Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq11014 152 2e-32 seq20193 143 8e-30 seq31657 116 1e-21 seq46 96.9 1e-15 seq25757 91.5 4e-14 seq3149 82.4 2e-11 >seq11014 Length=29319 Score = 152 bits (168), Expect = 2e-32 Identities = 267/383 (70%), Gaps = 6/383 (2%) Strand=Plus/Plus Query 25820 AGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTACTC 25879 || ||||| |||||||| || | ||| |||| || || | ||||| || |||| | Sbjct 10054 AGCACTGAAAACCGTCTTTACATTGGACGGTTTGGTGTTTTGATGATCCCTACCTTATTG 10113 Query 25880 GCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGG 25938 | || ||| | ||| ||||| |||||||||| | || || || ||||| || ||||| Sbjct 10114 ACGGCWACTTC-TGTATTTATTATTGCCTTCATTGTTGCTCCTCCAGTAGACATTGATGG 10172 Query 25939 CATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGT 25998 || |||| || ||||| || || || | ||||||||||| || || || || || | Sbjct 10173 TATTGGTGAACCTGTTTCAGGGTCTCTACTTTACGGAAACAACATTATTTCCGGTGCCAT 10232 Query 25999 CGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCA-CAC 26057 | || | ||| || || || ||||||||||||| ||||||||||| |||| | Sbjct 10233 TATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGC-GGCATCCG 10291 Query 26058 TGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAG 26117 | || || ||| ||| ||| || || || ||| |||| ||| | | ||||||||| | | Sbjct 10292 TTGATGAATGGTTATTCAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTG 10351 Query 26118 GAGTAGCAGCATATGCAGGGAGACAGTGGGAAC-TATCTTACAGACTAGGAATGAGACCA 26176 | ||||| || || ||||||| | || ||| | | | || ||| |||| Sbjct 10352 GCGTAGCTTGTTACATGGGTCRTGAGTGGGAGCTTAGCTT-CCGTSTRGGTATGCGACCT 10410 Query 26177 TGGATATTTGTTGCATATACAGC 26199 ||||| |||||||||| |||| Sbjct 10411 TGGATTGCTGTTGCATATTCAGC 10433 >seq20193 Length=7469 Score = 143 bits (158), Expect = 8e-30 Identities = 224/316 (71%), Gaps = 5/316 (2%) Strand=Plus/Minus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | || || ||||| |||||||| || | |||||||| || || | ||||| | Sbjct 6827 TGGATAACTAGCACTGA-AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCTCT 6769 Query 25871 TGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGA 25929 |||| | | || ||| ||| ||||| |||||||||| || || || || ||||| Sbjct 6768 ACCTTATTGACGGCAACTTY-TGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGA 6710 Query 25930 TATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATC 25989 || ||||| || ||||| || ||||| || || || | |||||||||| || || || Sbjct 6709 CATTGATGGTATTCGTGAACCTGTTTCAGGGTCTCTACTTHACGGAAACAACATTATTTC 6650 Query 25990 AGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGC 26049 || || | | || | ||| || || || ||||||||||||| ||||||||||| Sbjct 6649 CGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTACATTTTTACCCAATCTGGGAAGC 6590 Query 26050 TGGCA-CACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACT 26108 | || | | || || ||| ||||||| | || || ||| |||| ||| | | |||| Sbjct 6589 -GACATCCGTTGATGAATGGTTATACAACGRTGGTCCTTATGAACTAATTGTTCTACACT 6531 Query 26109 TCTTAATAGGAGTAGC 26124 ||||| | || ||||| Sbjct 6530 TCTTACTTGGCGTAGC 6515 >seq31657 Length=14304 Score = 116 bits (128), Expect = 1e-21 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 26210 GCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATG 26269 || ||| |||||| ||||| | || || |||| ||||| |||||| |||||| ||| Sbjct 288 GCTGCTACCGCAGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATG 347 Query 26270 CCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATA 26329 ||||| || |||||||||||||| || || ||| | ||||||| || ||||| || || Sbjct 348 CCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTVTATTCCAGGCTGAACACAACATC 407 Query 26330 CTCATGCACCCATTCCATATG 26350 || ||||||||||| || ||| Sbjct 408 CTTATGCACCCATTTCACATG 428 >seq46 Length=65133 Score = 96.9 bits (106), Expect = 1e-15 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 26567 CATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGC 26626 || ||||| | ||| ||||||| || || || || ||| | || || | |||||| || Sbjct 51964 CACTTCTTCCGAGCTGCTTGGCCCGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGC 52023 Query 26627 ACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGG 26685 | |||| || | |||||||||||| || || ||||| || ||||| ||| || | || Sbjct 52024 GCTATGGGTTTCACCCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAGTGT 52083 Query 26686 AAAGATAATACCTACATGGGCTG--ATGTAT--TAAACCGAGCTAACCTCGGCTTTGAAG 26741 | | |||| || ||||| | |||||| | ||||| |||||||| || | |||| Sbjct 52084 CATG-TAATTAACACTTGGGCCGATATGTATCATCAACCGTGCTAACCTTGGTATGGAAG 52142 Query 26742 TTATGCACGAGCGTA 26756 ||||||| || |||| Sbjct 52143 TTATGCATGAACGTA 52157 >seq25757 Length=3733 Score = 91.5 bits (100), Expect = 4e-14 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 26630 ATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAG 26689 ||||| || |||||||||||||| || || || || || ||||| || | | | Sbjct 3563 ATGGCTTTCAACCTAAATGGTTTCAATTTCAATCAATCTGTAGTTGACAGTCAGAGTCGT 3622 Query 26690 ATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCAC 26749 |||| || ||| ||||| ||| | || |||||||| || | ||||||||||| Sbjct 3623 GTAATTAACACTTGGACTGATATATATATACGTGCTAACCTTGGTATGGAAGTTATGCAT 3682 Query 26750 GAGCGTAATGCTCATAACTTTCCACTTGACTTAGC 26784 || ||||||||||||||||| || || ||| |||| Sbjct 3683 GAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 3717 >seq3149 Length=150756 Score = 82.4 bits (90), Expect = 2e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 26218 CGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGG 26277 |||||| ||||| | || || |||| |||| |||||| |||||| |||||||| || Sbjct 11597 CGCAGTATTCTTGATCTACCCAATCGGTTAAGGAAGTTTTTCTGATGGTATGCCTCTAGG 11656 Query 26278 TATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCA 26317 |||||||||||||| || | ||| | ||||||||| || Sbjct 11657 AATCTCTGGTACTTTCAATTACATGATTGTATTCCAACCA 11696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146651495255760