Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_016656.1
Length=45890
Score E
Sequences producing significant alignments: (Bits) Value
seq11014 152 2e-32
seq20193 143 8e-30
seq31657 116 1e-21
seq46 96.9 1e-15
seq25757 91.5 4e-14
seq3149 82.4 2e-11
>seq11014
Length=29319
Score = 152 bits (168), Expect = 2e-32
Identities = 267/383 (70%), Gaps = 6/383 (2%)
Strand=Plus/Plus
Query 25820 AGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTACTC 25879
|| ||||| |||||||| || | ||| |||| || || | ||||| || |||| |
Sbjct 10054 AGCACTGAAAACCGTCTTTACATTGGACGGTTTGGTGTTTTGATGATCCCTACCTTATTG 10113
Query 25880 GCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGG 25938
| || ||| | ||| ||||| |||||||||| | || || || ||||| || |||||
Sbjct 10114 ACGGCWACTTC-TGTATTTATTATTGCCTTCATTGTTGCTCCTCCAGTAGACATTGATGG 10172
Query 25939 CATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGT 25998
|| |||| || ||||| || || || | ||||||||||| || || || || || |
Sbjct 10173 TATTGGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAACATTATTTCCGGTGCCAT 10232
Query 25999 CGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCA-CAC 26057
| || | ||| || || || ||||||||||||| ||||||||||| |||| |
Sbjct 10233 TATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGC-GGCATCCG 10291
Query 26058 TGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAG 26117
| || || ||| ||| ||| || || || ||| |||| ||| | | ||||||||| | |
Sbjct 10292 TTGATGAATGGTTATTCAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTG 10351
Query 26118 GAGTAGCAGCATATGCAGGGAGACAGTGGGAAC-TATCTTACAGACTAGGAATGAGACCA 26176
| ||||| || || ||||||| | || ||| | | | || ||| ||||
Sbjct 10352 GCGTAGCTTGTTACATGGGTCRTGAGTGGGAGCTTAGCTT-CCGTSTRGGTATGCGACCT 10410
Query 26177 TGGATATTTGTTGCATATACAGC 26199
||||| |||||||||| ||||
Sbjct 10411 TGGATTGCTGTTGCATATTCAGC 10433
>seq20193
Length=7469
Score = 143 bits (158), Expect = 8e-30
Identities = 224/316 (71%), Gaps = 5/316 (2%)
Strand=Plus/Minus
Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870
||| | || || ||||| |||||||| || | |||||||| || || | ||||| |
Sbjct 6827 TGGATAACTAGCACTGA-AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCTCT 6769
Query 25871 TGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGA 25929
|||| | | || ||| ||| ||||| |||||||||| || || || || |||||
Sbjct 6768 ACCTTATTGACGGCAACTTY-TGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGA 6710
Query 25930 TATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATC 25989
|| ||||| || ||||| || ||||| || || || | |||||||||| || || ||
Sbjct 6709 CATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTHACGGAAACAACATTATTTC 6650
Query 25990 AGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGC 26049
|| || | | || | ||| || || || ||||||||||||| |||||||||||
Sbjct 6649 CGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGC 6590
Query 26050 TGGCA-CACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACT 26108
| || | | || || ||| ||||||| | || || ||| |||| ||| | | ||||
Sbjct 6589 -GACATCCGTTGATGAATGGTTATACAACGRTGGTCCTTATGAACTAATTGTTCTACACT 6531
Query 26109 TCTTAATAGGAGTAGC 26124
||||| | || |||||
Sbjct 6530 TCTTACTTGGCGTAGC 6515
>seq31657
Length=14304
Score = 116 bits (128), Expect = 1e-21
Identities = 110/141 (78%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 26210 GCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATG 26269
|| ||| |||||| ||||| | || || |||| ||||| |||||| |||||| |||
Sbjct 288 GCTGCTACCGCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATG 347
Query 26270 CCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATA 26329
||||| || |||||||||||||| || || ||| | ||||||| || ||||| || ||
Sbjct 348 CCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTVTATTCCAGGCTGAACACAACATC 407
Query 26330 CTCATGCACCCATTCCATATG 26350
|| ||||||||||| || |||
Sbjct 408 CTTATGCACCCATTTCACATG 428
>seq46
Length=65133
Score = 96.9 bits (106), Expect = 1e-15
Identities = 141/195 (72%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 26567 CATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGC 26626
|| ||||| | ||| ||||||| || || || || ||| | || || | |||||| ||
Sbjct 51964 CACTTCTTCCGAGCTGCTTGGCCCGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGC 52023
Query 26627 ACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGG 26685
| |||| || | |||||||||||| || || ||||| || ||||| ||| || | ||
Sbjct 52024 GCTATGGGTTTCACCCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAGTGT 52083
Query 26686 AAAGATAATACCTACATGGGCTG--ATGTAT--TAAACCGAGCTAACCTCGGCTTTGAAG 26741
| | |||| || ||||| | |||||| | ||||| |||||||| || | ||||
Sbjct 52084 CATG-TAATTAACACTTGGGCCGATATGTATCATCAACCGTGCTAACCTTGGTATGGAAG 52142
Query 26742 TTATGCACGAGCGTA 26756
||||||| || ||||
Sbjct 52143 TTATGCATGAACGTA 52157
>seq25757
Length=3733
Score = 91.5 bits (100), Expect = 4e-14
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 26630 ATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAG 26689
||||| || |||||||||||||| || || || || || ||||| || | | |
Sbjct 3563 ATGGCTTTCAACCTAAATGGTTTCAATTTCAATCAATCTGTAGTTGACAGTCAGAGTCGT 3622
Query 26690 ATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCAC 26749
|||| || ||| ||||| ||| | || |||||||| || | |||||||||||
Sbjct 3623 GTAATTAACACTTGGACTGATATATATATACGTGCTAACCTTGGTATGGAAGTTATGCAT 3682
Query 26750 GAGCGTAATGCTCATAACTTTCCACTTGACTTAGC 26784
|| ||||||||||||||||| || || ||| ||||
Sbjct 3683 GAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 3717
>seq3149
Length=150756
Score = 82.4 bits (90), Expect = 2e-11
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 26218 CGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGG 26277
|||||| ||||| | || || |||| |||| |||||| |||||| |||||||| ||
Sbjct 11597 CGCAGTATTCTTGATCTACCCAATCGGTTAAGGAAGTTTTTCTGATGGTATGCCTCTAGG 11656
Query 26278 TATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCA 26317
|||||||||||||| || | ||| | ||||||||| ||
Sbjct 11657 AATCTCTGGTACTTTCAATTACATGATTGTATTCCAACCA 11696
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146651495255760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |