Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq11014 174 5e-39 seq20193 163 9e-36 seq31657 127 6e-25 seq25757 95.1 4e-15 seq20218 84.2 7e-12 seq3149 82.4 2e-11 >seq11014 Length=29319 Score = 174 bits (192), Expect = 5e-39 Identities = 266/382 (70%), Gaps = 0/382 (0%) Strand=Plus/Minus Query 26027 CTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAA 26086 |||||||| | |||||||| || ||| ||||| || | ||| || | | | |||| Sbjct 10444 CTGCAACAAGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCYASACGGAAGCTAA 10385 Query 26087 GTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTT 26146 | ||||| | | |||| |||| | | ||| | | ||||| | ||||| |||| Sbjct 10384 GCTCCCACTCAYGACCCATGTAACAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTT 10325 Query 26147 GATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGA 26206 ||| || |||||||| | ||||| || || | || ||| ||||||||||||||||| | Sbjct 10324 CATAAGGACCACCGTTGAATAACCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAA 10265 Query 26207 AGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCAT 26266 | || | ||| || || ||| | || | || || || || || ||||||||||| | Sbjct 10264 AATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATGTTGTTTCCGT 10205 Query 26267 AGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAA 26326 | |||| | ||||| ||||| |||| ||||||||| || || || ||||| ||| ||| Sbjct 10204 AAAGTAGAGACCCTGAAACAGGTTCACCAATACCATCAATGTCTACTGGAGGAGCAACAA 10145 Query 26327 CAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAA 26386 || ||||| | |||| | | || || || | | ||||||||| | || |||| Sbjct 10144 TGAAGGCAATAATAAATACAGAAGTWGCCGTCAATAAGGTAGGGATCATCAAAACACCAA 10085 Query 26387 ACCACCCCACATAGAGGCGGTT 26408 ||| || | || || ||||| Sbjct 10084 ACCGTCCAATGTAAAGACGGTT 10063 >seq20193 Length=7469 Score = 163 bits (180), Expect = 9e-36 Identities = 311/463 (67%), Gaps = 23/463 (5%) Strand=Plus/Plus Query 25988 CTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAG 26047 |||| |||| ||||||| |||||| || || || ||||||||||| |||||||| | Sbjct 6368 CTTGACCAATTGGGTAGATTAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATG 6427 Query 26048 CTACA--------------CATA--------TCCACGGCCTCATGCCTAGTCTATAACTA 26085 | ||| |||| |||| || ||| || || | ||| Sbjct 6428 CAACAGCAATCCAAAGTTGCATACCCAGCAATCCAAGGTTGCATACCCAGATGGAAGCTA 6487 Query 26086 AGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGT 26145 || ||||| | || |||| |||| | | ||| | | ||||| | ||||| ||| Sbjct 6488 AGCTCCCACTCACGACCCATGTAACAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGT 6547 Query 26146 TGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAG 26205 | ||| || ||| |||| || ||||| || || | || || ||||||||||||||||| Sbjct 6548 TCATAAGGACCAYCGTTGTATAACCATTCATCAACGGATGTCGCTTCCCAGATTGGGTAA 6607 Query 26206 AAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCA 26265 || || | ||| || || ||| | || | || || || || || ||||||||||| Sbjct 6608 AAATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATGTTGTTTCCG 6667 Query 26266 TAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCA 26325 | |||| | ||||| ||||| |||||||||||||| || || || ||||| |||||| Sbjct 6668 TDAAGTAGAGACCCTGAAACAGGTTCACGAATACCATCAATGTCTACTGGAGGAGCAGCA 6727 Query 26326 ACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCA 26385 | || ||||| | |||| | ||| || || | | || |||||| | || ||| Sbjct 6728 ATGAAGGCAATAATAAATACARAAGTTGCCGTCAATAAGGTAGAGATCATCAAAACACCA 6787 Query 26386 AACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGT 26428 ||||| || | || || ||||| | || || || | ||||| Sbjct 6788 AACCATCCAATGTAAAGACGGTT-TCAGTGCTAGTTATCCAGT 6829 >seq31657 Length=14304 Score = 127 bits (140), Expect = 6e-25 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 25887 CATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAA 25946 ||| || || || ||||||||||| |||||||| ||||| || | || ||| |||||||| Sbjct 428 CATGTGAAATGGGTGCATAAGGATGTTGTGTTCAGCCTGGAATABAATCATGAAATTGAA 369 Query 25947 AGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGAC 26006 ||| || || || || ||||||||||||||||| ||||| ||||| || | ||||||| Sbjct 368 AGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGAT 309 Query 26007 TAAGAATACAGCAAATGCTGCTGCAAC 26033 ||||| || || || |||||||| Sbjct 308 CAAGAAAACTGCGGTAGCAGCTGCAAC 282 >seq25757 Length=3733 Score = 95.1 bits (104), Expect = 4e-15 Identities = 119/162 (73%), Gaps = 10/162 (6%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | || Sbjct 3717 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 3658 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGT-----TGGGACGACTCTTCCGTTGGAATCAACGA 25567 ||||| || || |||| |||||| | |||||||| | || ||||| | Sbjct 3657 GCACGTATATATATATCAGTCCAAGTGTTAATTACACGACTCTGAC--TG---TCAACTA 3603 Query 25568 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAG 25609 | || |||||||| || || || || || || |||||||||| Sbjct 3602 CAGATTGATTGAAATTGAAACCATTTAGGTTGAAAGCCATAG 3561 >seq20218 Length=9351 Score = 84.2 bits (92), Expect = 7e-12 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | || Sbjct 2207 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 2148 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGT 25538 |||||||| | || ||| ||||||| Sbjct 2147 GCACGGTTGATGATATCAACCCAAGT 2122 >seq3149 Length=150756 Score = 82.4 bits (90), Expect = 2e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 25924 TGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 25983 || || |||| ||| |||||||||| || || || || ||||||||||||||||| ||| Sbjct 11692 TGGAATACAATCATGTAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAA 11633 Query 25984 CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGC 26018 || |||| || | ||||||| |||||||| || Sbjct 11632 CTTCCTTAACCGATTGGGTAGATCAAGAATACTGC 11598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151916006317240