Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq11014 208 9e-49 seq20193 183 3e-41 seq24530 145 9e-30 seq31657 118 1e-21 seq8181 111 2e-19 seq25757 87.8 2e-12 seq46 87.8 2e-12 >seq11014 Length=29319 Score = 208 bits (230), Expect = 9e-49 Identities = 281/390 (72%), Gaps = 2/390 (1%) Strand=Plus/Minus Query 84547 CTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAA 84606 ||||||| |||| || || |||||| ||||| || |||||||| | ||| | || Sbjct 10444 CTGCAACAAGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCYASACGGAAGCTAA 10385 Query 84607 GTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTT 84666 | ||||| ||| ||||||||||| | | | |||| | |||||| | |||| |||| Sbjct 10384 GCTCCCACTCAYGACCCATGTAACAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTT 10325 Query 84667 GATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGA 84726 |||||| ||||| || ||| |||||| || | ||| |||||||| || || || | Sbjct 10324 CATAAGGACCACCGTTGAATAACCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAA 10265 Query 84727 AATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGT 84786 |||||| ||| ||||| ||| | |||| | |||||| ||||| ||||||||||||| Sbjct 10264 AATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATGTTGTTTCCGT 10205 Query 84787 ACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAA 84846 | | ||||| || | || || |||| ||||| ||||| || ||||| || ||| ||| Sbjct 10204 AAAGTAGAGACCCTGAAACAGGTTCACCAATACCATCAATGTCTACTGGAGGAGCAACAA 10145 Query 84847 CGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCA 84905 ||| ||||| || || ||||| ||| || | | || || || ||||| | | ||| Sbjct 10144 TGAAGGCAATAATAAATACAGA-AGTWGCCGTCAATAAGGTAGGGATCATCAAAACACCA 10086 Query 84906 AACCAACCAACATAGATACGGTTGTTAGTG 84935 |||| |||| || | |||||| | |||| Sbjct 10085 AACCGTCCAATGTAAAGACGGTTTTCAGTG 10056 >seq20193 Length=7469 Score = 183 bits (202), Expect = 3e-41 Identities = 271/382 (71%), Gaps = 3/382 (1%) Strand=Plus/Plus Query 84576 ATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAAT 84635 ||||| || ||||||| ||| | | ||| ||||| ||||||||||||||| | | Sbjct 6458 ATCCAAGGTTGCATACCCAGATGGAAGCTAAGCTCCCACTCACGACCCATGTAACAAGCT 6517 Query 84636 GCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCG 84695 | |||| | |||||| | |||| |||| |||||| ||| | || |||| |||||| Sbjct 6518 ACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCAYCGTTGTATAACCATTCA 6577 Query 84696 TCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGA 84755 || | || |||||||| || || || ||||||| ||| ||||| ||| | ||| Sbjct 6578 TCAACGGATGTCGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTAGGA 6637 Query 84756 ACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGG 84815 | | |||||| ||||| ||||||||||||| | ||||| || | || || ||||| Sbjct 6638 ATAATGGCACCGGAAATAATGTTGTTTCCGTDAAGTAGAGACCCTGAAACAGGTTCACGA 6697 Query 84816 ATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGC 84874 ||||| ||||| || ||||| || ||| ||| ||| ||||| || || ||| | ||| || Sbjct 6698 ATACCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACARA-AGTTGC 6756 Query 84875 AGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGT 84934 | | || || | ||||| | | |||||||| |||| || | |||||| | ||| Sbjct 6757 CGTCAATAAGGTAGAGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT-TCAGT 6815 Query 84935 GGAGGTGACCCAATCACAGAAG 84956 | || | ||| | | ||||| Sbjct 6816 GCTAGTTATCCAGTTATAGAAG 6837 >seq24530 Length=26533 Score = 145 bits (160), Expect = 9e-30 Identities = 193/269 (72%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 84204 TTGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATA 84263 ||||| || | |||| |||||||| | | || || || | ||| | || || ||| Sbjct 527 TTGTTAAAACTATCATATTGGAAGATCAATCAGCCAAAATAAGCATGATCGGCTACGATA 586 Query 84264 TTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTA 84323 || |||||||| || |||||| |||| ||||||| | || || |||||| ||| Sbjct 587 TTCTAAGTTTCTTCCTCTTGATCGAATCTGTAACCTTCATTAGCAGATTCATTTTATGTG 646 Query 84324 GTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCA 84383 |||| | || | | |||||| |||| |||| ||||||| | | |||||| | || Sbjct 647 CTTTCCCTTATAAAACTAGAAGTTACAAATGAAGCATGCATAGTACTGAATAGGGAGCCG 706 Query 84384 CCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCC 84443 | ||||||||| | || || |||||||| || |||||||||||||| || || ||| Sbjct 707 CATTTTACACCAGCTAGGCCTAAGATGTGAAATGGGTGCATAAGGATGTTGTGBTCAGCC 766 Query 84444 TGGAAGACAAGCATGTAGTTGAACGTTCC 84472 ||||| |||| |||| | ||||| || || Sbjct 767 TGGAATACAATCATGAAATTGAAAGTACC 795 >seq31657 Length=14304 Score = 118 bits (130), Expect = 1e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 84402 CCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAG 84461 || ||||||||||| || |||||||||||||| ||||| |||||||| | || |||| | Sbjct 433 CCTAACATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATABAATCATGAAA 374 Query 84462 TTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGA 84521 ||||| || || ||||| || || ||||| |||||||| ||| ||||| |||| || Sbjct 373 TTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGG 314 Query 84522 TACACAAGGAATACAGCAGATGCCGCTGCAAC 84553 || | | ||| || || | || |||||||| Sbjct 313 TAGATCAAGAAAACTGCGGTAGCAGCTGCAAC 282 >seq8181 Length=32328 Score = 111 bits (122), Expect = 2e-19 Identities = 186/269 (69%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 84204 TTGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATA 84263 |||||||| |||||| || ||||| | || || || | |||||| || ||| Sbjct 11813 TTGTTGAAACTAGCATATTGAAAGATTAATTTGCCAAAATAAGAATAAGCAGCTACGATA 11872 Query 84264 TTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTA 84323 || || ||||| || |||| ||| || ||||||| | || || |||||||||| Sbjct 11873 TTCTATGTTTCTTCCTCTTAACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 11932 Query 84324 GTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCA 84383 ||||| | ||| | | |||||| || | ||| ||||||| || | ||||| | || Sbjct 11933 GTTTCCCTGATCAAACTAGAAGTTACCAAGGAAGCATGCATAACACATAATAGGGAGCCG 11992 Query 84384 CCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCC 84443 | ||||| ||| | || || |||||||| || |||||||||||||| | || || Sbjct 11993 CTTTTTACACAAGCTAGGCCTAAGATGTGAAATGGGTGCATAAGGATGTTGTACTCAGCA 12052 Query 84444 TGGAAGACAAGCATGTAGTTGAACGTTCC 84472 |||| | || |||| | ||| | || || Sbjct 12053 AGGAATAGAATCATGAAATTGGAAGTACC 12081 >seq25757 Length=3733 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||||| |||||||||||||| ||||| || | Sbjct 3705 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGTATATAT 3646 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| | ||| || || | ||||| | || || || || | | |||||||| || Sbjct 3645 ATATCAGTCCAAGTGTTAATTACACGACTCTGACTGTCAACTACAGATTGATTGAAATTG 3586 Query 84105 AATCCATTCAGATTAAATGCCAT 84127 || ||||| || || || ||||| Sbjct 3585 AAACCATTTAGGTTGAAAGCCAT 3563 >seq46 Length=65133 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 84001 TACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAG--TACAT--CGGCCCAG 84056 ||||||| ||||| |||||||||||||| ||||| || | ||||| ||||||| Sbjct 52157 TACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATGATACATATCGGCCCAA 52098 Query 84057 GTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTAAATCCATTCAGA 84116 || || | ||| | || ||||| || | | || ||||| || || ||||| || Sbjct 52097 GTGTTAATTACATGACACTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGG 52038 Query 84117 TTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCACTGGCCAAGCA 84176 | || |||| | ||| | ||| | ||| | |||||| || || || || ||||||||| Sbjct 52037 GTGAAACCCATAGCGCTGATACCTAAAGCGGTAAACCAGATACCTACTACGGGCCAAGCA 51978 Query 84177 GCCAAGAAAAAGTG 84190 || ||| ||||| Sbjct 51977 GCTCGGAAGAAGTG 51964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570966611849200