Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_016659.1
Length=47536
Score E
Sequences producing significant alignments: (Bits) Value
seq11014 174 5e-39
seq20193 163 9e-36
seq31657 127 6e-25
seq25757 95.1 4e-15
seq20218 84.2 7e-12
seq3149 82.4 2e-11
>seq11014
Length=29319
Score = 174 bits (192), Expect = 5e-39
Identities = 266/382 (70%), Gaps = 0/382 (0%)
Strand=Plus/Minus
Query 26027 CTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAA 26086
|||||||| | |||||||| || ||| ||||| || | ||| || | | | ||||
Sbjct 10444 CTGCAACAAGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCYASACGGAAGCTAA 10385
Query 26087 GTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTT 26146
| ||||| | | |||| |||| | | ||| | | ||||| | ||||| ||||
Sbjct 10384 GCTCCCACTCAYGACCCATGTAACAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTT 10325
Query 26147 GATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGA 26206
||| || |||||||| | ||||| || || | || ||| ||||||||||||||||| |
Sbjct 10324 CATAAGGACCACCGTTGAATAACCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAA 10265
Query 26207 AGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCAT 26266
| || | ||| || || ||| | || | || || || || || ||||||||||| |
Sbjct 10264 AATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATGTTGTTTCCGT 10205
Query 26267 AGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAA 26326
| |||| | ||||| ||||| |||| ||||||||| || || || ||||| ||| |||
Sbjct 10204 AAAGTAGAGACCCTGAAACAGGTTCACCAATACCATCAATGTCTACTGGAGGAGCAACAA 10145
Query 26327 CAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAA 26386
|| ||||| | |||| | | || || || | | ||||||||| | || ||||
Sbjct 10144 TGAAGGCAATAATAAATACAGAAGTWGCCGTCAATAAGGTAGGGATCATCAAAACACCAA 10085
Query 26387 ACCACCCCACATAGAGGCGGTT 26408
||| || | || || |||||
Sbjct 10084 ACCGTCCAATGTAAAGACGGTT 10063
>seq20193
Length=7469
Score = 163 bits (180), Expect = 9e-36
Identities = 311/463 (67%), Gaps = 23/463 (5%)
Strand=Plus/Plus
Query 25988 CTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAG 26047
|||| |||| ||||||| |||||| || || || ||||||||||| |||||||| |
Sbjct 6368 CTTGACCAATTGGGTAGATTAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATG 6427
Query 26048 CTACA--------------CATA--------TCCACGGCCTCATGCCTAGTCTATAACTA 26085
| ||| |||| |||| || ||| || || | |||
Sbjct 6428 CAACAGCAATCCAAAGTTGCATACCCAGCAATCCAAGGTTGCATACCCAGATGGAAGCTA 6487
Query 26086 AGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGT 26145
|| ||||| | || |||| |||| | | ||| | | ||||| | ||||| |||
Sbjct 6488 AGCTCCCACTCACGACCCATGTAACAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGT 6547
Query 26146 TGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAG 26205
| ||| || ||| |||| || ||||| || || | || || |||||||||||||||||
Sbjct 6548 TCATAAGGACCAYCGTTGTATAACCATTCATCAACGGATGTCGCTTCCCAGATTGGGTAA 6607
Query 26206 AAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCA 26265
|| || | ||| || || ||| | || | || || || || || |||||||||||
Sbjct 6608 AAATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATGTTGTTTCCG 6667
Query 26266 TAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCA 26325
| |||| | ||||| ||||| |||||||||||||| || || || ||||| ||||||
Sbjct 6668 TDAAGTAGAGACCCTGAAACAGGTTCACGAATACCATCAATGTCTACTGGAGGAGCAGCA 6727
Query 26326 ACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCA 26385
| || ||||| | |||| | ||| || || | | || |||||| | || |||
Sbjct 6728 ATGAAGGCAATAATAAATACARAAGTTGCCGTCAATAAGGTAGAGATCATCAAAACACCA 6787
Query 26386 AACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGT 26428
||||| || | || || ||||| | || || || | |||||
Sbjct 6788 AACCATCCAATGTAAAGACGGTT-TCAGTGCTAGTTATCCAGT 6829
>seq31657
Length=14304
Score = 127 bits (140), Expect = 6e-25
Identities = 116/147 (79%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 25887 CATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAA 25946
||| || || || ||||||||||| |||||||| ||||| || | || ||| ||||||||
Sbjct 428 CATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATABAATCATGAAATTGAA 369
Query 25947 AGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGAC 26006
||| || || || || ||||||||||||||||| ||||| ||||| || | |||||||
Sbjct 368 AGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGAT 309
Query 26007 TAAGAATACAGCAAATGCTGCTGCAAC 26033
||||| || || || ||||||||
Sbjct 308 CAAGAAAACTGCGGTAGCAGCTGCAAC 282
>seq25757
Length=3733
Score = 95.1 bits (104), Expect = 4e-15
Identities = 119/162 (73%), Gaps = 10/162 (6%)
Strand=Plus/Minus
Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512
|||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | ||
Sbjct 3717 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 3658
Query 25513 GCACGGTTAAGAATGTCAGCCCAAGT-----TGGGACGACTCTTCCGTTGGAATCAACGA 25567
||||| || || |||| |||||| | |||||||| | || ||||| |
Sbjct 3657 GCACGTATATATATATCAGTCCAAGTGTTAATTACACGACTCTGAC--TG---TCAACTA 3603
Query 25568 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAG 25609
| || |||||||| || || || || || || ||||||||||
Sbjct 3602 CAGATTGATTGAAATTGAAACCATTTAGGTTGAAAGCCATAG 3561
>seq20218
Length=9351
Score = 84.2 bits (92), Expect = 7e-12
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512
|||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | ||
Sbjct 2207 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 2148
Query 25513 GCACGGTTAAGAATGTCAGCCCAAGT 25538
|||||||| | || ||| |||||||
Sbjct 2147 GCACGGTTGATGATATCAACCCAAGT 2122
>seq3149
Length=150756
Score = 82.4 bits (90), Expect = 2e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 25924 TGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 25983
|| || |||| ||| |||||||||| || || || || ||||||||||||||||| |||
Sbjct 11692 TGGAATACAATCATGTAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAA 11633
Query 25984 CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGC 26018
|| |||| || | ||||||| |||||||| ||
Sbjct 11632 CTTCCTTAACCGATTGGGTAGATCAAGAATACTGC 11598
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151916006317240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |