Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq11014 174 5e-39 seq20193 163 9e-36 seq31657 127 6e-25 seq25757 96.9 1e-15 seq20218 86.0 2e-12 seq3149 82.4 2e-11 >seq11014 Length=29319 Score = 174 bits (192), Expect = 5e-39 Identities = 266/382 (70%), Gaps = 0/382 (0%) Strand=Plus/Minus Query 36547 CTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAA 36606 |||||||| | |||||||| || ||| ||||| || | |||||| | | | |||| Sbjct 10444 CTGCAACAAGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCYASACGGAAGCTAA 10385 Query 36607 GTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTT 36666 | ||||| | | |||| |||| | | |||| | ||||| | ||||| |||| Sbjct 10384 GCTCCCACTCAYGACCCATGTAACAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTT 10325 Query 36667 GATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGA 36726 ||| || || ||||| ||||||| || || | || ||| ||||||||||||||||| | Sbjct 10324 CATAAGGACCACCGTTGAATAACCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAA 10265 Query 36727 AGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCAT 36786 | || | ||| || || || | || | || || || || || ||||||||||| | Sbjct 10264 AATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATGTTGTTTCCGT 10205 Query 36787 AGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAA 36846 | |||| | ||||| ||||| |||| ||||||||| || || || ||||| ||| ||| Sbjct 10204 AAAGTAGAGACCCTGAAACAGGTTCACCAATACCATCAATGTCTACTGGAGGAGCAACAA 10145 Query 36847 CAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAA 36906 || ||||| | |||| | | || || || | | ||||||||| | || |||| Sbjct 10144 TGAAGGCAATAATAAATACAGAAGTWGCCGTCAATAAGGTAGGGATCATCAAAACACCAA 10085 Query 36907 ACCACCCCACATAGAGGCGGTT 36928 ||| || | || || ||||| Sbjct 10084 ACCGTCCAATGTAAAGACGGTT 10063 >seq20193 Length=7469 Score = 163 bits (180), Expect = 9e-36 Identities = 311/463 (67%), Gaps = 23/463 (5%) Strand=Plus/Plus Query 36508 CTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAG 36567 |||| |||| ||||||| |||||| || || || ||||||||||| |||||||| | Sbjct 6368 CTTGACCAATTGGGTAGATTAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATG 6427 Query 36568 CTACA--------------CATA--------TCCACGGCCTCATACCTAGTCTATAACTA 36605 | ||| |||| |||| || |||||| || | ||| Sbjct 6428 CAACAGCAATCCAAAGTTGCATACCCAGCAATCCAAGGTTGCATACCCAGATGGAAGCTA 6487 Query 36606 AGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGT 36665 || ||||| | || |||| |||| | | |||| | ||||| | ||||| ||| Sbjct 6488 AGCTCCCACTCACGACCCATGTAACAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGT 6547 Query 36666 TGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAG 36725 | ||| || || |||| |||||||| || || | || || ||||||||||||||||| Sbjct 6548 TCATAAGGACCAYCGTTGTATAACCATTCATCAACGGATGTCGCTTCCCAGATTGGGTAA 6607 Query 36726 AAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCA 36785 || || | ||| || || || | || | || || || || || ||||||||||| Sbjct 6608 AAATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATGTTGTTTCCG 6667 Query 36786 TAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCA 36845 | |||| | ||||| ||||| |||||||||||||| || || || ||||| |||||| Sbjct 6668 TDAAGTAGAGACCCTGAAACAGGTTCACGAATACCATCAATGTCTACTGGAGGAGCAGCA 6727 Query 36846 ACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCA 36905 | || ||||| | |||| | ||| || || | | || |||||| | || ||| Sbjct 6728 ATGAAGGCAATAATAAATACARAAGTTGCCGTCAATAAGGTAGAGATCATCAAAACACCA 6787 Query 36906 AACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGT 36948 ||||| || | || || ||||| | || || || | ||||| Sbjct 6788 AACCATCCAATGTAAAGACGGTT-TCAGTGCTAGTTATCCAGT 6829 >seq31657 Length=14304 Score = 127 bits (140), Expect = 6e-25 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 36407 CATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAA 36466 ||| || || || ||||||||||| |||||||| ||||| || | || ||| |||||||| Sbjct 428 CATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATABAATCATGAAATTGAA 369 Query 36467 AGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGAC 36526 ||| || || || || ||||||||||||||||| ||||| ||||| || | ||||||| Sbjct 368 AGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGAT 309 Query 36527 TAAGAATACAGCAAATGCTGCTGCAAC 36553 ||||| || || || |||||||| Sbjct 308 CAAGAAAACTGCGGTAGCAGCTGCAAC 282 >seq25757 Length=3733 Score = 96.9 bits (106), Expect = 1e-15 Identities = 122/166 (73%), Gaps = 10/166 (6%) Strand=Plus/Minus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || | Sbjct 3721 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 3662 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGT-----TGGGACGACTCTTCCGTTGGAATCA 36083 || ||||| || || |||| |||||| | |||||||| | || ||| Sbjct 3661 GTTAGCACGTATATATATATCAGTCCAAGTGTTAATTACACGACTCTGAC--TG---TCA 3607 Query 36084 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAG 36129 || || || |||||||| || || || || || || |||||||||| Sbjct 3606 ACTACAGATTGATTGAAATTGAAACCATTTAGGTTGAAAGCCATAG 3561 >seq20218 Length=9351 Score = 86.0 bits (94), Expect = 2e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || | Sbjct 2211 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 2152 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGT 36058 || |||||||| | || ||| ||||||| Sbjct 2151 GTTAGCACGGTTGATGATATCAACCCAAGT 2122 >seq3149 Length=150756 Score = 82.4 bits (90), Expect = 2e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 36444 TGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 36503 || || |||| ||| |||||||||| || || || || ||||||||||||||||| ||| Sbjct 11692 TGGAATACAATCATGTAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAA 11633 Query 36504 CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGC 36538 || |||| || | ||||||| |||||||| || Sbjct 11632 CTTCCTTAACCGATTGGGTAGATCAAGAATACTGC 11598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150377592088460