Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq728 138 1e-27 seq30480 105 8e-18 >seq728 Length=46982 Score = 138 bits (152), Expect = 1e-27 Identities = 559/874 (64%), Gaps = 9/874 (1%) Strand=Plus/Plus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| ||||| || ||||||| || |||||||||||||| || || | ||| || Sbjct 1957 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAG 2016 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| ||||||||||||| | |||| || || || | | || || | | Sbjct 2017 CTCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAA 2076 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 | ||| || |||||||| | || ||| | |||||| ||| | ||||||||| | | Sbjct 2077 CAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCTCCATTCATTCCCACCAG 2136 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 | ||| || ||||| | || || |||||| | || || |||| | ||| Sbjct 2137 AGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAACAAT 2196 Query 18909 AGATACAACTCTATCTTCA-TTAGGAGGGTA--TAGAAGATGTTTAAACATCAAACATGC 18965 |||| || ||| |||| || ||| | | | |||| |||||| || Sbjct 2197 TCCCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAGCAAAC-TGTAAAG--CAAACACGC 2253 Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025 ||||||||| || | || |||||||| || || ||||| || || ||||| ||||| Sbjct 2254 AAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCAGG 2313 Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACC 19085 ||| | || | |||||| ||||| ||||| ||| || ||| ||||| || || Sbjct 2314 CATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATCCC 2373 Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCA 19145 ||| || |||||||| || | | |||| | | || || ||||| Sbjct 2374 TTCAACACAGGCAAAAGCCACCAAAC--GCTCCGCGA-AGGTTTCGGACCCATCGATCCA 2430 Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 || ||||| | |||||||||| ||||| || |||||||| || | | || | Sbjct 2431 ACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATCGCACGGAACAA 2490 Query 19206 ATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGA 19265 | | || || | ||| || | || | || | || ||||||||||| || || Sbjct 2491 TTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACATCTCGGA 2550 Query 19266 ATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTAC 19325 ||| ||||| || || || || || || || || ||| | | || | | ||| || Sbjct 2551 ATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAACCTCGGCAACCTGGAC 2610 Query 19326 TTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAA 19385 || | || ||| | | | || || ||| || || || || |||||||| Sbjct 2611 GTCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCAGCAAAAAA 2670 Query 19386 TGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAAT 19445 || | ||||| | || ||||| ||||| | || |||| | | ||| | | | | Sbjct 2671 GGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAGTGACGAGT 2730 Query 19446 ATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACAT 19505 ||| | || | ||| |||||||| || ||||| ||||| ||| ||||| || ||||| Sbjct 2731 ATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTGTACAT 2790 Query 19506 GTTCCATATATCACGATATTGTATAGGAAATATA 19539 | ||| || | |||| || || || || ||| Sbjct 2791 TTCCCAAATCTGTGGATACTGAATTGGGAACATA 2824 >seq30480 Length=20585 Score = 105 bits (116), Expect = 8e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| || | |||||||| |||||||||||||||| | ||||| | || | ||| | Sbjct 14637 AGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGAGACATCAAATG 14578 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718 |||||| | || ||||| || |||||| || || || || | |||||| | ||| | Sbjct 14577 ATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGATACTCTCATCAG 14518 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||||| ||| || ||||| ||||| || | || || ||||| || || |||| | Sbjct 14517 CATATGTTGTGGCCTTTCCACAATCTTTCCCTGAATCTTTAAAAGGTAAGACCTTTCAAG 14458 Query 48779 TGTTTTAAAACCAAAATA 48796 ||||| |||||||| || Sbjct 14457 GGTTTTGAAACCAAAGTA 14440 Score = 100 bits (110), Expect = 3e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||| |||||||| | |||||||||||||| ||| | || | | ||| || ||||| || Sbjct 15056 ACCCCCTTGATCAACATATCTGGCAGTATCATTAAACACACGCAGCATAGGAACAATCCC 14997 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||||||| | || || ||||| ||||||||| ||| |||| | ||| || | || Sbjct 14996 ATTTGATGTTCCGTTTGTTCCACGAATATAACTCCCAGTAGCACGTATGTTGTGCACAGA 14937 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACA--CCGTTTAAGGGTATCATAA 48536 | || || || || || ||| || | |||||| ||| |||| |||||||| Sbjct 14936 TACGCCAATTCCCCCAGCTGATTTGCTAATAACAGCACATTCCG--TAAGAGTATCATAT 14879 Query 48537 ATTCCTTCTATACTATCATCTATCAT 48562 || || || || ||||||||| |||| Sbjct 14878 ATGCCCTCAATGCTATCATCTTTCAT 14853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561806736783600