Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_016657.1
Length=47055
Score E
Sequences producing significant alignments: (Bits) Value
seq11014 174 5e-39
seq20193 163 9e-36
seq31657 127 6e-25
seq25757 96.9 1e-15
seq20218 86.0 2e-12
seq3149 82.4 2e-11
>seq11014
Length=29319
Score = 174 bits (192), Expect = 5e-39
Identities = 266/382 (70%), Gaps = 0/382 (0%)
Strand=Plus/Minus
Query 36547 CTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAA 36606
|||||||| | |||||||| || ||| ||||| || | |||||| | | | ||||
Sbjct 10444 CTGCAACAAGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCYASACGGAAGCTAA 10385
Query 36607 GTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTT 36666
| ||||| | | |||| |||| | | |||| | ||||| | ||||| ||||
Sbjct 10384 GCTCCCACTCAYGACCCATGTAACAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTT 10325
Query 36667 GATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGA 36726
||| || || ||||| ||||||| || || | || ||| ||||||||||||||||| |
Sbjct 10324 CATAAGGACCACCGTTGAATAACCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAA 10265
Query 36727 AGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCAT 36786
| || | ||| || || || | || | || || || || || ||||||||||| |
Sbjct 10264 AATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATGTTGTTTCCGT 10205
Query 36787 AGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAA 36846
| |||| | ||||| ||||| |||| ||||||||| || || || ||||| ||| |||
Sbjct 10204 AAAGTAGAGACCCTGAAACAGGTTCACCAATACCATCAATGTCTACTGGAGGAGCAACAA 10145
Query 36847 CAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAA 36906
|| ||||| | |||| | | || || || | | ||||||||| | || ||||
Sbjct 10144 TGAAGGCAATAATAAATACAGAAGTWGCCGTCAATAAGGTAGGGATCATCAAAACACCAA 10085
Query 36907 ACCACCCCACATAGAGGCGGTT 36928
||| || | || || |||||
Sbjct 10084 ACCGTCCAATGTAAAGACGGTT 10063
>seq20193
Length=7469
Score = 163 bits (180), Expect = 9e-36
Identities = 311/463 (67%), Gaps = 23/463 (5%)
Strand=Plus/Plus
Query 36508 CTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAG 36567
|||| |||| ||||||| |||||| || || || ||||||||||| |||||||| |
Sbjct 6368 CTTGACCAATTGGGTAGATTAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATG 6427
Query 36568 CTACA--------------CATA--------TCCACGGCCTCATACCTAGTCTATAACTA 36605
| ||| |||| |||| || |||||| || | |||
Sbjct 6428 CAACAGCAATCCAAAGTTGCATACCCAGCAATCCAAGGTTGCATACCCAGATGGAAGCTA 6487
Query 36606 AGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGT 36665
|| ||||| | || |||| |||| | | |||| | ||||| | ||||| |||
Sbjct 6488 AGCTCCCACTCACGACCCATGTAACAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGT 6547
Query 36666 TGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAG 36725
| ||| || || |||| |||||||| || || | || || |||||||||||||||||
Sbjct 6548 TCATAAGGACCAYCGTTGTATAACCATTCATCAACGGATGTCGCTTCCCAGATTGGGTAA 6607
Query 36726 AAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCA 36785
|| || | ||| || || || | || | || || || || || |||||||||||
Sbjct 6608 AAATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATGTTGTTTCCG 6667
Query 36786 TAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCA 36845
| |||| | ||||| ||||| |||||||||||||| || || || ||||| ||||||
Sbjct 6668 TDAAGTAGAGACCCTGAAACAGGTTCACGAATACCATCAATGTCTACTGGAGGAGCAGCA 6727
Query 36846 ACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCA 36905
| || ||||| | |||| | ||| || || | | || |||||| | || |||
Sbjct 6728 ATGAAGGCAATAATAAATACARAAGTTGCCGTCAATAAGGTAGAGATCATCAAAACACCA 6787
Query 36906 AACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGT 36948
||||| || | || || ||||| | || || || | |||||
Sbjct 6788 AACCATCCAATGTAAAGACGGTT-TCAGTGCTAGTTATCCAGT 6829
>seq31657
Length=14304
Score = 127 bits (140), Expect = 6e-25
Identities = 116/147 (79%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 36407 CATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAA 36466
||| || || || ||||||||||| |||||||| ||||| || | || ||| ||||||||
Sbjct 428 CATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATABAATCATGAAATTGAA 369
Query 36467 AGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGAC 36526
||| || || || || ||||||||||||||||| ||||| ||||| || | |||||||
Sbjct 368 AGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGAT 309
Query 36527 TAAGAATACAGCAAATGCTGCTGCAAC 36553
||||| || || || ||||||||
Sbjct 308 CAAGAAAACTGCGGTAGCAGCTGCAAC 282
>seq25757
Length=3733
Score = 96.9 bits (106), Expect = 1e-15
Identities = 122/166 (73%), Gaps = 10/166 (6%)
Strand=Plus/Minus
Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028
||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || |
Sbjct 3721 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 3662
Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGT-----TGGGACGACTCTTCCGTTGGAATCA 36083
|| ||||| || || |||| |||||| | |||||||| | || |||
Sbjct 3661 GTTAGCACGTATATATATATCAGTCCAAGTGTTAATTACACGACTCTGAC--TG---TCA 3607
Query 36084 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAG 36129
|| || || |||||||| || || || || || || ||||||||||
Sbjct 3606 ACTACAGATTGATTGAAATTGAAACCATTTAGGTTGAAAGCCATAG 3561
>seq20218
Length=9351
Score = 86.0 bits (94), Expect = 2e-12
Identities = 73/90 (81%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028
||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || |
Sbjct 2211 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 2152
Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGT 36058
|| |||||||| | || ||| |||||||
Sbjct 2151 GTTAGCACGGTTGATGATATCAACCCAAGT 2122
>seq3149
Length=150756
Score = 82.4 bits (90), Expect = 2e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 36444 TGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 36503
|| || |||| ||| |||||||||| || || || || ||||||||||||||||| |||
Sbjct 11692 TGGAATACAATCATGTAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAA 11633
Query 36504 CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGC 36538
|| |||| || | ||||||| |||||||| ||
Sbjct 11632 CTTCCTTAACCGATTGGGTAGATCAAGAATACTGC 11598
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 150377592088460
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |