAGTCTTCACGAAGATCTGCATA 13910 >seq30006 Length=21699 Score = 96.9 bits (106), Expect = 2e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 ||||||||||||| || || | || | ||| |||| || ||||| |||||||| || | Sbjct 12893 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 12834 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | | ||| |||||||| | || | || |||||||| |||||| |||||| Sbjct 12833 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGT 12774 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 | || | || | | ||||| || | || || || || ||||| ||||| ||||| | Sbjct 12773 CAATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGA 12714 Query 34972 AGATCTGCATATT 34984 |||||||||| || Sbjct 12713 AGATCTGCATTTT 12701 >seq545 Length=31085 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||||||||| | |||| | || |||| || ||||| || || ||||| Sbjct 3743 TCTTTCTGGATGTTATAGTCTGCAAGGGTGCGACCATCCTCAAGCTGCTTACCAGCAAAG 3684 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | || || ||| | || | ||| |||||||| ||||| ||| || Sbjct 3683 ATGAGCCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCCTGTATCTTTGCTTTCACATTG 3624 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | ||| || || | || || || || || || |||||||||||| Sbjct 3623 TCAATAGTATCAGAGCTCTCCACCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTCACA 3564 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 3563 AAGATCTGCAT 3553 >seq572 Length=122185 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 34748 ATCAT--TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTA 34805 ||||| |||||||||| | ||||| ||| | ||||| || ||||||||||||||| Sbjct 87937 ATCATGGTTCCTCCCCTGAGCCTCAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTG 87996 Query 34806 TAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGG 34865 || || | ||| ||| |||| |||| ||||||||| ||||| || |||| ||||| Sbjct 87997 TAATCAGCGAGGGTTCTCCCATCTTCCAACTGTTTTCCAGCAAAAATCAGTCTCTGCTGA 88056 Query 34866 TC 34867 || Sbjct 88057 TC 88058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324463511268720