Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq16835 100 2e-16
seq3886 98.7 6e-16
seq30006 96.9 2e-15
seq545 93.3 3e-14
seq572 87.8 1e-12
>seq16835
Length=8075
Score = 100 bits (110), Expect = 2e-16
Identities = 144/201 (72%), Gaps = 8/201 (4%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| | ||| | || |||| || ||||| |||||||| ||
Sbjct 6911 TCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAA 6970
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | || ||||||||| | || | ||| |||||||| ||||| |||||| ||
Sbjct 6971 ATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATCTTGGCTTTGAC--AT 7028
Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
| ||||| || | |||||| || | ||| || || || ||||| || || ||
Sbjct 7029 --TGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTT 7086
Query 34967 CACAAAGATCTGCATATTCGT 34987
||| ||||||||||| |||||
Sbjct 7087 CACGAAGATCTGCATCTTCGT 7107
>seq3886
Length=20373
Score = 98.7 bits (108), Expect = 6e-16
Identities = 162/232 (70%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812
|||||||||||| ||| | |||||||| | || || || || ||||| |||||||
Sbjct 12997 TTCCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCG 13056
Query 34813 --AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTG 34870
|||| | || |||| || ||||| || || ||||| || | | ||||||||| |
Sbjct 13057 CCAAAG--TGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGG 13114
Query 34871 CGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTC 34930
|| | ||||||||||| ||||| ||||| | || | || | |||
Sbjct 13115 GGGAATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTC 13174
Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||| || | ||| |||||||| || || || ||||| |||||||| ||||||
Sbjct 13175 AACCTCCAGGGTGATGGTTTTCCCGGTAAGGGTCTTAACAAAGATTTGCATA 13226
Score = 82.4 bits (90), Expect = 5e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
||||| || | ||| || ||||| ||||| ||||| | ||| | || |||| |||
Sbjct 13701 ACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCATCTTCC 13760
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| ||| ||||| ||||| || | | ||||||||| | || | || ||||| ||
Sbjct 13761 AACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGG 13820
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| |||||| | || | || | || || || | ||| || || ||
Sbjct 13821 ATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGTAATCGTCTTA 13880
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||||| ||||||||||| ||||||||||||
Sbjct 13881 CCCGTAAGAGTCTTCACGAAGATCTGCATA 13910
>seq30006
Length=21699
Score = 96.9 bits (106), Expect = 2e-15
Identities = 137/193 (71%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851
||||||||||||| || || | || | ||| |||| || ||||| |||||||| || |
Sbjct 12893 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 12834
Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911
| | ||| |||||||| | || | || |||||||| |||||| ||||||
Sbjct 12833 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGT 12774
Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971
| || | || | | ||||| || | || || || || ||||| ||||| ||||| |
Sbjct 12773 CAATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGA 12714
Query 34972 AGATCTGCATATT 34984
|||||||||| ||
Sbjct 12713 AGATCTGCATTTT 12701
>seq545
Length=31085
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|||||||| ||||||||||| | |||| | || |||| || ||||| || || |||||
Sbjct 3743 TCTTTCTGGATGTTATAGTCTGCAAGGGTGCGACCATCCTCAAGCTGCTTACCAGCAAAG 3684
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || | || || ||| | || | ||| |||||||| ||||| ||| ||
Sbjct 3683 ATGAGCCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCCTGTATCTTTGCTTTCACATTG 3624
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | ||| | ||| || || | || || || || || || ||||||||||||
Sbjct 3623 TCAATAGTATCAGAGCTCTCCACCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTCACA 3564
Query 34971 AAGATCTGCAT 34981
|||||||||||
Sbjct 3563 AAGATCTGCAT 3553
>seq572
Length=122185
Score = 87.8 bits (96), Expect = 1e-12
Identities = 93/122 (76%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 34748 ATCAT--TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTA 34805
||||| |||||||||| | ||||| ||| | ||||| || |||||||||||||||
Sbjct 87937 ATCATGGTTCCTCCCCTGAGCCTCAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTG 87996
Query 34806 TAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGG 34865
|| || | ||| ||| |||| |||| ||||||||| ||||| || |||| |||||
Sbjct 87997 TAATCAGCGAGGGTTCTCCCATCTTCCAACTGTTTTCCAGCAAAAATCAGTCTCTGCTGA 88056
Query 34866 TC 34867
||
Sbjct 88057 TC 88058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324463511268720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |