Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq545 111 1e-19
seq558 100 2e-16
seq796 98.7 8e-16
seq3886 96.9 3e-15
>seq545
Length=31085
Score = 111 bits (122), Expect = 1e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611
|||||||||| ||| || || ||| || || || ||||| || | ||| | | |
Sbjct 3311 CGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCCR 3252
Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671
|| || | || ||||| ||||| |||| |||||||| || | ||||| |||||||||
Sbjct 3251 TCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTG 3192
Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731
|| ||||||| ||| ||| | | | ||||| ||| ||||||| |||||
Sbjct 3191 TCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGTAATT 3132
Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || |||||||| || |||||||| |||||
Sbjct 3131 GTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 3097
Score = 107 bits (118), Expect = 1e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611
|||||||||| ||| || || ||| || || || ||||| || | ||| | | |
Sbjct 3539 CGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCCR 3480
Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671
|| || | || ||||| ||||| |||| |||||||| || | ||||| |||||||||
Sbjct 3479 TCCTCAAGWTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTG 3420
Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731
|| ||||||| ||| ||| | | | ||||| ||| ||||||| || ||
Sbjct 3419 TCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGTGATT 3360
Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|| || || |||||||| || ||||| |||||||||
Sbjct 3359 GTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCATC 3324
Score = 98.7 bits (108), Expect = 8e-16
Identities = 163/233 (70%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 48536 GTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATC 48595
||| ||||| | |||| || || | ||| || || |||||| || || || || ||
Sbjct 3783 GTCACCGCCACGGAGCCTCAGGACAAGATGAAGAGTAGACTCTTTCTGGATGTTATAGTC 3724
Query 48596 AGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG- 48654
| || | ||| | || || | ||||||||| ||||| || || | ||||||||| |
Sbjct 3723 TGCAAGGGTGCGACCATCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGTTGATCTGG 3664
Query 48655 TGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCT 48714
||||| | || |||||||| |||||| ||| ||| | | || || || ||
Sbjct 3663 TGGGATC-CCTTCCTTGTCCTGTATCTTTGCTTTCACATTGTCAATAGTATCAGAGCTCT 3605
Query 48715 CCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
||||||||| || || || || || |||| ||| || ||||| |||||||||
Sbjct 3604 CCACCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCATC 3552
>seq558
Length=67963
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| || ||| ||| || || || ||||| |||| ||| |||| | || || | ||||
Sbjct 17116 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGC 17175
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
|||||||| || |||| |||||| || || | |||| ||| |||||||| ||||||
Sbjct 17176 TTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTA 17235
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
|| ||| | | | ||||| | ||| ||||| | ||||| || || ||||||
Sbjct 17236 GCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTC 17295
Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766
| || || ||||| ||||||||
Sbjct 17296 AGGGTCTTCACAAAGATCTGCAT 17318
>seq796
Length=44438
Score = 98.7 bits (108), Expect = 8e-16
Identities = 153/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | |||||| || || ||| |||||||||||| |||||||| | || | ||
Sbjct 18822 AGACGGAGCACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCGGCGAGGGTACGG 18763
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | |||||| || ||||| ||||| | ||| || || | ||||| ||| |||
Sbjct 18762 CCATCTTCAAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCC 18703
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| ||| || | | | ||||| |||||||| | ||
Sbjct 18702 TTGTCCTGGATCTTGGCTTTAACGTTGTCAATGGTGTCTGAGCTTTCCACCTCAAGGGTG 18643
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|| || ||||| || | ||||| ||||| |||||||||
Sbjct 18642 ATGGTCTTTCCAGTGAGGGTTTTGACAAATATCTGCATC 18604
Score = 89.7 bits (98), Expect = 4e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| ||||| || ||||| || | ||| | | | || || | |||||| || |||||
Sbjct 20164 CTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGCTGCTTCCCTGCAAA 20105
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
||||||| ||| || |||| || | ||||||||||| |||||| || |||
Sbjct 20104 GATCAGTCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGAATCTTAGCCTTCACATT 20045
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | || || ||||||||||| || || ||||| || ||||| || || ||
Sbjct 20044 GTCAATGGTATCAGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTCAAGGTCTTCAC 19985
Query 48755 AAAAATCTGCAT 48766
||||||||||||
Sbjct 19984 AAAAATCTGCAT 19973
>seq3886
Length=20373
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || | ||| || | ||||||||| || ||| ||| || || || || ||||||| |
Sbjct 13911 CCACCACGTAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCT 13970
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
||| | || |||| ||||||||||| ||||| || || || | || ||||| | ||||
Sbjct 13971 AGAGTCCGTCCGTCCTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCAGGGGGA 14030
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| || |||||||| ||||| || || | | | || || ||||||
Sbjct 14031 ATCCCTTCCTTGTCCTGGATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACC 14090
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|| | || || || ||||| || | |||||| || || |||||||||
Sbjct 14091 TCTAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCATC 14138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380738011315770
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |