Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_015569.1
Length=178563
Score E
Sequences producing significant alignments: (Bits) Value
seq11014 208 9e-49
seq20193 183 3e-41
seq24530 145 9e-30
seq31657 118 1e-21
seq8181 111 2e-19
seq25757 87.8 2e-12
seq46 87.8 2e-12
>seq11014
Length=29319
Score = 208 bits (230), Expect = 9e-49
Identities = 281/390 (72%), Gaps = 2/390 (1%)
Strand=Plus/Minus
Query 84547 CTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAA 84606
||||||| |||| || || |||||| ||||| || |||||||| | ||| | ||
Sbjct 10444 CTGCAACAAGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCYASACGGAAGCTAA 10385
Query 84607 GTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTT 84666
| ||||| ||| ||||||||||| | | | |||| | |||||| | |||| ||||
Sbjct 10384 GCTCCCACTCAYGACCCATGTAACAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTT 10325
Query 84667 GATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGA 84726
|||||| ||||| || ||| |||||| || | ||| |||||||| || || || |
Sbjct 10324 CATAAGGACCACCGTTGAATAACCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAA 10265
Query 84727 AATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGT 84786
|||||| ||| ||||| ||| | |||| | |||||| ||||| |||||||||||||
Sbjct 10264 AATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATGTTGTTTCCGT 10205
Query 84787 ACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAA 84846
| | ||||| || | || || |||| ||||| ||||| || ||||| || ||| |||
Sbjct 10204 AAAGTAGAGACCCTGAAACAGGTTCACCAATACCATCAATGTCTACTGGAGGAGCAACAA 10145
Query 84847 CGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCA 84905
||| ||||| || || ||||| ||| || | | || || || ||||| | | |||
Sbjct 10144 TGAAGGCAATAATAAATACAGA-AGTWGCCGTCAATAAGGTAGGGATCATCAAAACACCA 10086
Query 84906 AACCAACCAACATAGATACGGTTGTTAGTG 84935
|||| |||| || | |||||| | ||||
Sbjct 10085 AACCGTCCAATGTAAAGACGGTTTTCAGTG 10056
>seq20193
Length=7469
Score = 183 bits (202), Expect = 3e-41
Identities = 271/382 (71%), Gaps = 3/382 (1%)
Strand=Plus/Plus
Query 84576 ATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAAT 84635
||||| || ||||||| ||| | | ||| ||||| ||||||||||||||| | |
Sbjct 6458 ATCCAAGGTTGCATACCCAGATGGAAGCTAAGCTCCCACTCACGACCCATGTAACAAGCT 6517
Query 84636 GCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCG 84695
| |||| | |||||| | |||| |||| |||||| ||| | || |||| ||||||
Sbjct 6518 ACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCAYCGTTGTATAACCATTCA 6577
Query 84696 TCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGA 84755
|| | || |||||||| || || || ||||||| ||| ||||| ||| | |||
Sbjct 6578 TCAACGGATGTCGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTAGGA 6637
Query 84756 ACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGG 84815
| | |||||| ||||| ||||||||||||| | ||||| || | || || |||||
Sbjct 6638 ATAATGGCACCGGAAATAATGTTGTTTCCGTDAAGTAGAGACCCTGAAACAGGTTCACGA 6697
Query 84816 ATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGC 84874
||||| ||||| || ||||| || ||| ||| ||| ||||| || || ||| | ||| ||
Sbjct 6698 ATACCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACARA-AGTTGC 6756
Query 84875 AGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGT 84934
| | || || | ||||| | | |||||||| |||| || | |||||| | |||
Sbjct 6757 CGTCAATAAGGTAGAGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT-TCAGT 6815
Query 84935 GGAGGTGACCCAATCACAGAAG 84956
| || | ||| | | |||||
Sbjct 6816 GCTAGTTATCCAGTTATAGAAG 6837
>seq24530
Length=26533
Score = 145 bits (160), Expect = 9e-30
Identities = 193/269 (72%), Gaps = 0/269 (0%)
Strand=Plus/Plus
Query 84204 TTGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATA 84263
||||| || | |||| |||||||| | | || || || | ||| | || || |||
Sbjct 527 TTGTTAAAACTATCATATTGGAAGATCAATCAGCCAAAATAAGCATGATCGGCTACGATA 586
Query 84264 TTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTA 84323
|| |||||||| || |||||| |||| ||||||| | || || |||||| |||
Sbjct 587 TTCTAAGTTTCTTCCTCTTGATCGAATCTGTAACCTTCATTAGCAGATTCATTTTATGTG 646
Query 84324 GTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCA 84383
|||| | || | | |||||| |||| |||| ||||||| | | |||||| | ||
Sbjct 647 CTTTCCCTTATAAAACTAGAAGTTACAAATGAAGCATGCATAGTACTGAATAGGGAGCCG 706
Query 84384 CCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCC 84443
| ||||||||| | || || |||||||| || |||||||||||||| || || |||
Sbjct 707 CATTTTACACCAGCTAGGCCTAAGATGTGAAATGGGTGCATAAGGATGTTGTGBTCAGCC 766
Query 84444 TGGAAGACAAGCATGTAGTTGAACGTTCC 84472
||||| |||| |||| | ||||| || ||
Sbjct 767 TGGAATACAATCATGAAATTGAAAGTACC 795
>seq31657
Length=14304
Score = 118 bits (130), Expect = 1e-21
Identities = 117/152 (77%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 84402 CCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAG 84461
|| ||||||||||| || |||||||||||||| ||||| |||||||| | || |||| |
Sbjct 433 CCTAACATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATABAATCATGAAA 374
Query 84462 TTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGA 84521
||||| || || ||||| || || ||||| |||||||| ||| ||||| |||| ||
Sbjct 373 TTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGG 314
Query 84522 TACACAAGGAATACAGCAGATGCCGCTGCAAC 84553
|| | | ||| || || | || ||||||||
Sbjct 313 TAGATCAAGAAAACTGCGGTAGCAGCTGCAAC 282
>seq8181
Length=32328
Score = 111 bits (122), Expect = 2e-19
Identities = 186/269 (69%), Gaps = 0/269 (0%)
Strand=Plus/Plus
Query 84204 TTGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATA 84263
|||||||| |||||| || ||||| | || || || | |||||| || |||
Sbjct 11813 TTGTTGAAACTAGCATATTGAAAGATTAATTTGCCAAAATAAGAATAAGCAGCTACGATA 11872
Query 84264 TTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTA 84323
|| || ||||| || |||| ||| || ||||||| | || || ||||||||||
Sbjct 11873 TTCTATGTTTCTTCCTCTTAACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 11932
Query 84324 GTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCA 84383
||||| | ||| | | |||||| || | ||| ||||||| || | ||||| | ||
Sbjct 11933 GTTTCCCTGATCAAACTAGAAGTTACCAAGGAAGCATGCATAACACATAATAGGGAGCCG 11992
Query 84384 CCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCC 84443
| ||||| ||| | || || |||||||| || |||||||||||||| | || ||
Sbjct 11993 CTTTTTACACAAGCTAGGCCTAAGATGTGAAATGGGTGCATAAGGATGTTGTACTCAGCA 12052
Query 84444 TGGAAGACAAGCATGTAGTTGAACGTTCC 84472
|||| | || |||| | ||| | || ||
Sbjct 12053 AGGAATAGAATCATGAAATTGGAAGTACC 12081
>seq25757
Length=3733
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044
||||||||||| || |||||||| ||||| |||||||||||||| ||||| || |
Sbjct 3705 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGTATATAT 3646
Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104
| ||| | ||| || || | ||||| | || || || || | | |||||||| ||
Sbjct 3645 ATATCAGTCCAAGTGTTAATTACACGACTCTGACTGTCAACTACAGATTGATTGAAATTG 3586
Query 84105 AATCCATTCAGATTAAATGCCAT 84127
|| ||||| || || || |||||
Sbjct 3585 AAACCATTTAGGTTGAAAGCCAT 3563
>seq46
Length=65133
Score = 87.8 bits (96), Expect = 2e-12
Identities = 137/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 84001 TACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAG--TACAT--CGGCCCAG 84056
||||||| ||||| |||||||||||||| ||||| || | ||||| |||||||
Sbjct 52157 TACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATGATACATATCGGCCCAA 52098
Query 84057 GTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTAAATCCATTCAGA 84116
|| || | ||| | || ||||| || | | || ||||| || || ||||| ||
Sbjct 52097 GTGTTAATTACATGACACTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGG 52038
Query 84117 TTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCACTGGCCAAGCA 84176
| || |||| | ||| | ||| | ||| | |||||| || || || || |||||||||
Sbjct 52037 GTGAAACCCATAGCGCTGATACCTAAAGCGGTAAACCAGATACCTACTACGGGCCAAGCA 51978
Query 84177 GCCAAGAAAAAGTG 84190
|| ||| |||||
Sbjct 51977 GCTCGGAAGAAGTG 51964
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570966611849200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |