Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq11014 181 3e-41 seq20193 170 6e-38 seq31657 129 2e-25 seq25757 105 2e-18 seq20218 102 2e-17 seq46 100 9e-17 seq3149 80.6 8e-11 >seq11014 Length=29319 Score = 181 bits (200), Expect = 3e-41 Identities = 276/393 (70%), Gaps = 4/393 (1%) Strand=Plus/Minus Query 5771 GCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGT 5830 ||||| | ||||||||||| || |||||| |||||||| || | | | | ||||| Sbjct 10442 GCAACAAGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCYASACGGAAGCTAAGC 10383 Query 5831 TCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGG 5890 ||||| | | |||| |||| || | |||| | |||||| | || | |||| Sbjct 10382 TCCCACTCAYGACCCATGTAACAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTTCA 10323 Query 5891 TATGGTCCTCCATTGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGA 5948 || || || || ||| | | ||||||||| | ||| || ||||||||||| || || | Sbjct 10322 TAAGGACCACCGTTGAATAACCATTCATCAACGGAT--GCCGCTTCCCAGATTGGGTAAA 10265 Query 5949 AGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCAT 6008 | ||||| || || || || | || | || ||| || || || ||||||||||| | Sbjct 10264 AATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATGTTGTTTCCGT 10205 Query 6009 AGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTA 6068 | |||||||| |||| || ||||||| || || || ||||| ||||| || ||| | | Sbjct 10204 AAAGTAGAGACCCTGAAACAGGTTCACCAATACCATCAATGTCTACTGGAGGAGCAACAA 10145 Query 6069 CGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAA 6128 ||| || | |||||| ||| ||| || || || | | || ||||| || ||||||| Sbjct 10144 TGAAGGCAATAATAAATACAGAAGTWGCCGTCAATAAGGTAGGGATCATCAAAACACCAA 10085 Query 6129 ACCACCCCACATAGAGGCGGTTGTTGGTGCTAG 6161 ||| || | || || ||||| | ||||||| Sbjct 10084 ACCGTCCAATGTAAAGACGGTTTTCAGTGCTAG 10052 >seq20193 Length=7469 Score = 170 bits (188), Expect = 6e-38 Identities = 268/382 (70%), Gaps = 3/382 (1%) Strand=Plus/Plus Query 5797 AATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGC 5856 |||||| ||| |||| || | | | ||||| ||||| | || |||| |||| || Sbjct 6457 AATCCAAGGTTGCATACCCAGATGGAAGCTAAGCTCCCACTCACGACCCATGTAACAAGC 6516 Query 5857 GATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTC 5916 | |||| | |||||| | || | |||| || || || | ||||| | |||||| Sbjct 6517 TACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCAYCGTTGTATAACCATTC 6576 Query 5917 ATCGA-GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGG 5975 ||| | | || | ||||||||||| || || || ||||| || || || || | | Sbjct 6577 ATCAACGGATGTC-GCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTAG 6635 Query 5976 GTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCAC 6035 | | || ||| || || || ||||||||||| | |||||||| |||| || ||||||| Sbjct 6636 GAATAATGGCACCGGAAATAATGTTGTTTCCGTDAAGTAGAGACCCTGAAACAGGTTCAC 6695 Query 6036 GTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTG 6095 | || || || ||||| ||||| || ||||| | ||| || | |||||| || ||||| Sbjct 6696 GAATACCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACARAAGTTG 6755 Query 6096 CGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGG 6155 | || || | | | ||||| || ||||||||||| || | || || ||||| | | Sbjct 6756 CCGTCAATAAGGTAGAGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT-TCAG 6814 Query 6156 TGCTAGTAACCCAGTCACAGAA 6177 ||||||| | ||||| | |||| Sbjct 6815 TGCTAGTTATCCAGTTATAGAA 6836 >seq31657 Length=14304 Score = 129 bits (142), Expect = 2e-25 Identities = 117/148 (79%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 5629 CATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAA 5688 |||||| || || ||||||||||| |||||||| |||||||||| | ||| || || || Sbjct 428 CATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATABAATCATGAAATTGAA 369 Query 5689 AGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATAC 5748 |||||||||||| || ||||||||||||||| |||||||| || |||| ||||| | Sbjct 368 AGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGAT 309 Query 5749 TAAAAATACTGAGTAGGCTGCGGCAACC 5776 || || |||| | || || |||||| Sbjct 308 CAAGAAAACTGCGGTAGCAGCTGCAACC 281 >seq25757 Length=3733 Score = 105 bits (116), Expect = 2e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 3721 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 3662 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310 ||| ||||| | | ||| | ||||||| || | | || | |||||| || Sbjct 3661 GTTAGCACGTATATATATATCAGTCCAAGTGTTAATTACACGACTCTGACTGTCAACTAC 3602 Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAG 5351 || |||||||| || || || || || || |||||||||| Sbjct 3601 AGATTGATTGAAATTGAAACCATTTAGGTTGAAAGCCATAG 3561 >seq20218 Length=9351 Score = 102 bits (112), Expect = 2e-17 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 2211 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 2152 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTG 5281 ||| |||||||| | || ||| |||||||| Sbjct 2151 GTTAGCACGGTTGATGATATCAACCCAAGTG 2121 >seq46 Length=65133 Score = 100 bits (110), Expect = 9e-17 Identities = 143/198 (72%), Gaps = 10/198 (5%) Strand=Plus/Minus Query 5225 CGTTCGTGCATTACTTCCATACCAAGGTTGGCACGGTTCAGG----ACATCTGCCCAAGT 5280 ||||| ||||| ||||||||||||||||| |||||||| | | | ||| |||||||| Sbjct 52155 CGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTGATGATACATATCGGCCCAAGT 52096 Query 5281 GGGAA--CGATTCTACCG-CTAGAGTCAACGACTGACTGATTGAAGTTAAAGCCGTTAAG 5337 | || || || | ||| ||||| || || || ||||| || || || || || Sbjct 52095 GTTAATTACATGACACTGACTA---TCAACTACAGATTGGTTGAAATTGAAACCATTTAG 52039 Query 5338 ATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAACGACGGGCCAAGT 5397 | ||| |||||| | ||| || | || ||||| ||| || | || |||||||||| Sbjct 52038 GGTGAAACCCATAGCGCTGATACCTAAAGCGGTAAACCAGATACCTACTACGGGCCAAGC 51979 Query 5398 AGCCAGGAAGAAATGTAA 5415 ||| ||||||| ||||| Sbjct 51978 AGCTCGGAAGAAGTGTAA 51961 >seq3149 Length=150756 Score = 80.6 bits (88), Expect = 8e-11 Identities = 74/94 (79%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 5666 TGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAA 5725 |||||||| | ||| | || |||||||||||||| || ||||||||||||||| ||| Sbjct 11692 TGGAATACAATCATGTAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAA 11633 Query 5726 CTTCCCTGTCCGAAAGGGTATACTAAAAATACTG 5759 ||||| | |||| ||||| | || ||||||| Sbjct 11632 CTTCCTTAACCGATTGGGTAGATCAAGAATACTG 11599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152571671425140