Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq728 140 4e-28
>seq728
Length=46982
Score = 140 bits (154), Expect = 4e-28
Identities = 393/597 (66%), Gaps = 11/597 (2%)
Strand=Plus/Plus
Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232
||||| ||||||||||| || |||||||| ||||| || || ||||| || ||||||
Sbjct 2246 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 2305
Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGAAAA 37291
||||| |||||||| || | |||||| | ||||||||| | || ||| ||| ||
Sbjct 2306 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCG-AACAGAAGCTTCCGCTGAA 2364
Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTT--GAACTATAA 37349
|||||| |||||||| ||||| || || | ||| |||| ||| | ||
Sbjct 2365 GAAAATCCCTTCAACACAGGCAAAAGCCACCAAACGCTCCGCGAAGGTTTCGGAC----- 2419
Query 37350 TCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATT 37409
|| ||||| | ||| | ||||| || |||||| ||||| |||||
Sbjct 2420 CCATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATC 2479
Query 37410 GCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTA 37469
|| || | | | ||||| ||| ||| | || || | || | || |||||
Sbjct 2480 GCACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTG 2539
Query 37470 TACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCA 37529
||||| || || || ||||| ||||| || || || || ||||| ||| | | | ||
Sbjct 2540 TACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAACCTCG 2599
Query 37530 GATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTA 37589
| | || || || || | ||||| ||| | ||| || ||| || || ||
Sbjct 2600 GCAACCTGGACGTCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAG 2659
Query 37590 GCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTC 37649
|| ||||| || |||||||||| | || ||||| |||||| | || || |||| |
Sbjct 2660 GCAGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCC 2719
Query 37650 CAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCA 37709
|| | | | |||| | || | ||| ||||| || || ||||| ||| ||||| ||
Sbjct 2720 CAGTGACGAGTATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCT 2779
Query 37710 CGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACA-AATCTATC 37765
|| ||||| |||||| | || || ||||| || | |||| |||| |||
Sbjct 2780 TTCTTGTACATTTCCCAAATCTGTGGATACTGAATTGGGAACA-TACAGAATCGATC 2835
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 591998503759600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |