Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_016658.1
Length=47741
Score E
Sequences producing significant alignments: (Bits) Value
seq11014 181 3e-41
seq20193 170 6e-38
seq31657 129 2e-25
seq25757 105 2e-18
seq20218 102 2e-17
seq46 100 9e-17
seq3149 80.6 8e-11
>seq11014
Length=29319
Score = 181 bits (200), Expect = 3e-41
Identities = 276/393 (70%), Gaps = 4/393 (1%)
Strand=Plus/Minus
Query 5771 GCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGT 5830
||||| | ||||||||||| || |||||| |||||||| || | | | | |||||
Sbjct 10442 GCAACAAGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCYASACGGAAGCTAAGC 10383
Query 5831 TCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGG 5890
||||| | | |||| |||| || | |||| | |||||| | || | ||||
Sbjct 10382 TCCCACTCAYGACCCATGTAACAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTTCA 10323
Query 5891 TATGGTCCTCCATTGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGA 5948
|| || || || ||| | | ||||||||| | ||| || ||||||||||| || || |
Sbjct 10322 TAAGGACCACCGTTGAATAACCATTCATCAACGGAT--GCCGCTTCCCAGATTGGGTAAA 10265
Query 5949 AGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCAT 6008
| ||||| || || || || | || | || ||| || || || ||||||||||| |
Sbjct 10264 AATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATGTTGTTTCCGT 10205
Query 6009 AGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTA 6068
| |||||||| |||| || ||||||| || || || ||||| ||||| || ||| | |
Sbjct 10204 AAAGTAGAGACCCTGAAACAGGTTCACCAATACCATCAATGTCTACTGGAGGAGCAACAA 10145
Query 6069 CGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAA 6128
||| || | |||||| ||| ||| || || || | | || ||||| || |||||||
Sbjct 10144 TGAAGGCAATAATAAATACAGAAGTWGCCGTCAATAAGGTAGGGATCATCAAAACACCAA 10085
Query 6129 ACCACCCCACATAGAGGCGGTTGTTGGTGCTAG 6161
||| || | || || ||||| | |||||||
Sbjct 10084 ACCGTCCAATGTAAAGACGGTTTTCAGTGCTAG 10052
>seq20193
Length=7469
Score = 170 bits (188), Expect = 6e-38
Identities = 268/382 (70%), Gaps = 3/382 (1%)
Strand=Plus/Plus
Query 5797 AATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGC 5856
|||||| ||| |||| || | | | ||||| ||||| | || |||| |||| ||
Sbjct 6457 AATCCAAGGTTGCATACCCAGATGGAAGCTAAGCTCCCACTCACGACCCATGTAACAAGC 6516
Query 5857 GATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTC 5916
| |||| | |||||| | || | |||| || || || | ||||| | ||||||
Sbjct 6517 TACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCAYCGTTGTATAACCATTC 6576
Query 5917 ATCGA-GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGG 5975
||| | | || | ||||||||||| || || || ||||| || || || || | |
Sbjct 6577 ATCAACGGATGTC-GCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTAG 6635
Query 5976 GTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCAC 6035
| | || ||| || || || ||||||||||| | |||||||| |||| || |||||||
Sbjct 6636 GAATAATGGCACCGGAAATAATGTTGTTTCCGTDAAGTAGAGACCCTGAAACAGGTTCAC 6695
Query 6036 GTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTG 6095
| || || || ||||| ||||| || ||||| | ||| || | |||||| || |||||
Sbjct 6696 GAATACCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACARAAGTTG 6755
Query 6096 CGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGG 6155
| || || | | | ||||| || ||||||||||| || | || || ||||| | |
Sbjct 6756 CCGTCAATAAGGTAGAGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT-TCAG 6814
Query 6156 TGCTAGTAACCCAGTCACAGAA 6177
||||||| | ||||| | ||||
Sbjct 6815 TGCTAGTTATCCAGTTATAGAA 6836
>seq31657
Length=14304
Score = 129 bits (142), Expect = 2e-25
Identities = 117/148 (79%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 5629 CATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAA 5688
|||||| || || ||||||||||| |||||||| |||||||||| | ||| || || ||
Sbjct 428 CATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATABAATCATGAAATTGAA 369
Query 5689 AGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATAC 5748
|||||||||||| || ||||||||||||||| |||||||| || |||| ||||| |
Sbjct 368 AGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGAT 309
Query 5749 TAAAAATACTGAGTAGGCTGCGGCAACC 5776
|| || |||| | || || ||||||
Sbjct 308 CAAGAAAACTGCGGTAGCAGCTGCAACC 281
>seq25757
Length=3733
Score = 105 bits (116), Expect = 2e-18
Identities = 120/161 (75%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250
||| ||||| || || |||||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct 3721 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 3662
Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310
||| ||||| | | ||| | ||||||| || | | || | |||||| ||
Sbjct 3661 GTTAGCACGTATATATATATCAGTCCAAGTGTTAATTACACGACTCTGACTGTCAACTAC 3602
Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAG 5351
|| |||||||| || || || || || || ||||||||||
Sbjct 3601 AGATTGATTGAAATTGAAACCATTTAGGTTGAAAGCCATAG 3561
>seq20218
Length=9351
Score = 102 bits (112), Expect = 2e-17
Identities = 77/91 (85%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250
||| ||||| || || |||||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct 2211 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 2152
Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTG 5281
||| |||||||| | || ||| ||||||||
Sbjct 2151 GTTAGCACGGTTGATGATATCAACCCAAGTG 2121
>seq46
Length=65133
Score = 100 bits (110), Expect = 9e-17
Identities = 143/198 (72%), Gaps = 10/198 (5%)
Strand=Plus/Minus
Query 5225 CGTTCGTGCATTACTTCCATACCAAGGTTGGCACGGTTCAGG----ACATCTGCCCAAGT 5280
||||| ||||| ||||||||||||||||| |||||||| | | | ||| ||||||||
Sbjct 52155 CGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATGATACATATCGGCCCAAGT 52096
Query 5281 GGGAA--CGATTCTACCG-CTAGAGTCAACGACTGACTGATTGAAGTTAAAGCCGTTAAG 5337
| || || || | ||| ||||| || || || ||||| || || || || ||
Sbjct 52095 GTTAATTACATGACACTGACTA---TCAACTACAGATTGGTTGAAATTGAAACCATTTAG 52039
Query 5338 ATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAACGACGGGCCAAGT 5397
| ||| |||||| | ||| || | || ||||| ||| || | || ||||||||||
Sbjct 52038 GGTGAAACCCATAGCGCTGATACCTAAAGCGGTAAACCAGATACCTACTACGGGCCAAGC 51979
Query 5398 AGCCAGGAAGAAATGTAA 5415
||| ||||||| |||||
Sbjct 51978 AGCTCGGAAGAAGTGTAA 51961
>seq3149
Length=150756
Score = 80.6 bits (88), Expect = 8e-11
Identities = 74/94 (79%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 5666 TGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAA 5725
|||||||| | ||| | || |||||||||||||| || ||||||||||||||| |||
Sbjct 11692 TGGAATACAATCATGTAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAA 11633
Query 5726 CTTCCCTGTCCGAAAGGGTATACTAAAAATACTG 5759
||||| | |||| ||||| | || |||||||
Sbjct 11632 CTTCCTTAACCGATTGGGTAGATCAAGAATACTG 11599
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 152571671425140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |